RNA–Protein interactions for RNA: ENST00000217402.2

CHMP4B-201, Transcript of charged multivesicular body protein 4B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP4B, Length 1,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4B-201ENST00000217402 H7BZZ5 65 aa13.1□□□□□ -0.31
CHMP4B-201ENST00000217402 KRTAP3-3Q9BYR6 98 aa13.05□□□□□ -0.32
CHMP4B-201ENST00000217402 ACYP2P14621 99 aa13.03□□□□□ -0.32
CHMP4B-201ENST00000217402 CSAG1Q6PB30 78 aa13.02□□□□□ -0.33
CHMP4B-201ENST00000217402 KRTAP9-8Q9BYQ0 159 aa12.95□□□□□ -0.34
CHMP4B-201ENST00000217402 MT2AP02795 61 aa12.88□□□□□ -0.35
CHMP4B-201ENST00000217402 CHKB-CPT1BH3BT56 60 aa12.86□□□□□ -0.35
CHMP4B-201ENST00000217402 MT1FP04733 61 aa12.79□□□□□ -0.36
CHMP4B-201ENST00000217402 COA5Q86WW8 74 aa12.77□□□□□ -0.36
CHMP4B-201ENST00000217402 KRTAP10-10P60014 251 aa12.76□□□□□ -0.37
CHMP4B-201ENST00000217402 PCP4P48539 62 aa12.73□□□□□ -0.37
CHMP4B-201ENST00000217402 TMEM258P61165 79 aa12.71□□□□□ -0.37
CHMP4B-201ENST00000217402 ATP5EP56381 51 aaPredicted RBP12.7□□□□□ -0.38
CHMP4B-201ENST00000217402 SPTSSBQ8NFR3 76 aa12.7□□□□□ -0.38
CHMP4B-201ENST00000217402 H0YAA0 97 aa12.6□□□□□ -0.39
CHMP4B-201ENST00000217402 ADM2Q7Z4H4 148 aa12.58□□□□□ -0.4
CHMP4B-201ENST00000217402 LCE2DQ5TA82 110 aaPredicted RBP12.51□□□□□ -0.41
CHMP4B-201ENST00000217402 KRTAP9-3Q9BYQ3 159 aa12.51□□□□□ -0.41
CHMP4B-201ENST00000217402 KRTAP9-2Q9BYQ4 174 aa12.45□□□□□ -0.42
CHMP4B-201ENST00000217402 P0C880 135 aa12.41□□□□□ -0.42
CHMP4B-201ENST00000217402 KRTAP3-2Q9BYR7 98 aa12.41□□□□□ -0.42
CHMP4B-201ENST00000217402 CRIPTQ9P021 101 aa12.31□□□□□ -0.44
CHMP4B-201ENST00000217402 SERP1Q9Y6X1 66 aa12.31□□□□□ -0.44
CHMP4B-201ENST00000217402 LCE2BO14633 110 aa12.29□□□□□ -0.44
CHMP4B-201ENST00000217402 KRTAP19-1Q8IUB9 90 aa12.29□□□□□ -0.44
CHMP4B-201ENST00000217402 SPRR2GQ9BYE4 73 aa12.23□□□□□ -0.45
CHMP4B-201ENST00000217402 SEC61GP60059 68 aa12.21□□□□□ -0.46
CHMP4B-201ENST00000217402 R4GN34 69 aa12.19□□□□□ -0.46
CHMP4B-201ENST00000217402 M0QZ58 72 aa12.15□□□□□ -0.47
CHMP4B-201ENST00000217402 USH2AO75445 5202 aa12.12□□□□□ -0.47
CHMP4B-201ENST00000217402 FSIP2Q5CZC0 6907 aa12.11□□□□□ -0.47
CHMP4B-201ENST00000217402 A0A1B0GU69 56 aa12.1□□□□□ -0.47
CHMP4B-201ENST00000217402 KRTAP19-8Q3LI54 63 aa12.02□□□□□ -0.49
CHMP4B-201ENST00000217402 LINC01558Q9Y6Z2 57 aa12.02□□□□□ -0.49
CHMP4B-201ENST00000217402 Q5VV11 94 aa11.98□□□□□ -0.49
CHMP4B-201ENST00000217402 LINC01554Q52M75 96 aa11.97□□□□□ -0.49
CHMP4B-201ENST00000217402 PRR15LQ9BU68 103 aa11.95□□□□□ -0.5
CHMP4B-201ENST00000217402 MT1BP07438 61 aa11.94□□□□□ -0.5
CHMP4B-201ENST00000217402 A0A1B0GU33 70 aa11.93□□□□□ -0.5
CHMP4B-201ENST00000217402 KRTAP13-4Q3LI77 160 aa11.93□□□□□ -0.5
CHMP4B-201ENST00000217402 RPS28P62857 69 aaKnown RBP11.92□□□□□ -0.5
CHMP4B-201ENST00000217402 CRCT1Q9UGL9 99 aa11.89□□□□□ -0.51
CHMP4B-201ENST00000217402 SMIM26A0A096LP01 95 aa11.87□□□□□ -0.51
CHMP4B-201ENST00000217402 SSPOA2VEC9 5147 aa11.85□□□□□ -0.51
CHMP4B-201ENST00000217402 SPATA8Q6RVD6 105 aa11.82□□□□□ -0.52
CHMP4B-201ENST00000217402 V9GYY9 64 aa11.82□□□□□ -0.52
CHMP4B-201ENST00000217402 Q1T7F1 81 aa11.8□□□□□ -0.52
CHMP4B-201ENST00000217402 KRTAP9-6A0A140TA67 174 aa11.75□□□□□ -0.53
CHMP4B-201ENST00000217402 PSPHP1O15172 72 aa11.71□□□□□ -0.53
CHMP4B-201ENST00000217402 PLAC4Q8WY50 150 aa11.71□□□□□ -0.54
CHMP4B-201ENST00000217402 A0A0D9SG42 100 aa11.69□□□□□ -0.54
CHMP4B-201ENST00000217402 KRTAP19-6Q3LI70 58 aa11.69□□□□□ -0.54
CHMP4B-201ENST00000217402 A6NN06 94 aa11.61□□□□□ -0.55
CHMP4B-201ENST00000217402 UQCR11O14957 56 aa11.58□□□□□ -0.56
CHMP4B-201ENST00000217402 A8MU10 97 aa11.56□□□□□ -0.56
CHMP4B-201ENST00000217402 KRTAP10-5P60370 271 aa11.47□□□□□ -0.57
CHMP4B-201ENST00000217402 FCGBPQ9Y6R7 5405 aaPredicted RBP11.47□□□□□ -0.57
CHMP4B-201ENST00000217402 SPINT4Q6UDR6 99 aa11.45□□□□□ -0.58
CHMP4B-201ENST00000217402 KRTAP12-1P59990 96 aa11.42□□□□□ -0.58
CHMP4B-201ENST00000217402 MIR22HGQ0VDD5 57 aa11.42□□□□□ -0.58
CHMP4B-201ENST00000217402 MT1XP80297 61 aa11.4□□□□□ -0.58
CHMP4B-201ENST00000217402 KRTAP12-2P59991 146 aa11.38□□□□□ -0.59
CHMP4B-201ENST00000217402 PRO2289Q9P1D8 64 aa11.36□□□□□ -0.59
CHMP4B-201ENST00000217402 A6NED7 52 aa11.35□□□□□ -0.59
CHMP4B-201ENST00000217402 CAMK2N1Q7Z7J9 78 aa11.35□□□□□ -0.59
CHMP4B-201ENST00000217402 SVIPQ8NHG7 77 aa11.05□□□□□ -0.64
CHMP4B-201ENST00000217402 KRTAP9-1A8MXZ3 250 aaPredicted RBP11.04□□□□□ -0.64
CHMP4B-201ENST00000217402 MACF1Q9UPN3 7388 aaKnown RBP11.02□□□□□ -0.65
CHMP4B-201ENST00000217402 K7ERS5 55 aa11.02□□□□□ -0.65
CHMP4B-201ENST00000217402 CDC42SE1Q9NRR8 79 aa10.99□□□□□ -0.65
CHMP4B-201ENST00000217402 KRTAP10-7P60409 375 aaPredicted RBP10.93□□□□□ -0.66
CHMP4B-201ENST00000217402 C10orf95Q9H7T3 257 aa10.85□□□□□ -0.67
CHMP4B-201ENST00000217402 KRTAP10-12P60413 245 aa10.8□□□□□ -0.68
CHMP4B-201ENST00000217402 SYNE2Q8WXH0 6885 aaKnown RBP10.8□□□□□ -0.68
CHMP4B-201ENST00000217402 BRK1Q8WUW1 75 aa10.72□□□□□ -0.69
CHMP4B-201ENST00000217402 KMT2DO14686 5537 aa10.71□□□□□ -0.69
CHMP4B-201ENST00000217402 KRTAP4-8A0A0G2JLE6 195 aa10.68□□□□□ -0.7
CHMP4B-201ENST00000217402 KRTAP4-8Q9BYQ9 185 aa10.68□□□□□ -0.7
CHMP4B-201ENST00000217402 KRTAP9-7A8MTY7 169 aa10.66□□□□□ -0.7
CHMP4B-201ENST00000217402 TNP1P09430 55 aa10.64□□□□□ -0.71
CHMP4B-201ENST00000217402 KRTAP8-1Q8IUC2 63 aa10.58□□□□□ -0.72
CHMP4B-201ENST00000217402 KRTAP6-3Q3LI67 103 aa10.55□□□□□ -0.72
CHMP4B-201ENST00000217402 ROMO1P60602 79 aa10.44□□□□□ -0.74
CHMP4B-201ENST00000217402 KRTAP25-1Q3LHN0 102 aa10.43□□□□□ -0.74
CHMP4B-201ENST00000217402 KRTAP5-9P26371 169 aa10.41□□□□□ -0.74
CHMP4B-201ENST00000217402 SPRR2FQ96RM1 72 aa10.37□□□□□ -0.75
CHMP4B-201ENST00000217402 LCE3AQ5TA76 89 aa10.35□□□□□ -0.75
CHMP4B-201ENST00000217402 PRO0628Q9UI54 55 aa10.29□□□□□ -0.76
CHMP4B-201ENST00000217402 MUC12Q9UKN1 5478 aa10.18□□□□□ -0.78
CHMP4B-201ENST00000217402 KRTAP19-7Q3SYF9 63 aa10.17□□□□□ -0.78
CHMP4B-201ENST00000217402 KRTAP19-5Q3LI72 72 aa10.16□□□□□ -0.78
CHMP4B-201ENST00000217402 PMAIP1Q13794 54 aa10.09□□□□□ -0.79
CHMP4B-201ENST00000217402 MDN1Q9NU22 5596 aa10.05□□□□□ -0.8
CHMP4B-201ENST00000217402 MT1EP04732 61 aa10.04□□□□□ -0.8
CHMP4B-201ENST00000217402 KRTAP23-1A1A580 65 aa10.02□□□□□ -0.81
CHMP4B-201ENST00000217402 SPRR2EP22531 72 aa10.01□□□□□ -0.81
CHMP4B-201ENST00000217402 SPRR2BP35325 72 aa10.01□□□□□ -0.81
CHMP4B-201ENST00000217402 SPRR2AP35326 72 aa10.01□□□□□ -0.81
CHMP4B-201ENST00000217402 NEBP20929 6669 aa10□□□□□ -0.81
CHMP4B-201ENST00000217402 LCE1AQ5T7P2 110 aa9.96□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms