RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 KRTAP3-2Q9BYR7 98 aa5.25□□□□□ -1.57
PCF11-201ENST00000298281 ALMS1Q8TCU4 4167 aa5.23□□□□□ -1.57
PCF11-201ENST00000298281 KRTAP3-3Q9BYR6 98 aa5.22□□□□□ -1.57
PCF11-201ENST00000298281 LCE3AQ5TA76 89 aa5.22□□□□□ -1.57
PCF11-201ENST00000298281 KRTAP10-7P60409 375 aaPredicted RBP5.21□□□□□ -1.58
PCF11-201ENST00000298281 CMYA5Q8N3K9 4069 aa5.19□□□□□ -1.58
PCF11-201ENST00000298281 KRTAP10-4P60372 401 aaPredicted RBP5.06□□□□□ -1.6
PCF11-201ENST00000298281 KRTAP4-5Q9BYR2 181 aa5.01□□□□□ -1.61
PCF11-201ENST00000298281 KMT2AQ03164 3969 aa4.98□□□□□ -1.61
PCF11-201ENST00000298281 DNAH1Q9P2D7 4330 aa4.97□□□□□ -1.61
PCF11-201ENST00000298281 DNAH9Q9NYC9 4486 aa4.94□□□□□ -1.62
PCF11-201ENST00000298281 DNAH3Q8TD57 4116 aa4.93□□□□□ -1.62
PCF11-201ENST00000298281 ANK2Q01484 3957 aa4.93□□□□□ -1.62
PCF11-201ENST00000298281 SPRR2FQ96RM1 72 aa4.91□□□□□ -1.62
PCF11-201ENST00000298281 PRKDCP78527 4128 aaKnown RBP4.86□□□□□ -1.63
PCF11-201ENST00000298281 DNAH7Q8WXX0 4024 aa4.84□□□□□ -1.63
PCF11-201ENST00000298281 FRAS1Q86XX4 4008 aa4.83□□□□□ -1.64
PCF11-201ENST00000298281 LYSTQ99698 3801 aa4.82□□□□□ -1.64
PCF11-201ENST00000298281 DNAH6Q9C0G6 4158 aa4.75□□□□□ -1.65
PCF11-201ENST00000298281 KRTAP19-4Q3LI73 84 aa4.73□□□□□ -1.65
PCF11-201ENST00000298281 VPS13BQ7Z7G8 4022 aa4.72□□□□□ -1.65
PCF11-201ENST00000298281 SPRR2EP22531 72 aa4.7□□□□□ -1.66
PCF11-201ENST00000298281 SPRR2BP35325 72 aa4.7□□□□□ -1.66
PCF11-201ENST00000298281 SPRR2AP35326 72 aa4.7□□□□□ -1.66
PCF11-201ENST00000298281 FAT2Q9NYQ8 4349 aa4.7□□□□□ -1.66
PCF11-201ENST00000298281 SPRR2GQ9BYE4 73 aa4.69□□□□□ -1.66
PCF11-201ENST00000298281 MT1HP80294 61 aa4.64□□□□□ -1.67
PCF11-201ENST00000298281 LCE3BQ5TA77 95 aa4.63□□□□□ -1.67
PCF11-201ENST00000298281 HECTD4Q9Y4D8 3996 aa4.61□□□□□ -1.67
PCF11-201ENST00000298281 KRTAP19-5Q3LI72 72 aa4.6□□□□□ -1.67
PCF11-201ENST00000298281 MT2AP02795 61 aa4.6□□□□□ -1.67
PCF11-201ENST00000298281 DNAH10Q8IVF4 4471 aa4.6□□□□□ -1.67
PCF11-201ENST00000298281 DNAH2Q9P225 4427 aa4.58□□□□□ -1.68
PCF11-201ENST00000298281 LCE3CQ5T5A8 94 aa4.56□□□□□ -1.68
PCF11-201ENST00000298281 DYNC2H1Q8NCM8 4307 aaKnown RBP4.55□□□□□ -1.68
PCF11-201ENST00000298281 KRTAP4-1Q9BYQ7 146 aa4.54□□□□□ -1.68
PCF11-201ENST00000298281 SPRR2DP22532 72 aa4.54□□□□□ -1.68
PCF11-201ENST00000298281 KRTAP12-4P60329 112 aa4.52□□□□□ -1.69
PCF11-201ENST00000298281 STARD9Q9P2P6 4700 aa4.52□□□□□ -1.69
PCF11-201ENST00000298281 VPS13DQ5THJ4 4388 aa4.5□□□□□ -1.69
PCF11-201ENST00000298281 LCE2BO14633 110 aa4.48□□□□□ -1.69
PCF11-201ENST00000298281 PLECQ15149 4684 aaKnown RBP4.48□□□□□ -1.69
PCF11-201ENST00000298281 MT1FP04733 61 aa4.45□□□□□ -1.7
PCF11-201ENST00000298281 DNAH11Q96DT5 4516 aa4.41□□□□□ -1.7
PCF11-201ENST00000298281 DNAH17Q9UFH2 4485 aa4.4□□□□□ -1.7
PCF11-201ENST00000298281 DNAH5Q8TE73 4624 aa4.4□□□□□ -1.71
PCF11-201ENST00000298281 FAT1Q14517 4588 aa4.34□□□□□ -1.72
PCF11-201ENST00000298281 PKHD1P08F94 4074 aa4.33□□□□□ -1.72
PCF11-201ENST00000298281 LRP1BQ9NZR2 4599 aa4.32□□□□□ -1.72
PCF11-201ENST00000298281 SPRR5A0A1B0GTR4 108 aa4.32□□□□□ -1.72
PCF11-201ENST00000298281 LCE2CQ5TA81 110 aa4.31□□□□□ -1.72
PCF11-201ENST00000298281 KRTAP19-8Q3LI54 63 aa4.31□□□□□ -1.72
PCF11-201ENST00000298281 MT1GP13640 62 aa4.3□□□□□ -1.72
PCF11-201ENST00000298281 KRTAP17-1Q9BYP8 105 aa4.26□□□□□ -1.73
PCF11-201ENST00000298281 FLGP20930 4061 aaPredicted RBP4.25□□□□□ -1.73
PCF11-201ENST00000298281 LCE3EQ5T5B0 92 aa4.24□□□□□ -1.73
PCF11-201ENST00000298281 LCE3DQ9BYE3 92 aa4.23□□□□□ -1.73
PCF11-201ENST00000298281 HSPG2P98160 4391 aa4.23□□□□□ -1.73
PCF11-201ENST00000298281 LCE2DQ5TA82 110 aaPredicted RBP4.22□□□□□ -1.73
PCF11-201ENST00000298281 DNAH8Q96JB1 4490 aa4.21□□□□□ -1.74
PCF11-201ENST00000298281 PKHD1L1Q86WI1 4243 aa4.21□□□□□ -1.74
PCF11-201ENST00000298281 KRTAP19-1Q8IUB9 90 aa4.19□□□□□ -1.74
PCF11-201ENST00000298281 LRP1Q07954 4544 aaKnown RBP4.16□□□□□ -1.74
PCF11-201ENST00000298281 MT4P47944 62 aa4.14□□□□□ -1.75
PCF11-201ENST00000298281 MT1XP80297 61 aa4.12□□□□□ -1.75
PCF11-201ENST00000298281 SACSQ9NZJ4 4579 aa4.11□□□□□ -1.75
PCF11-201ENST00000298281 DNHD1Q96M86 4753 aa4.1□□□□□ -1.75
PCF11-201ENST00000298281 LCE1BQ5T7P3 118 aa4.08□□□□□ -1.76
PCF11-201ENST00000298281 TNXBP22105 4242 aa4.07□□□□□ -1.76
PCF11-201ENST00000298281 PKD1P98161 4303 aa4.06□□□□□ -1.76
PCF11-201ENST00000298281 MT1BP07438 61 aa4.03□□□□□ -1.76
PCF11-201ENST00000298281 DYNC1H1Q14204 4646 aaKnown RBP4.02□□□□□ -1.77
PCF11-201ENST00000298281 LCE1DQ5T752 114 aa4□□□□□ -1.77
PCF11-201ENST00000298281 FAT3Q8TDW7 4589 aa3.99□□□□□ -1.77
PCF11-201ENST00000298281 KRTAP9-8Q9BYQ0 159 aa3.99□□□□□ -1.77
PCF11-201ENST00000298281 LPAP08519 4548 aa3.97□□□□□ -1.77
PCF11-201ENST00000298281 RYR1P21817 5038 aa3.97□□□□□ -1.77
PCF11-201ENST00000298281 APOBP04114 4563 aaKnown RBP3.97□□□□□ -1.77
PCF11-201ENST00000298281 KRTAP9-3Q9BYQ3 159 aa3.92□□□□□ -1.78
PCF11-201ENST00000298281 PRM1P04553 51 aa3.91□□□□□ -1.78
PCF11-201ENST00000298281 KRTAP19-3Q7Z4W3 81 aa3.91□□□□□ -1.78
PCF11-201ENST00000298281 MT1LQ93083 61 aa3.91□□□□□ -1.78
PCF11-201ENST00000298281 KRTAP4-8A0A0G2JLE6 195 aa3.9□□□□□ -1.79
PCF11-201ENST00000298281 KRTAP4-8Q9BYQ9 185 aa3.9□□□□□ -1.79
PCF11-201ENST00000298281 LCE5AQ5TCM9 118 aa3.88□□□□□ -1.79
PCF11-201ENST00000298281 KRTAP9-2Q9BYQ4 174 aa3.86□□□□□ -1.79
PCF11-201ENST00000298281 MT3P25713 68 aa3.84□□□□□ -1.8
PCF11-201ENST00000298281 LCE1CQ5T751 118 aa3.77□□□□□ -1.81
PCF11-201ENST00000298281 LCE1EQ5T753 118 aa3.77□□□□□ -1.81
PCF11-201ENST00000298281 LCE1FQ5T754 118 aa3.77□□□□□ -1.81
PCF11-201ENST00000298281 LCE1AQ5T7P2 110 aa3.77□□□□□ -1.81
PCF11-201ENST00000298281 MYCBP2O75592 4640 aa3.77□□□□□ -1.81
PCF11-201ENST00000298281 MT1EP04732 61 aa3.77□□□□□ -1.81
PCF11-201ENST00000298281 HYDINQ4G0P3 5121 aa3.75□□□□□ -1.81
PCF11-201ENST00000298281 RYR3Q15413 4870 aa3.74□□□□□ -1.81
PCF11-201ENST00000298281 KRTAP9-6A0A140TA67 174 aa3.71□□□□□ -1.82
PCF11-201ENST00000298281 MT1MQ8N339 61 aa3.67□□□□□ -1.82
PCF11-201ENST00000298281 KRTAP4-7Q9BYR0 210 aa3.65□□□□□ -1.82
PCF11-201ENST00000298281 KRTAP19-6Q3LI70 58 aa3.62□□□□□ -1.83
PCF11-201ENST00000298281 MUC17Q685J3 4493 aa3.61□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms