RNA–Protein interactions for RNA: ENST00000265619.6

VAPB-201, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 3,596 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-201ENST00000265619 KRTAP15-1Q3LI76 137 aa4.77□□□□□ -1.65
VAPB-201ENST00000265619 KRTAP3-1Q9BYR8 98 aa4.76□□□□□ -1.65
VAPB-201ENST00000265619 FAT1Q14517 4588 aa4.76□□□□□ -1.65
VAPB-201ENST00000265619 CAMK2N1Q7Z7J9 78 aa4.75□□□□□ -1.65
VAPB-201ENST00000265619 FAT2Q9NYQ8 4349 aa4.75□□□□□ -1.65
VAPB-201ENST00000265619 KRTAP13-2Q52LG2 175 aa4.74□□□□□ -1.65
VAPB-201ENST00000265619 VPS13BQ7Z7G8 4022 aa4.73□□□□□ -1.65
VAPB-201ENST00000265619 PKD1P98161 4303 aa4.72□□□□□ -1.65
VAPB-201ENST00000265619 COX6B2Q6YFQ2 88 aa4.72□□□□□ -1.65
VAPB-201ENST00000265619 DYNC1H1Q14204 4646 aaKnown RBP4.72□□□□□ -1.65
VAPB-201ENST00000265619 RYR2Q92736 4967 aa4.71□□□□□ -1.66
VAPB-201ENST00000265619 KRTAP13-4Q3LI77 160 aa4.69□□□□□ -1.66
VAPB-201ENST00000265619 RYR3Q15413 4870 aa4.69□□□□□ -1.66
VAPB-201ENST00000265619 A0A0D9SG42 100 aa4.68□□□□□ -1.66
VAPB-201ENST00000265619 C9orf92A6NGG3 77 aa4.68□□□□□ -1.66
VAPB-201ENST00000265619 A0A1B0GVY2 172 aa4.68□□□□□ -1.66
VAPB-201ENST00000265619 KRTAP1-4P0C5Y4 121 aa4.65□□□□□ -1.66
VAPB-201ENST00000265619 Q5VSD8 79 aa4.65□□□□□ -1.66
VAPB-201ENST00000265619 KIAA1109Q2LD37 5005 aa4.65□□□□□ -1.67
VAPB-201ENST00000265619 APOBP04114 4563 aaKnown RBP4.63□□□□□ -1.67
VAPB-201ENST00000265619 LORP23490 312 aaPredicted RBP4.6□□□□□ -1.67
VAPB-201ENST00000265619 RPL37P61927 97 aaKnown RBP4.59□□□□□ -1.67
VAPB-201ENST00000265619 LRP1Q07954 4544 aaKnown RBP4.59□□□□□ -1.67
VAPB-201ENST00000265619 KRTAP10-6P60371 365 aaPredicted RBP4.59□□□□□ -1.67
VAPB-201ENST00000265619 EPPK1P58107 5090 aaKnown RBP4.57□□□□□ -1.68
VAPB-201ENST00000265619 MYCBP2O75592 4640 aa4.56□□□□□ -1.68
VAPB-201ENST00000265619 KRTAP12-2P59991 146 aa4.53□□□□□ -1.68
VAPB-201ENST00000265619 KRTAP17-1Q9BYP8 105 aa4.53□□□□□ -1.68
VAPB-201ENST00000265619 KRTAP10-4P60372 401 aaPredicted RBP4.51□□□□□ -1.69
VAPB-201ENST00000265619 RYR1P21817 5038 aa4.5□□□□□ -1.69
VAPB-201ENST00000265619 S4R3F8 94 aa4.49□□□□□ -1.69
VAPB-201ENST00000265619 KRTAP4-5Q9BYR2 181 aa4.49□□□□□ -1.69
VAPB-201ENST00000265619 FAT3Q8TDW7 4589 aa4.48□□□□□ -1.69
VAPB-201ENST00000265619 HSPG2P98160 4391 aa4.48□□□□□ -1.69
VAPB-201ENST00000265619 PKHD1L1Q86WI1 4243 aa4.43□□□□□ -1.7
VAPB-201ENST00000265619 XP32Q5T750 250 aa4.42□□□□□ -1.7
VAPB-201ENST00000265619 KRTAP12-1P59990 96 aa4.42□□□□□ -1.7
VAPB-201ENST00000265619 KRTAP23-1A1A580 65 aa4.39□□□□□ -1.71
VAPB-201ENST00000265619 KRTAP10-8P60410 259 aa4.37□□□□□ -1.71
VAPB-201ENST00000265619 LPAP08519 4548 aa4.35□□□□□ -1.71
VAPB-201ENST00000265619 ABCA13Q86UQ4 5058 aa4.34□□□□□ -1.72
VAPB-201ENST00000265619 MT1HL1P0DM35 61 aa4.33□□□□□ -1.72
VAPB-201ENST00000265619 RPS29P62273 56 aaKnown RBP4.32□□□□□ -1.72
VAPB-201ENST00000265619 HERC2O95714 4834 aa4.31□□□□□ -1.72
VAPB-201ENST00000265619 PLAC4Q8WY50 150 aa4.31□□□□□ -1.72
VAPB-201ENST00000265619 R4GN34 69 aa4.29□□□□□ -1.72
VAPB-201ENST00000265619 TNXBP22105 4242 aa4.29□□□□□ -1.72
VAPB-201ENST00000265619 LRP2P98164 4655 aa4.28□□□□□ -1.72
VAPB-201ENST00000265619 PRO2289Q9P1D8 64 aa4.25□□□□□ -1.73
VAPB-201ENST00000265619 BIRC6Q9NR09 4857 aa4.21□□□□□ -1.74
VAPB-201ENST00000265619 PCLOQ9Y6V0 5065 aa4.2□□□□□ -1.74
VAPB-201ENST00000265619 HERC1Q15751 4861 aa4.2□□□□□ -1.74
VAPB-201ENST00000265619 M0QZ58 72 aa4.15□□□□□ -1.74
VAPB-201ENST00000265619 MUC2Q02817 5179 aa4.15□□□□□ -1.75
VAPB-201ENST00000265619 RNF213Q63HN8 5207 aa4.06□□□□□ -1.76
VAPB-201ENST00000265619 KRTAP4-1Q9BYQ7 146 aa4.03□□□□□ -1.76
VAPB-201ENST00000265619 UBR4Q5T4S7 5183 aa4□□□□□ -1.77
VAPB-201ENST00000265619 INE1O15225 51 aa3.98□□□□□ -1.77
VAPB-201ENST00000265619 FAT4Q6V0I7 4981 aa3.95□□□□□ -1.78
VAPB-201ENST00000265619 M0R2T5 61 aa3.94□□□□□ -1.78
VAPB-201ENST00000265619 HMCN2Q8NDA2 5059 aa3.92□□□□□ -1.78
VAPB-201ENST00000265619 SPRR5A0A1B0GTR4 108 aa3.92□□□□□ -1.78
VAPB-201ENST00000265619 PP632Q6XCG6 107 aa3.89□□□□□ -1.79
VAPB-201ENST00000265619 MUC17Q685J3 4493 aa3.86□□□□□ -1.79
VAPB-201ENST00000265619 TNP1P09430 55 aa3.75□□□□□ -1.81
VAPB-201ENST00000265619 KRTAP19-2Q3LHN2 52 aa3.72□□□□□ -1.81
VAPB-201ENST00000265619 LCE4AQ5TA78 99 aa3.72□□□□□ -1.81
VAPB-201ENST00000265619 FLGP20930 4061 aaPredicted RBP3.7□□□□□ -1.82
VAPB-201ENST00000265619 KRTAP10-10P60014 251 aa3.69□□□□□ -1.82
VAPB-201ENST00000265619 MT1HP80294 61 aa3.67□□□□□ -1.82
VAPB-201ENST00000265619 FSIP2Q5CZC0 6907 aa3.62□□□□□ -1.83
VAPB-201ENST00000265619 LCE3AQ5TA76 89 aa3.61□□□□□ -1.83
VAPB-201ENST00000265619 MT1FP04733 61 aa3.57□□□□□ -1.84
VAPB-201ENST00000265619 MT2AP02795 61 aa3.56□□□□□ -1.84
VAPB-201ENST00000265619 USH2AO75445 5202 aa3.53□□□□□ -1.84
VAPB-201ENST00000265619 KRTAP9-8Q9BYQ0 159 aa3.5□□□□□ -1.85
VAPB-201ENST00000265619 KRTAP9-6A0A140TA67 174 aa3.48□□□□□ -1.85
VAPB-201ENST00000265619 KRTAP9-7A8MTY7 169 aa3.48□□□□□ -1.85
VAPB-201ENST00000265619 KRTAP19-1Q8IUB9 90 aa3.47□□□□□ -1.85
VAPB-201ENST00000265619 KRTAP10-12P60413 245 aa3.45□□□□□ -1.86
VAPB-201ENST00000265619 LCE3BQ5TA77 95 aa3.42□□□□□ -1.86
VAPB-201ENST00000265619 KRTAP8-1Q8IUC2 63 aa3.4□□□□□ -1.86
VAPB-201ENST00000265619 SPRR2GQ9BYE4 73 aa3.4□□□□□ -1.86
VAPB-201ENST00000265619 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.4□□□□□ -1.87
VAPB-201ENST00000265619 LOC100996750A0A140TA64 210 aa3.39□□□□□ -1.87
VAPB-201ENST00000265619 KRTAP4-6Q9BYQ5 205 aa3.39□□□□□ -1.87
VAPB-201ENST00000265619 KRTAP9-2Q9BYQ4 174 aa3.37□□□□□ -1.87
VAPB-201ENST00000265619 KRTAP12-3P60328 96 aa3.35□□□□□ -1.87
VAPB-201ENST00000265619 KRTAP9-3Q9BYQ3 159 aa3.35□□□□□ -1.87
VAPB-201ENST00000265619 MT1BP07438 61 aa3.33□□□□□ -1.88
VAPB-201ENST00000265619 KMT2DO14686 5537 aa3.32□□□□□ -1.88
VAPB-201ENST00000265619 KRTAP9-4Q9BYQ2 154 aa3.31□□□□□ -1.88
VAPB-201ENST00000265619 KRTAP19-4Q3LI73 84 aa3.29□□□□□ -1.88
VAPB-201ENST00000265619 KRTAP9-9Q9BYP9 154 aa3.28□□□□□ -1.88
VAPB-201ENST00000265619 KRTAP10-5P60370 271 aa3.28□□□□□ -1.88
VAPB-201ENST00000265619 KRTAP4-8Q9BYQ9 185 aa3.27□□□□□ -1.89
VAPB-201ENST00000265619 KRTAP9-6A8MVA2 160 aa3.26□□□□□ -1.89
VAPB-201ENST00000265619 KRTAP19-8Q3LI54 63 aa3.26□□□□□ -1.89
VAPB-201ENST00000265619 KRTAP10-7P60409 375 aaPredicted RBP3.26□□□□□ -1.89
VAPB-201ENST00000265619 MT1XP80297 61 aa3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms