RNA–Protein interactions for RNA: ENST00000250448.2

FOXA1-201, Transcript of forkhead box A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene FOXA1, Length 2,862 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1-201ENST00000250448 FAT3Q8TDW7 4589 aa9.3□□□□□ -0.92
FOXA1-201ENST00000250448 KRTAP4-5Q9BYR2 181 aa9.27□□□□□ -0.92
FOXA1-201ENST00000250448 KRTAP10-8P60410 259 aa9.22□□□□□ -0.93
FOXA1-201ENST00000250448 RPS29P62273 56 aaKnown RBP9.2□□□□□ -0.94
FOXA1-201ENST00000250448 C9orf92A6NGG3 77 aa9.15□□□□□ -0.94
FOXA1-201ENST00000250448 ABCA13Q86UQ4 5058 aa9.15□□□□□ -0.94
FOXA1-201ENST00000250448 MT1HL1P0DM35 61 aa9.14□□□□□ -0.95
FOXA1-201ENST00000250448 BIRC6Q9NR09 4857 aa9.13□□□□□ -0.95
FOXA1-201ENST00000250448 H0YAA0 97 aa9.11□□□□□ -0.95
FOXA1-201ENST00000250448 A8MUU9 505 aa9.11□□□□□ -0.95
FOXA1-201ENST00000250448 C20orf166-AS1Q96NR2 134 aa9.1□□□□□ -0.95
FOXA1-201ENST00000250448 KRTAP25-1Q3LHN0 102 aa9.1□□□□□ -0.95
FOXA1-201ENST00000250448 KRTAP3-1Q9BYR8 98 aa9.07□□□□□ -0.96
FOXA1-201ENST00000250448 HERC2O95714 4834 aa9.05□□□□□ -0.96
FOXA1-201ENST00000250448 A0A1B0GU33 70 aa9.03□□□□□ -0.96
FOXA1-201ENST00000250448 NDUFAF8A1L188 74 aa9.03□□□□□ -0.96
FOXA1-201ENST00000250448 H1FX-AS1Q4G0G2 97 aa9.01□□□□□ -0.97
FOXA1-201ENST00000250448 CRIPTQ9P021 101 aa8.92□□□□□ -0.98
FOXA1-201ENST00000250448 COX6B2Q6YFQ2 88 aa8.9□□□□□ -0.99
FOXA1-201ENST00000250448 LPAP08519 4548 aa8.85□□□□□ -0.99
FOXA1-201ENST00000250448 J3QL48 77 aa8.85□□□□□ -0.99
FOXA1-201ENST00000250448 PCLOQ9Y6V0 5065 aa8.84□□□□□ -0.99
FOXA1-201ENST00000250448 K7ERS5 55 aa8.8□□□□□ -1
FOXA1-201ENST00000250448 XP32Q5T750 250 aa8.8□□□□□ -1
FOXA1-201ENST00000250448 SPINT4Q6UDR6 99 aa8.79□□□□□ -1
FOXA1-201ENST00000250448 LUZP6Q538Z0 58 aa8.79□□□□□ -1
FOXA1-201ENST00000250448 LRP2P98164 4655 aa8.79□□□□□ -1
FOXA1-201ENST00000250448 RPL37P61927 97 aaKnown RBP8.71□□□□□ -1.02
FOXA1-201ENST00000250448 HERC1Q15751 4861 aa8.7□□□□□ -1.02
FOXA1-201ENST00000250448 KRTAP10-6P60371 365 aaPredicted RBP8.67□□□□□ -1.02
FOXA1-201ENST00000250448 KRTAP3-3Q9BYR6 98 aa8.67□□□□□ -1.02
FOXA1-201ENST00000250448 TPRXLQ17RH7 258 aa8.67□□□□□ -1.02
FOXA1-201ENST00000250448 KRTAP13-4Q3LI77 160 aa8.62□□□□□ -1.03
FOXA1-201ENST00000250448 KRTAP15-1Q3LI76 137 aa8.6□□□□□ -1.03
FOXA1-201ENST00000250448 KRTAP3-2Q9BYR7 98 aa8.6□□□□□ -1.03
FOXA1-201ENST00000250448 SEC61BP60468 96 aaKnown RBP8.58□□□□□ -1.04
FOXA1-201ENST00000250448 S4R3F8 94 aa8.58□□□□□ -1.04
FOXA1-201ENST00000250448 A0A0D9SG42 100 aa8.58□□□□□ -1.04
FOXA1-201ENST00000250448 HMCN2Q8NDA2 5059 aa8.47□□□□□ -1.05
FOXA1-201ENST00000250448 MUC2Q02817 5179 aa8.38□□□□□ -1.07
FOXA1-201ENST00000250448 KRTAP4-1Q9BYQ7 146 aa8.37□□□□□ -1.07
FOXA1-201ENST00000250448 KRTAP12-2P59991 146 aa8.36□□□□□ -1.07
FOXA1-201ENST00000250448 C10orf95Q9H7T3 257 aa8.35□□□□□ -1.07
FOXA1-201ENST00000250448 MUC17Q685J3 4493 aa8.34□□□□□ -1.08
FOXA1-201ENST00000250448 KRTAP12-1P59990 96 aa8.29□□□□□ -1.08
FOXA1-201ENST00000250448 UBR4Q5T4S7 5183 aa8.21□□□□□ -1.1
FOXA1-201ENST00000250448 M0QZ58 72 aa8.2□□□□□ -1.1
FOXA1-201ENST00000250448 RNF213Q63HN8 5207 aa8.15□□□□□ -1.1
FOXA1-201ENST00000250448 KRTAP19-2Q3LHN2 52 aa8.06□□□□□ -1.12
FOXA1-201ENST00000250448 FAT4Q6V0I7 4981 aa8.02□□□□□ -1.12
FOXA1-201ENST00000250448 R4GN34 69 aa7.96□□□□□ -1.14
FOXA1-201ENST00000250448 FLGP20930 4061 aaPredicted RBP7.91□□□□□ -1.14
FOXA1-201ENST00000250448 LCE2CQ5TA81 110 aa7.87□□□□□ -1.15
FOXA1-201ENST00000250448 LORP23490 312 aaPredicted RBP7.82□□□□□ -1.16
FOXA1-201ENST00000250448 CAMK2N1Q7Z7J9 78 aa7.74□□□□□ -1.17
FOXA1-201ENST00000250448 MT1HP80294 61 aa7.7□□□□□ -1.18
FOXA1-201ENST00000250448 M0R2T5 61 aa7.69□□□□□ -1.18
FOXA1-201ENST00000250448 PLAC4Q8WY50 150 aa7.69□□□□□ -1.18
FOXA1-201ENST00000250448 PP632Q6XCG6 107 aa7.57□□□□□ -1.2
FOXA1-201ENST00000250448 MT2AP02795 61 aa7.42□□□□□ -1.22
FOXA1-201ENST00000250448 KRTAP9-8Q9BYQ0 159 aa7.42□□□□□ -1.22
FOXA1-201ENST00000250448 PRO2289Q9P1D8 64 aa7.42□□□□□ -1.22
FOXA1-201ENST00000250448 MT1FP04733 61 aa7.41□□□□□ -1.22
FOXA1-201ENST00000250448 KRTAP10-10P60014 251 aa7.39□□□□□ -1.23
FOXA1-201ENST00000250448 TNP1P09430 55 aa7.33□□□□□ -1.24
FOXA1-201ENST00000250448 LCE2AQ5TA79 106 aaPredicted RBP7.29□□□□□ -1.24
FOXA1-201ENST00000250448 KRTAP19-1Q8IUB9 90 aa7.28□□□□□ -1.24
FOXA1-201ENST00000250448 KRTAP23-1A1A580 65 aa7.27□□□□□ -1.25
FOXA1-201ENST00000250448 SPRR2GQ9BYE4 73 aa7.22□□□□□ -1.25
FOXA1-201ENST00000250448 SPRR5A0A1B0GTR4 108 aa7.15□□□□□ -1.27
FOXA1-201ENST00000250448 KRTAP9-3Q9BYQ3 159 aa7.13□□□□□ -1.27
FOXA1-201ENST00000250448 USH2AO75445 5202 aa7□□□□□ -1.29
FOXA1-201ENST00000250448 MT1BP07438 61 aa7□□□□□ -1.29
FOXA1-201ENST00000250448 KRTAP19-8Q3LI54 63 aa7□□□□□ -1.29
FOXA1-201ENST00000250448 LCE2BO14633 110 aa6.98□□□□□ -1.29
FOXA1-201ENST00000250448 LCE3AQ5TA76 89 aa6.93□□□□□ -1.3
FOXA1-201ENST00000250448 INE1O15225 51 aa6.91□□□□□ -1.3
FOXA1-201ENST00000250448 FSIP2Q5CZC0 6907 aa6.81□□□□□ -1.32
FOXA1-201ENST00000250448 MT1XP80297 61 aa6.8□□□□□ -1.32
FOXA1-201ENST00000250448 KRTAP10-5P60370 271 aa6.79□□□□□ -1.32
FOXA1-201ENST00000250448 KRTAP8-1Q8IUC2 63 aa6.75□□□□□ -1.33
FOXA1-201ENST00000250448 SSPOA2VEC9 5147 aa6.68□□□□□ -1.34
FOXA1-201ENST00000250448 KRTAP10-7P60409 375 aaPredicted RBP6.59□□□□□ -1.35
FOXA1-201ENST00000250448 KRTAP10-12P60413 245 aa6.59□□□□□ -1.35
FOXA1-201ENST00000250448 KRTAP12-3P60328 96 aa6.58□□□□□ -1.36
FOXA1-201ENST00000250448 KMT2DO14686 5537 aa6.53□□□□□ -1.36
FOXA1-201ENST00000250448 LCE2DQ5TA82 110 aaPredicted RBP6.49□□□□□ -1.37
FOXA1-201ENST00000250448 KRTAP19-6Q3LI70 58 aa6.41□□□□□ -1.38
FOXA1-201ENST00000250448 KRTAP4-8A0A0G2JLE6 195 aa6.37□□□□□ -1.39
FOXA1-201ENST00000250448 KRTAP4-8Q9BYQ9 185 aa6.37□□□□□ -1.39
FOXA1-201ENST00000250448 FCGBPQ9Y6R7 5405 aaPredicted RBP6.35□□□□□ -1.39
FOXA1-201ENST00000250448 KRTAP9-2Q9BYQ4 174 aa6.34□□□□□ -1.39
FOXA1-201ENST00000250448 KRTAP19-5Q3LI72 72 aa6.24□□□□□ -1.41
FOXA1-201ENST00000250448 LCE3CQ5T5A8 94 aa6.2□□□□□ -1.42
FOXA1-201ENST00000250448 CRCT1Q9UGL9 99 aa6.11□□□□□ -1.43
FOXA1-201ENST00000250448 MACF1Q9UPN3 7388 aaKnown RBP6.07□□□□□ -1.44
FOXA1-201ENST00000250448 KRTAP19-7Q3SYF9 63 aa6.06□□□□□ -1.44
FOXA1-201ENST00000250448 KRTAP9-6A8MVA2 160 aa6□□□□□ -1.45
FOXA1-201ENST00000250448 MUC12Q9UKN1 5478 aa5.98□□□□□ -1.45
FOXA1-201ENST00000250448 SYNE2Q8WXH0 6885 aaKnown RBP5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 100.5 ms