RNA–Protein interactions for RNA: ENST00000221232.9

CNOT3-201, Transcript of CCR4-NOT transcription complex subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CNOT3, Length 2,852 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT3-201ENST00000221232 TNXBP22105 4242 aa7.66□□□□□ -1.18
CNOT3-201ENST00000221232 COX6B2Q6YFQ2 88 aa7.66□□□□□ -1.18
CNOT3-201ENST00000221232 KRTAP10-8P60410 259 aa7.65□□□□□ -1.18
CNOT3-201ENST00000221232 A0A1B0GU33 70 aa7.65□□□□□ -1.18
CNOT3-201ENST00000221232 RYR3Q15413 4870 aa7.64□□□□□ -1.19
CNOT3-201ENST00000221232 H1FX-AS1Q4G0G2 97 aa7.59□□□□□ -1.19
CNOT3-201ENST00000221232 CRIPTQ9P021 101 aa7.59□□□□□ -1.19
CNOT3-201ENST00000221232 KIAA1109Q2LD37 5005 aa7.57□□□□□ -1.2
CNOT3-201ENST00000221232 XP32Q5T750 250 aa7.57□□□□□ -1.2
CNOT3-201ENST00000221232 ROMO1P60602 79 aa7.55□□□□□ -1.2
CNOT3-201ENST00000221232 RPL37P61927 97 aaKnown RBP7.55□□□□□ -1.2
CNOT3-201ENST00000221232 P0C880 135 aa7.54□□□□□ -1.2
CNOT3-201ENST00000221232 RYR1P21817 5038 aa7.52□□□□□ -1.2
CNOT3-201ENST00000221232 LPAP08519 4548 aa7.51□□□□□ -1.21
CNOT3-201ENST00000221232 KRTAP3-3Q9BYR6 98 aa7.49□□□□□ -1.21
CNOT3-201ENST00000221232 A0A0D9SG42 100 aa7.46□□□□□ -1.21
CNOT3-201ENST00000221232 MT1HL1P0DM35 61 aa7.45□□□□□ -1.22
CNOT3-201ENST00000221232 S4R3F8 94 aa7.43□□□□□ -1.22
CNOT3-201ENST00000221232 LRP2P98164 4655 aa7.43□□□□□ -1.22
CNOT3-201ENST00000221232 KRTAP10-6P60371 365 aaPredicted RBP7.41□□□□□ -1.22
CNOT3-201ENST00000221232 KRTAP13-4Q3LI77 160 aa7.4□□□□□ -1.22
CNOT3-201ENST00000221232 EPPK1P58107 5090 aaKnown RBP7.38□□□□□ -1.23
CNOT3-201ENST00000221232 KRTAP25-1Q3LHN0 102 aa7.37□□□□□ -1.23
CNOT3-201ENST00000221232 KRTAP3-2Q9BYR7 98 aa7.36□□□□□ -1.23
CNOT3-201ENST00000221232 K7ERS5 55 aa7.35□□□□□ -1.23
CNOT3-201ENST00000221232 KRTAP4-5Q9BYR2 181 aa7.32□□□□□ -1.24
CNOT3-201ENST00000221232 ABCA13Q86UQ4 5058 aa7.31□□□□□ -1.24
CNOT3-201ENST00000221232 NDUFAF8A1L188 74 aa7.29□□□□□ -1.24
CNOT3-201ENST00000221232 TPRXLQ17RH7 258 aa7.2□□□□□ -1.26
CNOT3-201ENST00000221232 SPINT4Q6UDR6 99 aa7.18□□□□□ -1.26
CNOT3-201ENST00000221232 KRTAP12-2P59991 146 aa7.15□□□□□ -1.26
CNOT3-201ENST00000221232 C10orf95Q9H7T3 257 aa7.11□□□□□ -1.27
CNOT3-201ENST00000221232 KRTAP12-1P59990 96 aa7.05□□□□□ -1.28
CNOT3-201ENST00000221232 J3QL48 77 aa7.04□□□□□ -1.28
CNOT3-201ENST00000221232 KRTAP4-1Q9BYQ7 146 aa7.01□□□□□ -1.29
CNOT3-201ENST00000221232 M0QZ58 72 aa7□□□□□ -1.29
CNOT3-201ENST00000221232 SEC61BP60468 96 aaKnown RBP6.98□□□□□ -1.29
CNOT3-201ENST00000221232 MUC2Q02817 5179 aa6.97□□□□□ -1.29
CNOT3-201ENST00000221232 HERC2O95714 4834 aa6.97□□□□□ -1.29
CNOT3-201ENST00000221232 R4GN34 69 aa6.95□□□□□ -1.3
CNOT3-201ENST00000221232 LORP23490 312 aaPredicted RBP6.94□□□□□ -1.3
CNOT3-201ENST00000221232 KRTAP15-1Q3LI76 137 aa6.94□□□□□ -1.3
CNOT3-201ENST00000221232 LUZP6Q538Z0 58 aa6.94□□□□□ -1.3
CNOT3-201ENST00000221232 MUC17Q685J3 4493 aa6.93□□□□□ -1.3
CNOT3-201ENST00000221232 KRTAP19-2Q3LHN2 52 aa6.74□□□□□ -1.33
CNOT3-201ENST00000221232 HERC1Q15751 4861 aa6.73□□□□□ -1.33
CNOT3-201ENST00000221232 CAMK2N1Q7Z7J9 78 aa6.63□□□□□ -1.35
CNOT3-201ENST00000221232 BIRC6Q9NR09 4857 aa6.62□□□□□ -1.35
CNOT3-201ENST00000221232 FAT4Q6V0I7 4981 aa6.61□□□□□ -1.35
CNOT3-201ENST00000221232 PCLOQ9Y6V0 5065 aa6.59□□□□□ -1.35
CNOT3-201ENST00000221232 FLGP20930 4061 aaPredicted RBP6.55□□□□□ -1.36
CNOT3-201ENST00000221232 HMCN2Q8NDA2 5059 aa6.5□□□□□ -1.37
CNOT3-201ENST00000221232 RNF213Q63HN8 5207 aa6.47□□□□□ -1.37
CNOT3-201ENST00000221232 M0R2T5 61 aa6.43□□□□□ -1.38
CNOT3-201ENST00000221232 LCE2CQ5TA81 110 aa6.39□□□□□ -1.39
CNOT3-201ENST00000221232 PLAC4Q8WY50 150 aa6.39□□□□□ -1.39
CNOT3-201ENST00000221232 UBR4Q5T4S7 5183 aa6.36□□□□□ -1.39
CNOT3-201ENST00000221232 TNP1P09430 55 aa6.28□□□□□ -1.4
CNOT3-201ENST00000221232 MT1HP80294 61 aa6.25□□□□□ -1.41
CNOT3-201ENST00000221232 PP632Q6XCG6 107 aa6.25□□□□□ -1.41
CNOT3-201ENST00000221232 KRTAP19-1Q8IUB9 90 aa6.24□□□□□ -1.41
CNOT3-201ENST00000221232 KRTAP10-10P60014 251 aa6.23□□□□□ -1.41
CNOT3-201ENST00000221232 SPRR2GQ9BYE4 73 aa6.18□□□□□ -1.42
CNOT3-201ENST00000221232 MT1FP04733 61 aa6.17□□□□□ -1.42
CNOT3-201ENST00000221232 MT2AP02795 61 aa6.14□□□□□ -1.43
CNOT3-201ENST00000221232 KRTAP9-8Q9BYQ0 159 aa6.09□□□□□ -1.43
CNOT3-201ENST00000221232 LCE3AQ5TA76 89 aa6.02□□□□□ -1.45
CNOT3-201ENST00000221232 KRTAP23-1A1A580 65 aa5.95□□□□□ -1.46
CNOT3-201ENST00000221232 MT1BP07438 61 aa5.91□□□□□ -1.46
CNOT3-201ENST00000221232 KRTAP19-8Q3LI54 63 aa5.88□□□□□ -1.47
CNOT3-201ENST00000221232 KRTAP9-6A0A140TA67 174 aa5.88□□□□□ -1.47
CNOT3-201ENST00000221232 KRTAP10-5P60370 271 aa5.88□□□□□ -1.47
CNOT3-201ENST00000221232 MT1XP80297 61 aa5.87□□□□□ -1.47
CNOT3-201ENST00000221232 KRTAP9-3Q9BYQ3 159 aa5.82□□□□□ -1.48
CNOT3-201ENST00000221232 SPRR5A0A1B0GTR4 108 aa5.79□□□□□ -1.48
CNOT3-201ENST00000221232 USH2AO75445 5202 aa5.79□□□□□ -1.48
CNOT3-201ENST00000221232 KRTAP10-7P60409 375 aaPredicted RBP5.78□□□□□ -1.48
CNOT3-201ENST00000221232 PRO2289Q9P1D8 64 aa5.77□□□□□ -1.49
CNOT3-201ENST00000221232 KRTAP10-12P60413 245 aa5.74□□□□□ -1.49
CNOT3-201ENST00000221232 KRTAP8-1Q8IUC2 63 aa5.73□□□□□ -1.49
CNOT3-201ENST00000221232 KRTAP12-3P60328 96 aa5.69□□□□□ -1.5
CNOT3-201ENST00000221232 KMT2DO14686 5537 aa5.68□□□□□ -1.5
CNOT3-201ENST00000221232 LCE2BO14633 110 aa5.66□□□□□ -1.5
CNOT3-201ENST00000221232 KRTAP9-2Q9BYQ4 174 aa5.55□□□□□ -1.52
CNOT3-201ENST00000221232 KRTAP19-5Q3LI72 72 aa5.52□□□□□ -1.53
CNOT3-201ENST00000221232 KRTAP4-8A0A0G2JLE6 195 aa5.51□□□□□ -1.53
CNOT3-201ENST00000221232 KRTAP4-8Q9BYQ9 185 aa5.51□□□□□ -1.53
CNOT3-201ENST00000221232 LCE2AQ5TA79 106 aaPredicted RBP5.47□□□□□ -1.53
CNOT3-201ENST00000221232 FSIP2Q5CZC0 6907 aa5.41□□□□□ -1.54
CNOT3-201ENST00000221232 INE1O15225 51 aa5.35□□□□□ -1.55
CNOT3-201ENST00000221232 LCE3CQ5T5A8 94 aa5.33□□□□□ -1.56
CNOT3-201ENST00000221232 KRTAP4-7Q9BYR0 210 aa5.29□□□□□ -1.56
CNOT3-201ENST00000221232 KRTAP19-7Q3SYF9 63 aa5.22□□□□□ -1.57
CNOT3-201ENST00000221232 KRTAP9-6A8MVA2 160 aa5.21□□□□□ -1.58
CNOT3-201ENST00000221232 SSPOA2VEC9 5147 aa5.2□□□□□ -1.58
CNOT3-201ENST00000221232 CRCT1Q9UGL9 99 aa5.1□□□□□ -1.59
CNOT3-201ENST00000221232 KRTAP9-7A8MTY7 169 aa5.09□□□□□ -1.59
CNOT3-201ENST00000221232 MT1EP04732 61 aa5.06□□□□□ -1.6
CNOT3-201ENST00000221232 MT1LQ93083 61 aa5.06□□□□□ -1.6
CNOT3-201ENST00000221232 LCE2DQ5TA82 110 aaPredicted RBP5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms