RNA–Protein interactions for RNA: ENST00000249806.10

CLN6-201, Transcript of CLN6, transmembrane ER protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN6, Length 2,243 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-201ENST00000249806 MIR22HGQ0VDD5 57 aa11.2□□□□□ -0.62
CLN6-201ENST00000249806 A6NN06 94 aa11.19□□□□□ -0.62
CLN6-201ENST00000249806 LPAP08519 4548 aa11.17□□□□□ -0.62
CLN6-201ENST00000249806 LRP2P98164 4655 aa11.15□□□□□ -0.62
CLN6-201ENST00000249806 ABCA13Q86UQ4 5058 aa11.14□□□□□ -0.63
CLN6-201ENST00000249806 TPRXLQ17RH7 258 aa11.07□□□□□ -0.64
CLN6-201ENST00000249806 KRTAP3-3Q9BYR6 98 aa11.03□□□□□ -0.64
CLN6-201ENST00000249806 KTN1-AS1Q86SY8 53 aa11.01□□□□□ -0.65
CLN6-201ENST00000249806 A0A1B0GU33 70 aa10.99□□□□□ -0.65
CLN6-201ENST00000249806 H0YAA0 97 aa10.98□□□□□ -0.65
CLN6-201ENST00000249806 H1FX-AS1Q4G0G2 97 aa10.95□□□□□ -0.66
CLN6-201ENST00000249806 S4R3F8 94 aa10.93□□□□□ -0.66
CLN6-201ENST00000249806 HERC2O95714 4834 aa10.84□□□□□ -0.67
CLN6-201ENST00000249806 KRTAP10-6P60371 365 aaPredicted RBP10.82□□□□□ -0.68
CLN6-201ENST00000249806 J3QL48 77 aa10.79□□□□□ -0.68
CLN6-201ENST00000249806 KRTAP3-2Q9BYR7 98 aa10.77□□□□□ -0.68
CLN6-201ENST00000249806 RBM12B-AS1Q9P1G2 102 aa10.77□□□□□ -0.69
CLN6-201ENST00000249806 ADM2Q7Z4H4 148 aa10.74□□□□□ -0.69
CLN6-201ENST00000249806 PRAC1Q96KF2 57 aa10.69□□□□□ -0.7
CLN6-201ENST00000249806 P0C880 135 aa10.68□□□□□ -0.7
CLN6-201ENST00000249806 KRTAP13-4Q3LI77 160 aa10.67□□□□□ -0.7
CLN6-201ENST00000249806 MUC17Q685J3 4493 aa10.65□□□□□ -0.7
CLN6-201ENST00000249806 SEC61BP60468 96 aaKnown RBP10.65□□□□□ -0.71
CLN6-201ENST00000249806 BIRC6Q9NR09 4857 aa10.63□□□□□ -0.71
CLN6-201ENST00000249806 CSAG1Q6PB30 78 aa10.61□□□□□ -0.71
CLN6-201ENST00000249806 KRTAP4-1Q9BYQ7 146 aa10.59□□□□□ -0.71
CLN6-201ENST00000249806 A0A0D9SG42 100 aa10.55□□□□□ -0.72
CLN6-201ENST00000249806 K7ERS5 55 aa10.49□□□□□ -0.73
CLN6-201ENST00000249806 MUC2Q02817 5179 aa10.42□□□□□ -0.74
CLN6-201ENST00000249806 HERC1Q15751 4861 aa10.37□□□□□ -0.75
CLN6-201ENST00000249806 PCLOQ9Y6V0 5065 aa10.35□□□□□ -0.75
CLN6-201ENST00000249806 KRTAP19-2Q3LHN2 52 aa10.34□□□□□ -0.75
CLN6-201ENST00000249806 KRTAP12-2P59991 146 aa10.29□□□□□ -0.76
CLN6-201ENST00000249806 M0QZ58 72 aa10.27□□□□□ -0.76
CLN6-201ENST00000249806 KRTAP12-1P59990 96 aa10.22□□□□□ -0.77
CLN6-201ENST00000249806 ROMO1P60602 79 aa10.22□□□□□ -0.77
CLN6-201ENST00000249806 SPINT4Q6UDR6 99 aa10.21□□□□□ -0.77
CLN6-201ENST00000249806 CRIPTQ9P021 101 aa10.21□□□□□ -0.77
CLN6-201ENST00000249806 HMCN2Q8NDA2 5059 aa10.2□□□□□ -0.78
CLN6-201ENST00000249806 KRTAP25-1Q3LHN0 102 aa10.16□□□□□ -0.78
CLN6-201ENST00000249806 LORP23490 312 aaPredicted RBP10.15□□□□□ -0.78
CLN6-201ENST00000249806 LINC01554Q52M75 96 aa10.15□□□□□ -0.78
CLN6-201ENST00000249806 R4GN34 69 aa10.14□□□□□ -0.79
CLN6-201ENST00000249806 FLGP20930 4061 aaPredicted RBP10.11□□□□□ -0.79
CLN6-201ENST00000249806 FAT4Q6V0I7 4981 aa9.91□□□□□ -0.82
CLN6-201ENST00000249806 C10orf95Q9H7T3 257 aa9.9□□□□□ -0.83
CLN6-201ENST00000249806 LCE2CQ5TA81 110 aa9.86□□□□□ -0.83
CLN6-201ENST00000249806 UBR4Q5T4S7 5183 aa9.8□□□□□ -0.84
CLN6-201ENST00000249806 RNF213Q63HN8 5207 aa9.78□□□□□ -0.84
CLN6-201ENST00000249806 M0R2T5 61 aa9.61□□□□□ -0.87
CLN6-201ENST00000249806 MT1HP80294 61 aa9.6□□□□□ -0.87
CLN6-201ENST00000249806 CAMK2N1Q7Z7J9 78 aa9.58□□□□□ -0.88
CLN6-201ENST00000249806 KRTAP19-1Q8IUB9 90 aa9.41□□□□□ -0.9
CLN6-201ENST00000249806 SPRR2GQ9BYE4 73 aa9.41□□□□□ -0.9
CLN6-201ENST00000249806 MT2AP02795 61 aa9.36□□□□□ -0.91
CLN6-201ENST00000249806 MT1FP04733 61 aa9.36□□□□□ -0.91
CLN6-201ENST00000249806 H3BS24 57 aa9.36□□□□□ -0.91
CLN6-201ENST00000249806 KRTAP9-8Q9BYQ0 159 aa9.35□□□□□ -0.91
CLN6-201ENST00000249806 KRTAP10-10P60014 251 aa9.34□□□□□ -0.91
CLN6-201ENST00000249806 PLAC4Q8WY50 150 aa9.25□□□□□ -0.93
CLN6-201ENST00000249806 KRTAP15-1Q3LI76 137 aa9.19□□□□□ -0.94
CLN6-201ENST00000249806 TNP1P09430 55 aa9.16□□□□□ -0.94
CLN6-201ENST00000249806 PP632Q6XCG6 107 aa9.14□□□□□ -0.95
CLN6-201ENST00000249806 KRTAP19-8Q3LI54 63 aa9.04□□□□□ -0.96
CLN6-201ENST00000249806 MT1BP07438 61 aa8.97□□□□□ -0.97
CLN6-201ENST00000249806 KRTAP9-3Q9BYQ3 159 aa8.97□□□□□ -0.97
CLN6-201ENST00000249806 KRTAP23-1A1A580 65 aa8.92□□□□□ -0.98
CLN6-201ENST00000249806 KRTAP10-5P60370 271 aa8.84□□□□□ -0.99
CLN6-201ENST00000249806 MT1XP80297 61 aa8.82□□□□□ -1
CLN6-201ENST00000249806 NDUFAF8A1L188 74 aa8.81□□□□□ -1
CLN6-201ENST00000249806 LCE3AQ5TA76 89 aa8.76□□□□□ -1.01
CLN6-201ENST00000249806 LCE2AQ5TA79 106 aaPredicted RBP8.76□□□□□ -1.01
CLN6-201ENST00000249806 LCE2BO14633 110 aa8.68□□□□□ -1.02
CLN6-201ENST00000249806 USH2AO75445 5202 aa8.61□□□□□ -1.03
CLN6-201ENST00000249806 KRTAP10-7P60409 375 aaPredicted RBP8.57□□□□□ -1.04
CLN6-201ENST00000249806 KRTAP10-12P60413 245 aa8.52□□□□□ -1.05
CLN6-201ENST00000249806 KRTAP8-1Q8IUC2 63 aa8.52□□□□□ -1.05
CLN6-201ENST00000249806 PRO2289Q9P1D8 64 aa8.52□□□□□ -1.05
CLN6-201ENST00000249806 LUZP6Q538Z0 58 aa8.43□□□□□ -1.06
CLN6-201ENST00000249806 SPRR5A0A1B0GTR4 108 aa8.41□□□□□ -1.06
CLN6-201ENST00000249806 KRTAP12-3P60328 96 aa8.35□□□□□ -1.07
CLN6-201ENST00000249806 KMT2DO14686 5537 aa8.29□□□□□ -1.08
CLN6-201ENST00000249806 KRTAP4-8A0A0G2JLE6 195 aa8.15□□□□□ -1.1
CLN6-201ENST00000249806 KRTAP4-8Q9BYQ9 185 aa8.15□□□□□ -1.1
CLN6-201ENST00000249806 KRTAP19-5Q3LI72 72 aa8.14□□□□□ -1.11
CLN6-201ENST00000249806 SSPOA2VEC9 5147 aa8.04□□□□□ -1.12
CLN6-201ENST00000249806 A0A0A0MQY5 61 aa8.01□□□□□ -1.13
CLN6-201ENST00000249806 FSIP2Q5CZC0 6907 aa8□□□□□ -1.13
CLN6-201ENST00000249806 KRTAP19-7Q3SYF9 63 aa7.87□□□□□ -1.15
CLN6-201ENST00000249806 KRTAP19-6Q3LI70 58 aa7.86□□□□□ -1.15
CLN6-201ENST00000249806 LCE3CQ5T5A8 94 aa7.84□□□□□ -1.15
CLN6-201ENST00000249806 MT1EP04732 61 aa7.66□□□□□ -1.18
CLN6-201ENST00000249806 KRTAP4-7Q9BYR0 210 aa7.64□□□□□ -1.19
CLN6-201ENST00000249806 LCE2DQ5TA82 110 aaPredicted RBP7.61□□□□□ -1.19
CLN6-201ENST00000249806 MT1LQ93083 61 aa7.6□□□□□ -1.19
CLN6-201ENST00000249806 FCGBPQ9Y6R7 5405 aaPredicted RBP7.57□□□□□ -1.2
CLN6-201ENST00000249806 KRTAP9-6A8MVA2 160 aa7.56□□□□□ -1.2
CLN6-201ENST00000249806 KRTAP19-4Q3LI73 84 aa7.44□□□□□ -1.22
CLN6-201ENST00000249806 MUC12Q9UKN1 5478 aa7.39□□□□□ -1.23
CLN6-201ENST00000249806 KRTAP4-3Q9BYR4 195 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms