RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 A8MUN3 132 aa5.99□□□□□ -1.45
SS18-202ENST00000269138 SERP2Q8N6R1 65 aa5.99□□□□□ -1.45
SS18-202ENST00000269138 SVIPQ8NHG7 77 aa5.99□□□□□ -1.45
SS18-202ENST00000269138 KRTAP9-3Q9BYQ3 159 aa5.99□□□□□ -1.45
SS18-202ENST00000269138 SNURFQ9Y675 71 aa5.98□□□□□ -1.45
SS18-202ENST00000269138 C20orf197Q8N268 126 aa5.94□□□□□ -1.46
SS18-202ENST00000269138 DMAC1Q96GE9 116 aa5.94□□□□□ -1.46
SS18-202ENST00000269138 NDUFC1O43677 76 aa5.92□□□□□ -1.46
SS18-202ENST00000269138 KRTAP9-6A0A140TA67 174 aa5.87□□□□□ -1.47
SS18-202ENST00000269138 COX7CP15954 63 aa5.87□□□□□ -1.47
SS18-202ENST00000269138 CRCT1Q9UGL9 99 aa5.87□□□□□ -1.47
SS18-202ENST00000269138 FSIP2Q5CZC0 6907 aa5.86□□□□□ -1.47
SS18-202ENST00000269138 USH2AO75445 5202 aa5.84□□□□□ -1.47
SS18-202ENST00000269138 ACYP2P14621 99 aa5.83□□□□□ -1.48
SS18-202ENST00000269138 SPANXA2-OT1Q8N9U9 137 aa5.81□□□□□ -1.48
SS18-202ENST00000269138 KRTAP19-1Q8IUB9 90 aa5.79□□□□□ -1.48
SS18-202ENST00000269138 ANAPC13Q9BS18 74 aa5.79□□□□□ -1.48
SS18-202ENST00000269138 CYSTM1Q9H1C7 97 aa5.79□□□□□ -1.48
SS18-202ENST00000269138 H0YAA0 97 aa5.78□□□□□ -1.48
SS18-202ENST00000269138 ADM2Q7Z4H4 148 aa5.77□□□□□ -1.49
SS18-202ENST00000269138 H7BZZ5 65 aa5.74□□□□□ -1.49
SS18-202ENST00000269138 SPRR2GQ9BYE4 73 aa5.74□□□□□ -1.49
SS18-202ENST00000269138 CHKB-CPT1BH3BT56 60 aa5.73□□□□□ -1.49
SS18-202ENST00000269138 SSPOA2VEC9 5147 aa5.72□□□□□ -1.49
SS18-202ENST00000269138 CCDC179H3BU77 68 aa5.71□□□□□ -1.5
SS18-202ENST00000269138 LOC100996750A0A140TA64 210 aa5.69□□□□□ -1.5
SS18-202ENST00000269138 P0C880 135 aa5.69□□□□□ -1.5
SS18-202ENST00000269138 KRTAP4-6Q9BYQ5 205 aa5.69□□□□□ -1.5
SS18-202ENST00000269138 CRIPTQ9P021 101 aa5.69□□□□□ -1.5
SS18-202ENST00000269138 SPTSSBQ8NFR3 76 aa5.69□□□□□ -1.5
SS18-202ENST00000269138 KRTAP19-8Q3LI54 63 aa5.67□□□□□ -1.5
SS18-202ENST00000269138 COA5Q86WW8 74 aa5.66□□□□□ -1.5
SS18-202ENST00000269138 MT1BP07438 61 aa5.65□□□□□ -1.5
SS18-202ENST00000269138 KRTAP19-6Q3LI70 58 aa5.63□□□□□ -1.51
SS18-202ENST00000269138 Q5VV11 94 aa5.63□□□□□ -1.51
SS18-202ENST00000269138 FCGBPQ9Y6R7 5405 aaPredicted RBP5.58□□□□□ -1.52
SS18-202ENST00000269138 R4GN34 69 aa5.58□□□□□ -1.52
SS18-202ENST00000269138 M0QZ58 72 aa5.56□□□□□ -1.52
SS18-202ENST00000269138 ATP5EP56381 51 aaPredicted RBP5.48□□□□□ -1.53
SS18-202ENST00000269138 LINC01554Q52M75 96 aa5.48□□□□□ -1.53
SS18-202ENST00000269138 A6NN06 94 aa5.46□□□□□ -1.54
SS18-202ENST00000269138 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.46□□□□□ -1.54
SS18-202ENST00000269138 KRTAP10-5P60370 271 aa5.45□□□□□ -1.54
SS18-202ENST00000269138 TMEM258P61165 79 aa5.45□□□□□ -1.54
SS18-202ENST00000269138 KRTAP13-4Q3LI77 160 aa5.43□□□□□ -1.54
SS18-202ENST00000269138 SEC61GP60059 68 aa5.43□□□□□ -1.54
SS18-202ENST00000269138 PLAC4Q8WY50 150 aa5.43□□□□□ -1.54
SS18-202ENST00000269138 SERP1Q9Y6X1 66 aa5.42□□□□□ -1.54
SS18-202ENST00000269138 MT1XP80297 61 aa5.36□□□□□ -1.55
SS18-202ENST00000269138 A0A1B0GU33 70 aa5.34□□□□□ -1.55
SS18-202ENST00000269138 A0A1B0GU69 56 aa5.34□□□□□ -1.55
SS18-202ENST00000269138 SPATA8Q6RVD6 105 aa5.33□□□□□ -1.56
SS18-202ENST00000269138 KRTAP9-7A8MTY7 169 aa5.3□□□□□ -1.56
SS18-202ENST00000269138 PRO2289Q9P1D8 64 aa5.29□□□□□ -1.56
SS18-202ENST00000269138 MACF1Q9UPN3 7388 aaKnown RBP5.29□□□□□ -1.56
SS18-202ENST00000269138 A0A0D9SG42 100 aa5.28□□□□□ -1.56
SS18-202ENST00000269138 PCP4P48539 62 aa5.28□□□□□ -1.56
SS18-202ENST00000269138 LINC01558Q9Y6Z2 57 aa5.28□□□□□ -1.56
SS18-202ENST00000269138 KRTAP4-8Q9BYQ9 185 aa5.25□□□□□ -1.57
SS18-202ENST00000269138 PRR15LQ9BU68 103 aa5.23□□□□□ -1.57
SS18-202ENST00000269138 SYNE2Q8WXH0 6885 aaKnown RBP5.21□□□□□ -1.58
SS18-202ENST00000269138 A8MU10 97 aa5.19□□□□□ -1.58
SS18-202ENST00000269138 KRTAP12-1P59990 96 aa5.18□□□□□ -1.58
SS18-202ENST00000269138 KRTAP6-3Q3LI67 103 aa5.18□□□□□ -1.58
SS18-202ENST00000269138 SPINT4Q6UDR6 99 aa5.18□□□□□ -1.58
SS18-202ENST00000269138 SMIM26A0A096LP01 95 aa5.17□□□□□ -1.58
SS18-202ENST00000269138 CAMK2N1Q7Z7J9 78 aa5.17□□□□□ -1.58
SS18-202ENST00000269138 KRTAP12-2P59991 146 aa5.15□□□□□ -1.58
SS18-202ENST00000269138 KRTAP10-7P60409 375 aaPredicted RBP5.13□□□□□ -1.59
SS18-202ENST00000269138 Q1T7F1 81 aa5.1□□□□□ -1.59
SS18-202ENST00000269138 UQCR11O14957 56 aa5.08□□□□□ -1.6
SS18-202ENST00000269138 PSPHP1O15172 72 aa5.08□□□□□ -1.6
SS18-202ENST00000269138 V9GYY9 64 aa5.08□□□□□ -1.6
SS18-202ENST00000269138 KRTAP10-12P60413 245 aa5.07□□□□□ -1.6
SS18-202ENST00000269138 KRTAP4-8A0A0G2JLE6 195 aa5.07□□□□□ -1.6
SS18-202ENST00000269138 KMT2DO14686 5537 aa5.06□□□□□ -1.6
SS18-202ENST00000269138 RPS28P62857 69 aaKnown RBP5.06□□□□□ -1.6
SS18-202ENST00000269138 KRTAP4-12Q9BQ66 201 aa5.06□□□□□ -1.6
SS18-202ENST00000269138 KRTAP5-9P26371 169 aa5.04□□□□□ -1.6
SS18-202ENST00000269138 KRTAP8-1Q8IUC2 63 aa5.02□□□□□ -1.61
SS18-202ENST00000269138 MIR22HGQ0VDD5 57 aa5.01□□□□□ -1.61
SS18-202ENST00000269138 LCE3BQ5TA77 95 aa5□□□□□ -1.61
SS18-202ENST00000269138 SPRR2FQ96RM1 72 aa4.97□□□□□ -1.61
SS18-202ENST00000269138 C10orf95Q9H7T3 257 aa4.94□□□□□ -1.62
SS18-202ENST00000269138 MUC12Q9UKN1 5478 aa4.92□□□□□ -1.62
SS18-202ENST00000269138 KRTAP9-9Q9BYP9 154 aa4.92□□□□□ -1.62
SS18-202ENST00000269138 KRTAP9-4Q9BYQ2 154 aa4.92□□□□□ -1.62
SS18-202ENST00000269138 A6NED7 52 aa4.9□□□□□ -1.63
SS18-202ENST00000269138 NEBP20929 6669 aa4.89□□□□□ -1.63
SS18-202ENST00000269138 MDN1Q9NU22 5596 aa4.85□□□□□ -1.63
SS18-202ENST00000269138 SPRR2EP22531 72 aa4.83□□□□□ -1.64
SS18-202ENST00000269138 SPRR2BP35325 72 aa4.83□□□□□ -1.64
SS18-202ENST00000269138 SPRR2AP35326 72 aa4.83□□□□□ -1.64
SS18-202ENST00000269138 K7ERS5 55 aa4.82□□□□□ -1.64
SS18-202ENST00000269138 TNP1P09430 55 aa4.82□□□□□ -1.64
SS18-202ENST00000269138 LCE1AQ5T7P2 110 aa4.82□□□□□ -1.64
SS18-202ENST00000269138 KRTAP19-7Q3SYF9 63 aa4.79□□□□□ -1.64
SS18-202ENST00000269138 LCE3AQ5TA76 89 aa4.76□□□□□ -1.65
SS18-202ENST00000269138 KRTAP19-5Q3LI72 72 aa4.74□□□□□ -1.65
SS18-202ENST00000269138 MT1EP04732 61 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms