RNA–Protein interactions for RNA: ENST00000300933.8

TPM4-201, Transcript of tropomyosin 4, humanhuman

TSL 1 (best) BASIC

Gene TPM4, Length 2,666 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-201ENST00000300933 A8MUU9 505 aa11.8□□□□□ -0.52
TPM4-201ENST00000300933 C20orf166-AS1Q96NR2 134 aa11.8□□□□□ -0.52
TPM4-201ENST00000300933 H3BS24 57 aa11.71□□□□□ -0.54
TPM4-201ENST00000300933 H0YAA0 97 aa11.69□□□□□ -0.54
TPM4-201ENST00000300933 MT1HL1P0DM35 61 aa11.6□□□□□ -0.55
TPM4-201ENST00000300933 KRTAP3-1Q9BYR8 98 aa11.59□□□□□ -0.55
TPM4-201ENST00000300933 A0A1B0GU33 70 aa11.54□□□□□ -0.56
TPM4-201ENST00000300933 KRTAP4-5Q9BYR2 181 aa11.53□□□□□ -0.56
TPM4-201ENST00000300933 ABCA13Q86UQ4 5058 aa11.52□□□□□ -0.57
TPM4-201ENST00000300933 KRTAP25-1Q3LHN0 102 aa11.51□□□□□ -0.57
TPM4-201ENST00000300933 XP32Q5T750 250 aa11.49□□□□□ -0.57
TPM4-201ENST00000300933 CRIPTQ9P021 101 aa11.49□□□□□ -0.57
TPM4-201ENST00000300933 LPAP08519 4548 aa11.46□□□□□ -0.57
TPM4-201ENST00000300933 H1FX-AS1Q4G0G2 97 aa11.45□□□□□ -0.58
TPM4-201ENST00000300933 LRP2P98164 4655 aa11.43□□□□□ -0.58
TPM4-201ENST00000300933 RPL37P61927 97 aaKnown RBP11.42□□□□□ -0.58
TPM4-201ENST00000300933 ROMO1P60602 79 aa11.35□□□□□ -0.59
TPM4-201ENST00000300933 COX6B2Q6YFQ2 88 aa11.34□□□□□ -0.59
TPM4-201ENST00000300933 K7ERS5 55 aa11.26□□□□□ -0.61
TPM4-201ENST00000300933 HERC2O95714 4834 aa11.18□□□□□ -0.62
TPM4-201ENST00000300933 TPRXLQ17RH7 258 aa11.1□□□□□ -0.63
TPM4-201ENST00000300933 A0A0D9SG42 100 aa11.1□□□□□ -0.63
TPM4-201ENST00000300933 KRTAP3-3Q9BYR6 98 aa11.1□□□□□ -0.63
TPM4-201ENST00000300933 P0C880 135 aa11.08□□□□□ -0.64
TPM4-201ENST00000300933 KRTAP13-4Q3LI77 160 aa11.02□□□□□ -0.65
TPM4-201ENST00000300933 J3QL48 77 aa11.02□□□□□ -0.65
TPM4-201ENST00000300933 S4R3F8 94 aa11□□□□□ -0.65
TPM4-201ENST00000300933 KRTAP10-6P60371 365 aaPredicted RBP10.99□□□□□ -0.65
TPM4-201ENST00000300933 SPINT4Q6UDR6 99 aa10.94□□□□□ -0.66
TPM4-201ENST00000300933 BIRC6Q9NR09 4857 aa10.92□□□□□ -0.66
TPM4-201ENST00000300933 C10orf95Q9H7T3 257 aa10.92□□□□□ -0.66
TPM4-201ENST00000300933 KRTAP3-2Q9BYR7 98 aa10.86□□□□□ -0.67
TPM4-201ENST00000300933 MUC2Q02817 5179 aa10.86□□□□□ -0.67
TPM4-201ENST00000300933 PCLOQ9Y6V0 5065 aa10.81□□□□□ -0.68
TPM4-201ENST00000300933 HERC1Q15751 4861 aa10.79□□□□□ -0.68
TPM4-201ENST00000300933 KRTAP4-1Q9BYQ7 146 aa10.78□□□□□ -0.68
TPM4-201ENST00000300933 MUC17Q685J3 4493 aa10.76□□□□□ -0.69
TPM4-201ENST00000300933 SEC61BP60468 96 aaKnown RBP10.71□□□□□ -0.69
TPM4-201ENST00000300933 KRTAP12-2P59991 146 aa10.71□□□□□ -0.7
TPM4-201ENST00000300933 NDUFAF8A1L188 74 aa10.64□□□□□ -0.71
TPM4-201ENST00000300933 KRTAP15-1Q3LI76 137 aa10.6□□□□□ -0.71
TPM4-201ENST00000300933 KRTAP12-1P59990 96 aa10.53□□□□□ -0.72
TPM4-201ENST00000300933 HMCN2Q8NDA2 5059 aa10.46□□□□□ -0.73
TPM4-201ENST00000300933 KRTAP19-2Q3LHN2 52 aa10.41□□□□□ -0.74
TPM4-201ENST00000300933 LORP23490 312 aaPredicted RBP10.33□□□□□ -0.76
TPM4-201ENST00000300933 FAT4Q6V0I7 4981 aa10.31□□□□□ -0.76
TPM4-201ENST00000300933 RNF213Q63HN8 5207 aa10.3□□□□□ -0.76
TPM4-201ENST00000300933 M0QZ58 72 aa10.29□□□□□ -0.76
TPM4-201ENST00000300933 R4GN34 69 aa10.24□□□□□ -0.77
TPM4-201ENST00000300933 UBR4Q5T4S7 5183 aa10.23□□□□□ -0.77
TPM4-201ENST00000300933 FLGP20930 4061 aaPredicted RBP10.23□□□□□ -0.77
TPM4-201ENST00000300933 LCE2CQ5TA81 110 aa9.98□□□□□ -0.81
TPM4-201ENST00000300933 PLAC4Q8WY50 150 aa9.97□□□□□ -0.81
TPM4-201ENST00000300933 M0R2T5 61 aa9.83□□□□□ -0.84
TPM4-201ENST00000300933 MT1HP80294 61 aa9.73□□□□□ -0.85
TPM4-201ENST00000300933 CAMK2N1Q7Z7J9 78 aa9.69□□□□□ -0.86
TPM4-201ENST00000300933 LUZP6Q538Z0 58 aa9.64□□□□□ -0.87
TPM4-201ENST00000300933 PP632Q6XCG6 107 aa9.53□□□□□ -0.88
TPM4-201ENST00000300933 A0A0A0MQY5 61 aa9.52□□□□□ -0.88
TPM4-201ENST00000300933 KRTAP10-10P60014 251 aa9.51□□□□□ -0.89
TPM4-201ENST00000300933 MT1FP04733 61 aa9.51□□□□□ -0.89
TPM4-201ENST00000300933 KRTAP19-1Q8IUB9 90 aa9.51□□□□□ -0.89
TPM4-201ENST00000300933 MT2AP02795 61 aa9.49□□□□□ -0.89
TPM4-201ENST00000300933 KRTAP9-8Q9BYQ0 159 aa9.46□□□□□ -0.9
TPM4-201ENST00000300933 SPRR2GQ9BYE4 73 aa9.43□□□□□ -0.9
TPM4-201ENST00000300933 TNP1P09430 55 aa9.25□□□□□ -0.93
TPM4-201ENST00000300933 SPRR5A0A1B0GTR4 108 aa9.06□□□□□ -0.96
TPM4-201ENST00000300933 MT1BP07438 61 aa9.06□□□□□ -0.96
TPM4-201ENST00000300933 KRTAP9-3Q9BYQ3 159 aa9.06□□□□□ -0.96
TPM4-201ENST00000300933 KRTAP19-8Q3LI54 63 aa9.05□□□□□ -0.96
TPM4-201ENST00000300933 USH2AO75445 5202 aa9.04□□□□□ -0.96
TPM4-201ENST00000300933 KRTAP23-1A1A580 65 aa8.99□□□□□ -0.97
TPM4-201ENST00000300933 KRTAP10-5P60370 271 aa8.91□□□□□ -0.98
TPM4-201ENST00000300933 MT1XP80297 61 aa8.91□□□□□ -0.98
TPM4-201ENST00000300933 LCE3AQ5TA76 89 aa8.86□□□□□ -0.99
TPM4-201ENST00000300933 LCE2AQ5TA79 106 aaPredicted RBP8.86□□□□□ -0.99
TPM4-201ENST00000300933 LCE2BO14633 110 aa8.83□□□□□ -1
TPM4-201ENST00000300933 KRTAP10-7P60409 375 aaPredicted RBP8.7□□□□□ -1.02
TPM4-201ENST00000300933 KMT2DO14686 5537 aa8.67□□□□□ -1.02
TPM4-201ENST00000300933 FSIP2Q5CZC0 6907 aa8.59□□□□□ -1.03
TPM4-201ENST00000300933 KRTAP10-12P60413 245 aa8.59□□□□□ -1.03
TPM4-201ENST00000300933 PRO2289Q9P1D8 64 aa8.54□□□□□ -1.04
TPM4-201ENST00000300933 KRTAP8-1Q8IUC2 63 aa8.49□□□□□ -1.05
TPM4-201ENST00000300933 KRTAP12-3P60328 96 aa8.4□□□□□ -1.06
TPM4-201ENST00000300933 KRTAP4-8A0A0G2JLE6 195 aa8.35□□□□□ -1.07
TPM4-201ENST00000300933 KRTAP4-8Q9BYQ9 185 aa8.35□□□□□ -1.07
TPM4-201ENST00000300933 SSPOA2VEC9 5147 aa8.33□□□□□ -1.08
TPM4-201ENST00000300933 INE1O15225 51 aa8.32□□□□□ -1.08
TPM4-201ENST00000300933 KRTAP19-5Q3LI72 72 aa8.25□□□□□ -1.09
TPM4-201ENST00000300933 KRTAP19-7Q3SYF9 63 aa7.95□□□□□ -1.14
TPM4-201ENST00000300933 KRTAP19-6Q3LI70 58 aa7.9□□□□□ -1.14
TPM4-201ENST00000300933 LCE3CQ5T5A8 94 aa7.86□□□□□ -1.15
TPM4-201ENST00000300933 FCGBPQ9Y6R7 5405 aaPredicted RBP7.85□□□□□ -1.15
TPM4-201ENST00000300933 KRTAP4-7Q9BYR0 210 aa7.85□□□□□ -1.15
TPM4-201ENST00000300933 MUC12Q9UKN1 5478 aa7.75□□□□□ -1.17
TPM4-201ENST00000300933 MT1EP04732 61 aa7.72□□□□□ -1.17
TPM4-201ENST00000300933 KRTAP9-6A8MVA2 160 aa7.66□□□□□ -1.18
TPM4-201ENST00000300933 MT1LQ93083 61 aa7.66□□□□□ -1.18
TPM4-201ENST00000300933 LCE2DQ5TA82 110 aaPredicted RBP7.64□□□□□ -1.19
TPM4-201ENST00000300933 MACF1Q9UPN3 7388 aaKnown RBP7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms