RNA–Protein interactions for RNA: ENST00000273062.6

CTDSP1-201, Transcript of CTD small phosphatase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTDSP1, Length 2,638 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDSP1-201ENST00000273062 FAT1Q14517 4588 aa8.45□□□□□ -1.06
CTDSP1-201ENST00000273062 APOBP04114 4563 aaKnown RBP8.41□□□□□ -1.06
CTDSP1-201ENST00000273062 A0A1B0GVY2 172 aa8.4□□□□□ -1.06
CTDSP1-201ENST00000273062 A0A0D9SG42 100 aa8.36□□□□□ -1.07
CTDSP1-201ENST00000273062 KRTAP13-4Q3LI77 160 aa8.34□□□□□ -1.07
CTDSP1-201ENST00000273062 RPL37P61927 97 aaKnown RBP8.32□□□□□ -1.08
CTDSP1-201ENST00000273062 KRTAP10-4P60372 401 aaPredicted RBP8.3□□□□□ -1.08
CTDSP1-201ENST00000273062 RYR3Q15413 4870 aa8.25□□□□□ -1.09
CTDSP1-201ENST00000273062 PKHD1L1Q86WI1 4243 aa8.22□□□□□ -1.09
CTDSP1-201ENST00000273062 KRTAP10-6P60371 365 aaPredicted RBP8.2□□□□□ -1.1
CTDSP1-201ENST00000273062 LUZP6Q538Z0 58 aa8.17□□□□□ -1.1
CTDSP1-201ENST00000273062 LRP1Q07954 4544 aaKnown RBP8.16□□□□□ -1.1
CTDSP1-201ENST00000273062 C9orf92A6NGG3 77 aa8.14□□□□□ -1.11
CTDSP1-201ENST00000273062 HSPG2P98160 4391 aa8.12□□□□□ -1.11
CTDSP1-201ENST00000273062 RPS29P62273 56 aaKnown RBP8.11□□□□□ -1.11
CTDSP1-201ENST00000273062 KRTAP12-2P59991 146 aa8.1□□□□□ -1.11
CTDSP1-201ENST00000273062 S4R3F8 94 aa8.09□□□□□ -1.11
CTDSP1-201ENST00000273062 KRTAP3-2Q9BYR7 98 aa8.08□□□□□ -1.12
CTDSP1-201ENST00000273062 KRTAP17-1Q9BYP8 105 aa8.07□□□□□ -1.12
CTDSP1-201ENST00000273062 TNXBP22105 4242 aa8.05□□□□□ -1.12
CTDSP1-201ENST00000273062 RYR1P21817 5038 aa8.04□□□□□ -1.12
CTDSP1-201ENST00000273062 Q5VSD8 79 aa8.02□□□□□ -1.12
CTDSP1-201ENST00000273062 KRTAP3-3Q9BYR6 98 aa8.02□□□□□ -1.12
CTDSP1-201ENST00000273062 KIAA1109Q2LD37 5005 aa8.02□□□□□ -1.13
CTDSP1-201ENST00000273062 FAT3Q8TDW7 4589 aa7.98□□□□□ -1.13
CTDSP1-201ENST00000273062 MYCBP2O75592 4640 aa7.97□□□□□ -1.13
CTDSP1-201ENST00000273062 XP32Q5T750 250 aa7.97□□□□□ -1.13
CTDSP1-201ENST00000273062 EPPK1P58107 5090 aaKnown RBP7.96□□□□□ -1.13
CTDSP1-201ENST00000273062 KRTAP12-1P59990 96 aa7.92□□□□□ -1.14
CTDSP1-201ENST00000273062 KRTAP10-8P60410 259 aa7.91□□□□□ -1.14
CTDSP1-201ENST00000273062 MT1HL1P0DM35 61 aa7.78□□□□□ -1.16
CTDSP1-201ENST00000273062 PLAC4Q8WY50 150 aa7.78□□□□□ -1.16
CTDSP1-201ENST00000273062 KRTAP4-5Q9BYR2 181 aa7.7□□□□□ -1.18
CTDSP1-201ENST00000273062 ABCA13Q86UQ4 5058 aa7.69□□□□□ -1.18
CTDSP1-201ENST00000273062 LPAP08519 4548 aa7.67□□□□□ -1.18
CTDSP1-201ENST00000273062 LRP2P98164 4655 aa7.62□□□□□ -1.19
CTDSP1-201ENST00000273062 M0QZ58 72 aa7.47□□□□□ -1.21
CTDSP1-201ENST00000273062 SEC61BP60468 96 aaKnown RBP7.47□□□□□ -1.21
CTDSP1-201ENST00000273062 HERC2O95714 4834 aa7.44□□□□□ -1.22
CTDSP1-201ENST00000273062 BIRC6Q9NR09 4857 aa7.32□□□□□ -1.24
CTDSP1-201ENST00000273062 J3QL48 77 aa7.31□□□□□ -1.24
CTDSP1-201ENST00000273062 R4GN34 69 aa7.25□□□□□ -1.25
CTDSP1-201ENST00000273062 KRTAP4-1Q9BYQ7 146 aa7.24□□□□□ -1.25
CTDSP1-201ENST00000273062 MUC17Q685J3 4493 aa7.23□□□□□ -1.25
CTDSP1-201ENST00000273062 LORP23490 312 aaPredicted RBP7.21□□□□□ -1.26
CTDSP1-201ENST00000273062 MUC2Q02817 5179 aa7.2□□□□□ -1.26
CTDSP1-201ENST00000273062 PCLOQ9Y6V0 5065 aa7.19□□□□□ -1.26
CTDSP1-201ENST00000273062 HERC1Q15751 4861 aa7.16□□□□□ -1.26
CTDSP1-201ENST00000273062 PP632Q6XCG6 107 aa7.14□□□□□ -1.27
CTDSP1-201ENST00000273062 SPRR5A0A1B0GTR4 108 aa7.08□□□□□ -1.28
CTDSP1-201ENST00000273062 PRO2289Q9P1D8 64 aa7.06□□□□□ -1.28
CTDSP1-201ENST00000273062 CAMK2N1Q7Z7J9 78 aa7.03□□□□□ -1.28
CTDSP1-201ENST00000273062 KRTAP19-2Q3LHN2 52 aa7.02□□□□□ -1.29
CTDSP1-201ENST00000273062 HMCN2Q8NDA2 5059 aa7.02□□□□□ -1.29
CTDSP1-201ENST00000273062 FAT4Q6V0I7 4981 aa6.86□□□□□ -1.31
CTDSP1-201ENST00000273062 FLGP20930 4061 aaPredicted RBP6.84□□□□□ -1.31
CTDSP1-201ENST00000273062 UBR4Q5T4S7 5183 aa6.83□□□□□ -1.32
CTDSP1-201ENST00000273062 RNF213Q63HN8 5207 aa6.79□□□□□ -1.32
CTDSP1-201ENST00000273062 TNP1P09430 55 aa6.74□□□□□ -1.33
CTDSP1-201ENST00000273062 INE1O15225 51 aa6.72□□□□□ -1.33
CTDSP1-201ENST00000273062 LCE2CQ5TA81 110 aa6.71□□□□□ -1.34
CTDSP1-201ENST00000273062 KRTAP23-1A1A580 65 aa6.63□□□□□ -1.35
CTDSP1-201ENST00000273062 MT1HP80294 61 aa6.53□□□□□ -1.36
CTDSP1-201ENST00000273062 M0R2T5 61 aa6.52□□□□□ -1.37
CTDSP1-201ENST00000273062 LCE3AQ5TA76 89 aa6.45□□□□□ -1.38
CTDSP1-201ENST00000273062 KRTAP19-1Q8IUB9 90 aa6.39□□□□□ -1.39
CTDSP1-201ENST00000273062 MT1FP04733 61 aa6.39□□□□□ -1.39
CTDSP1-201ENST00000273062 MT2AP02795 61 aa6.37□□□□□ -1.39
CTDSP1-201ENST00000273062 SPRR2GQ9BYE4 73 aa6.35□□□□□ -1.39
CTDSP1-201ENST00000273062 KRTAP9-8Q9BYQ0 159 aa6.35□□□□□ -1.39
CTDSP1-201ENST00000273062 KRTAP10-10P60014 251 aa6.33□□□□□ -1.4
CTDSP1-201ENST00000273062 KRTAP10-12P60413 245 aa6.15□□□□□ -1.42
CTDSP1-201ENST00000273062 KRTAP8-1Q8IUC2 63 aa6.14□□□□□ -1.43
CTDSP1-201ENST00000273062 MT1BP07438 61 aa6.1□□□□□ -1.43
CTDSP1-201ENST00000273062 KRTAP19-8Q3LI54 63 aa6.1□□□□□ -1.43
CTDSP1-201ENST00000273062 KRTAP9-3Q9BYQ3 159 aa6.08□□□□□ -1.44
CTDSP1-201ENST00000273062 KRTAP12-3P60328 96 aa6.03□□□□□ -1.44
CTDSP1-201ENST00000273062 KRTAP10-5P60370 271 aa6□□□□□ -1.45
CTDSP1-201ENST00000273062 MT1XP80297 61 aa6□□□□□ -1.45
CTDSP1-201ENST00000273062 USH2AO75445 5202 aa5.99□□□□□ -1.45
CTDSP1-201ENST00000273062 LCE2AQ5TA79 106 aaPredicted RBP5.94□□□□□ -1.46
CTDSP1-201ENST00000273062 LCE2BO14633 110 aa5.92□□□□□ -1.46
CTDSP1-201ENST00000273062 KRTAP10-7P60409 375 aaPredicted RBP5.85□□□□□ -1.47
CTDSP1-201ENST00000273062 KRTAP9-6A8MVA2 160 aa5.76□□□□□ -1.49
CTDSP1-201ENST00000273062 KMT2DO14686 5537 aa5.74□□□□□ -1.49
CTDSP1-201ENST00000273062 LCE3CQ5T5A8 94 aa5.7□□□□□ -1.5
CTDSP1-201ENST00000273062 KRTAP2-3P0C7H8 128 aa5.64□□□□□ -1.51
CTDSP1-201ENST00000273062 KRTAP2-4Q9BYR9 128 aa5.64□□□□□ -1.51
CTDSP1-201ENST00000273062 KRTAP2-1Q9BYU5 128 aa5.64□□□□□ -1.51
CTDSP1-201ENST00000273062 KRTAP19-5Q3LI72 72 aa5.6□□□□□ -1.51
CTDSP1-201ENST00000273062 FSIP2Q5CZC0 6907 aa5.59□□□□□ -1.52
CTDSP1-201ENST00000273062 KRTAP4-8A0A0G2JLE6 195 aa5.58□□□□□ -1.52
CTDSP1-201ENST00000273062 KRTAP4-8Q9BYQ9 185 aa5.58□□□□□ -1.52
CTDSP1-201ENST00000273062 SSPOA2VEC9 5147 aa5.56□□□□□ -1.52
CTDSP1-201ENST00000273062 KRTAP4-7Q9BYR0 210 aa5.48□□□□□ -1.53
CTDSP1-201ENST00000273062 LCE2DQ5TA82 110 aaPredicted RBP5.39□□□□□ -1.55
CTDSP1-201ENST00000273062 KRTAP19-7Q3SYF9 63 aa5.35□□□□□ -1.55
CTDSP1-201ENST00000273062 KRTAP19-6Q3LI70 58 aa5.31□□□□□ -1.56
CTDSP1-201ENST00000273062 KRTAP12-4P60329 112 aa5.25□□□□□ -1.57
CTDSP1-201ENST00000273062 FCGBPQ9Y6R7 5405 aaPredicted RBP5.21□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms