RNA–Protein interactions for RNA: ENST00000269397.8

CBX4-201, Transcript of chromobox 4, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CBX4, Length 2,664 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-201ENST00000269397 HSPG2P98160 4391 aa14.17□□□□□ -0.14
CBX4-201ENST00000269397 KRTAP13-4Q3LI77 160 aa14.17□□□□□ -0.14
CBX4-201ENST00000269397 FAT3Q8TDW7 4589 aa14.16□□□□□ -0.14
CBX4-201ENST00000269397 ROMO1P60602 79 aa14.11□□□□□ -0.15
CBX4-201ENST00000269397 KMT2CQ8NEZ4 4911 aaKnown RBP14.11□□□□□ -0.15
CBX4-201ENST00000269397 MYCBP2O75592 4640 aa14.09□□□□□ -0.15
CBX4-201ENST00000269397 KRTAP10-8P60410 259 aa14.09□□□□□ -0.15
CBX4-201ENST00000269397 RYR2Q92736 4967 aa14.08□□□□□ -0.16
CBX4-201ENST00000269397 KRTAP21-3Q3LHN1 58 aa14.07□□□□□ -0.16
CBX4-201ENST00000269397 RPL37P61927 97 aaKnown RBP14.07□□□□□ -0.16
CBX4-201ENST00000269397 KRTAP3-2Q9BYR7 98 aa14.04□□□□□ -0.16
CBX4-201ENST00000269397 TNXBP22105 4242 aa14.03□□□□□ -0.16
CBX4-201ENST00000269397 S4R3F8 94 aa13.97□□□□□ -0.17
CBX4-201ENST00000269397 P0C880 135 aa13.94□□□□□ -0.18
CBX4-201ENST00000269397 XP32Q5T750 250 aa13.92□□□□□ -0.18
CBX4-201ENST00000269397 TPRXLQ17RH7 258 aa13.84□□□□□ -0.19
CBX4-201ENST00000269397 C10orf95Q9H7T3 257 aa13.81□□□□□ -0.2
CBX4-201ENST00000269397 Q5VSD8 79 aa13.77□□□□□ -0.21
CBX4-201ENST00000269397 KRTAP12-2P59991 146 aa13.72□□□□□ -0.21
CBX4-201ENST00000269397 LPAP08519 4548 aa13.7□□□□□ -0.22
CBX4-201ENST00000269397 SPINT4Q6UDR6 99 aa13.65□□□□□ -0.22
CBX4-201ENST00000269397 RYR3Q15413 4870 aa13.63□□□□□ -0.23
CBX4-201ENST00000269397 KRTAP17-1Q9BYP8 105 aa13.59□□□□□ -0.23
CBX4-201ENST00000269397 KRTAP12-1P59990 96 aa13.54□□□□□ -0.24
CBX4-201ENST00000269397 LRP2P98164 4655 aa13.51□□□□□ -0.25
CBX4-201ENST00000269397 RYR1P21817 5038 aa13.47□□□□□ -0.25
CBX4-201ENST00000269397 KIAA1109Q2LD37 5005 aa13.46□□□□□ -0.25
CBX4-201ENST00000269397 MT1HL1P0DM35 61 aa13.42□□□□□ -0.26
CBX4-201ENST00000269397 M0QZ58 72 aa13.27□□□□□ -0.29
CBX4-201ENST00000269397 KRTAP15-1Q3LI76 137 aa13.26□□□□□ -0.29
CBX4-201ENST00000269397 EPPK1P58107 5090 aaKnown RBP13.17□□□□□ -0.3
CBX4-201ENST00000269397 NDUFAF8A1L188 74 aa13.17□□□□□ -0.3
CBX4-201ENST00000269397 ABCA13Q86UQ4 5058 aa13.1□□□□□ -0.31
CBX4-201ENST00000269397 R4GN34 69 aa13.04□□□□□ -0.32
CBX4-201ENST00000269397 LORP23490 312 aaPredicted RBP12.94□□□□□ -0.34
CBX4-201ENST00000269397 KRTAP4-5Q9BYR2 181 aa12.9□□□□□ -0.34
CBX4-201ENST00000269397 MUC17Q685J3 4493 aa12.75□□□□□ -0.37
CBX4-201ENST00000269397 KRTAP4-1Q9BYQ7 146 aa12.71□□□□□ -0.38
CBX4-201ENST00000269397 SEC61BP60468 96 aaKnown RBP12.65□□□□□ -0.39
CBX4-201ENST00000269397 PLAC4Q8WY50 150 aa12.57□□□□□ -0.4
CBX4-201ENST00000269397 CAMK2N1Q7Z7J9 78 aa12.44□□□□□ -0.42
CBX4-201ENST00000269397 MUC2Q02817 5179 aa12.43□□□□□ -0.42
CBX4-201ENST00000269397 J3QL48 77 aa12.42□□□□□ -0.42
CBX4-201ENST00000269397 KRTAP19-2Q3LHN2 52 aa12.4□□□□□ -0.42
CBX4-201ENST00000269397 HERC2O95714 4834 aa12.38□□□□□ -0.43
CBX4-201ENST00000269397 PP632Q6XCG6 107 aa12.19□□□□□ -0.46
CBX4-201ENST00000269397 FLGP20930 4061 aaPredicted RBP12.09□□□□□ -0.47
CBX4-201ENST00000269397 LUZP6Q538Z0 58 aa12.03□□□□□ -0.48
CBX4-201ENST00000269397 PCLOQ9Y6V0 5065 aa11.97□□□□□ -0.49
CBX4-201ENST00000269397 HERC1Q15751 4861 aa11.93□□□□□ -0.5
CBX4-201ENST00000269397 TNP1P09430 55 aa11.92□□□□□ -0.5
CBX4-201ENST00000269397 BIRC6Q9NR09 4857 aa11.87□□□□□ -0.51
CBX4-201ENST00000269397 FAT4Q6V0I7 4981 aa11.77□□□□□ -0.53
CBX4-201ENST00000269397 HMCN2Q8NDA2 5059 aa11.64□□□□□ -0.55
CBX4-201ENST00000269397 KRTAP23-1A1A580 65 aa11.6□□□□□ -0.55
CBX4-201ENST00000269397 A0A0A0MQY5 61 aa11.58□□□□□ -0.56
CBX4-201ENST00000269397 LCE2CQ5TA81 110 aa11.54□□□□□ -0.56
CBX4-201ENST00000269397 SPRR5A0A1B0GTR4 108 aa11.53□□□□□ -0.56
CBX4-201ENST00000269397 KRTAP19-1Q8IUB9 90 aa11.5□□□□□ -0.57
CBX4-201ENST00000269397 SPRR2GQ9BYE4 73 aa11.47□□□□□ -0.57
CBX4-201ENST00000269397 RNF213Q63HN8 5207 aa11.46□□□□□ -0.57
CBX4-201ENST00000269397 M0R2T5 61 aa11.42□□□□□ -0.58
CBX4-201ENST00000269397 LCE3AQ5TA76 89 aa11.36□□□□□ -0.59
CBX4-201ENST00000269397 UBR4Q5T4S7 5183 aa11.35□□□□□ -0.59
CBX4-201ENST00000269397 MT1HP80294 61 aa11.21□□□□□ -0.62
CBX4-201ENST00000269397 KRTAP10-10P60014 251 aa11.2□□□□□ -0.62
CBX4-201ENST00000269397 MT1FP04733 61 aa11.19□□□□□ -0.62
CBX4-201ENST00000269397 MT2AP02795 61 aa11.13□□□□□ -0.63
CBX4-201ENST00000269397 KRTAP9-8Q9BYQ0 159 aa11□□□□□ -0.65
CBX4-201ENST00000269397 KRTAP8-1Q8IUC2 63 aa10.92□□□□□ -0.66
CBX4-201ENST00000269397 KRTAP10-5P60370 271 aa10.88□□□□□ -0.67
CBX4-201ENST00000269397 KRTAP19-8Q3LI54 63 aa10.87□□□□□ -0.67
CBX4-201ENST00000269397 MT1XP80297 61 aa10.85□□□□□ -0.67
CBX4-201ENST00000269397 MT1BP07438 61 aa10.85□□□□□ -0.67
CBX4-201ENST00000269397 KRTAP12-3P60328 96 aa10.74□□□□□ -0.69
CBX4-201ENST00000269397 KRTAP10-12P60413 245 aa10.73□□□□□ -0.69
CBX4-201ENST00000269397 KRTAP10-7P60409 375 aaPredicted RBP10.67□□□□□ -0.7
CBX4-201ENST00000269397 KRTAP9-3Q9BYQ3 159 aa10.5□□□□□ -0.73
CBX4-201ENST00000269397 PRO2289Q9P1D8 64 aa10.45□□□□□ -0.74
CBX4-201ENST00000269397 INE1O15225 51 aa10.33□□□□□ -0.76
CBX4-201ENST00000269397 KMT2DO14686 5537 aa10.28□□□□□ -0.76
CBX4-201ENST00000269397 USH2AO75445 5202 aa10.25□□□□□ -0.77
CBX4-201ENST00000269397 KRTAP19-5Q3LI72 72 aa10.24□□□□□ -0.77
CBX4-201ENST00000269397 LCE2BO14633 110 aa10.11□□□□□ -0.79
CBX4-201ENST00000269397 LCE3CQ5T5A8 94 aa10.11□□□□□ -0.79
CBX4-201ENST00000269397 KRTAP4-8A0A0G2JLE6 195 aa10.01□□□□□ -0.81
CBX4-201ENST00000269397 KRTAP4-8Q9BYQ9 185 aa10.01□□□□□ -0.81
CBX4-201ENST00000269397 KRTAP9-6A8MVA2 160 aa9.9□□□□□ -0.82
CBX4-201ENST00000269397 KRTAP4-7Q9BYR0 210 aa9.77□□□□□ -0.85
CBX4-201ENST00000269397 LCE2AQ5TA79 106 aaPredicted RBP9.73□□□□□ -0.85
CBX4-201ENST00000269397 KRTAP19-7Q3SYF9 63 aa9.67□□□□□ -0.86
CBX4-201ENST00000269397 KRTAP2-3P0C7H8 128 aa9.49□□□□□ -0.89
CBX4-201ENST00000269397 KRTAP2-4Q9BYR9 128 aa9.49□□□□□ -0.89
CBX4-201ENST00000269397 KRTAP2-1Q9BYU5 128 aa9.49□□□□□ -0.89
CBX4-201ENST00000269397 FSIP2Q5CZC0 6907 aa9.45□□□□□ -0.9
CBX4-201ENST00000269397 MT1LQ93083 61 aa9.39□□□□□ -0.91
CBX4-201ENST00000269397 MT1EP04732 61 aa9.34□□□□□ -0.91
CBX4-201ENST00000269397 SSPOA2VEC9 5147 aa9.28□□□□□ -0.92
CBX4-201ENST00000269397 LOC100996750A0A140TA64 210 aa9.09□□□□□ -0.95
CBX4-201ENST00000269397 KRTAP19-4Q3LI73 84 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms