RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 LIMD2Q9BT23 127 aa0.3□□□□□ -2.36
SMARCB1-209ENST00000635578 IMUPQ9GZP8 106 aa0.3□□□□□ -2.36
SMARCB1-209ENST00000635578 SMCO4Q9NRQ5 59 aa0.3□□□□□ -2.36
SMARCB1-209ENST00000635578 LINC00474Q9P2X8 69 aa0.3□□□□□ -2.36
SMARCB1-209ENST00000635578 NAT8Q9UHE5 227 aa0.3□□□□□ -2.36
SMARCB1-209ENST00000635578 NAT8BQ9UHF3 227 aa0.3□□□□□ -2.36
SMARCB1-209ENST00000635578 PKIGQ9Y2B9 76 aa0.3□□□□□ -2.36
SMARCB1-209ENST00000635578 SNURFQ9Y675 71 aa0.3□□□□□ -2.36
SMARCB1-209ENST00000635578 TRBV7-7A0A0K0K1E9 115 aa0.29□□□□□ -2.36
SMARCB1-209ENST00000635578 TINCRA0A1B0GVN0 87 aa0.29□□□□□ -2.36
SMARCB1-209ENST00000635578 ZNF815PA8K554 130 aa0.29□□□□□ -2.36
SMARCB1-209ENST00000635578 F8W036 122 aa0.29□□□□□ -2.36
SMARCB1-209ENST00000635578 H3BT86 120 aa0.29□□□□□ -2.36
SMARCB1-209ENST00000635578 K7ERJ3 54 aa0.29□□□□□ -2.36
SMARCB1-209ENST00000635578 PDE6DO43924 150 aa0.29□□□□□ -2.36
SMARCB1-209ENST00000635578 SPINK1P00995 79 aa0.29□□□□□ -2.36
SMARCB1-209ENST00000635578 KRTAP2-3P0C7H8 128 aa0.29□□□□□ -2.36
SMARCB1-209ENST00000635578 C3orf79P0CE67 100 aa0.29□□□□□ -2.36
SMARCB1-209ENST00000635578 LINC00313P59037 77 aa0.29□□□□□ -2.36
SMARCB1-209ENST00000635578 ELOF1P60002 83 aaKnown RBP0.29□□□□□ -2.36
SMARCB1-209ENST00000635578 CTAG1AP78358 180 aa0.29□□□□□ -2.36
SMARCB1-209ENST00000635578 MT1XP80297 61 aa0.29□□□□□ -2.36
SMARCB1-209ENST00000635578 FABP9Q0Z7S8 132 aa0.29□□□□□ -2.36
SMARCB1-209ENST00000635578 RGS21Q2M5E4 152 aa0.29□□□□□ -2.36
SMARCB1-209ENST00000635578 S100A7L2Q5SY68 101 aa0.29□□□□□ -2.36
SMARCB1-209ENST00000635578 LINC00299Q6ZSB3 139 aa0.29□□□□□ -2.36
SMARCB1-209ENST00000635578 LCA10Q71F78 164 aa0.29□□□□□ -2.36
SMARCB1-209ENST00000635578 SLC51BQ86UW2 128 aa0.29□□□□□ -2.36
SMARCB1-209ENST00000635578 COMMD7Q86VX2 200 aa0.29□□□□□ -2.36
SMARCB1-209ENST00000635578 BAGE3Q86Y29 109 aa0.29□□□□□ -2.36
SMARCB1-209ENST00000635578 KRTAP8-1Q8IUC2 63 aa0.29□□□□□ -2.36
SMARCB1-209ENST00000635578 LINC00308Q8TCZ7 52 aa0.29□□□□□ -2.36
SMARCB1-209ENST00000635578 CLEC2BQ92478 149 aa0.29□□□□□ -2.36
SMARCB1-209ENST00000635578 KRTAP2-4Q9BYR9 128 aa0.29□□□□□ -2.36
SMARCB1-209ENST00000635578 NXT2Q9NPJ8 142 aaKnown RBP0.29□□□□□ -2.36
SMARCB1-209ENST00000635578 SPANXB1Q9NS25 103 aaPredicted RBP0.29□□□□□ -2.36
SMARCB1-209ENST00000635578 MUC16Q8WXI7 14507 aa0.29□□□□□ -2.36
SMARCB1-209ENST00000635578 MUC5BQ9HC84 5762 aaPredicted RBP0.29□□□□□ -2.36
SMARCB1-209ENST00000635578 SYNE1Q8NF91 8797 aaKnown RBP0.29□□□□□ -2.36
SMARCB1-209ENST00000635578 IGLV5-48A0A075B6I7 105 aa0.28□□□□□ -2.36
SMARCB1-209ENST00000635578 PIGBOS1A0A0B4J2F0 54 aa0.28□□□□□ -2.36
SMARCB1-209ENST00000635578 LOC107984156A0A0G2JMH3 177 aa0.28□□□□□ -2.36
SMARCB1-209ENST00000635578 MMP24-AS1A0A0U1RRL7 71 aa0.28□□□□□ -2.36
SMARCB1-209ENST00000635578 F8WEM9 126 aa0.28□□□□□ -2.36
SMARCB1-209ENST00000635578 H3BRM9 83 aa0.28□□□□□ -2.36
SMARCB1-209ENST00000635578 LEPROTO15243 131 aa0.28□□□□□ -2.36
SMARCB1-209ENST00000635578 TIMM17BO60830 172 aa0.28□□□□□ -2.36
SMARCB1-209ENST00000635578 SPRR1BP22528 89 aa0.28□□□□□ -2.36
SMARCB1-209ENST00000635578 G0S2P27469 103 aa0.28□□□□□ -2.36
SMARCB1-209ENST00000635578 RPS29P62273 56 aaKnown RBP0.28□□□□□ -2.36
SMARCB1-209ENST00000635578 HIST1H4AP62805 103 aaKnown RBP0.28□□□□□ -2.36
SMARCB1-209ENST00000635578 IFITM2Q01629 132 aa0.28□□□□□ -2.36
SMARCB1-209ENST00000635578 C4orf26Q17RF5 130 aa0.28□□□□□ -2.36
SMARCB1-209ENST00000635578 KRTAP19-8Q3LI54 63 aa0.28□□□□□ -2.36
SMARCB1-209ENST00000635578 Q5VV11 94 aa0.28□□□□□ -2.36
SMARCB1-209ENST00000635578 ARL17AQ8IVW1 177 aa0.28□□□□□ -2.36
SMARCB1-209ENST00000635578 TCTE3Q8IZS6 198 aa0.28□□□□□ -2.36
SMARCB1-209ENST00000635578 SMIM11BQ8TCY0 68 aa0.28□□□□□ -2.36
SMARCB1-209ENST00000635578 IFI27L1Q96BM0 104 aa0.28□□□□□ -2.36
SMARCB1-209ENST00000635578 C20orf78Q9BR46 151 aa0.28□□□□□ -2.36
SMARCB1-209ENST00000635578 TCEAL7Q9BRU2 100 aa0.28□□□□□ -2.36
SMARCB1-209ENST00000635578 SEC11CQ9BY50 192 aa0.28□□□□□ -2.36
SMARCB1-209ENST00000635578 PRO1933Q9H354 126 aa0.28□□□□□ -2.36
SMARCB1-209ENST00000635578 KCNQ1DNQ9H478 68 aa0.28□□□□□ -2.36
SMARCB1-209ENST00000635578 LINC00472Q9H8W2 130 aa0.28□□□□□ -2.36
SMARCB1-209ENST00000635578 NHP2Q9NX24 153 aaKnown RBP0.28□□□□□ -2.36
SMARCB1-209ENST00000635578 LAMTOR3Q9UHA4 124 aa0.28□□□□□ -2.36
SMARCB1-209ENST00000635578 MUC5ACP98088 5654 aa0.27□□□□□ -2.37
SMARCB1-209ENST00000635578 TRBV20-1A0A075B6N2 111 aa0.27□□□□□ -2.37
SMARCB1-209ENST00000635578 TRAV9-1A0A075B6T8 112 aa0.27□□□□□ -2.37
SMARCB1-209ENST00000635578 TRAV7A0A075B6U4 112 aa0.27□□□□□ -2.37
SMARCB1-209ENST00000635578 TRAV13-2A0A0B4J235 113 aa0.27□□□□□ -2.37
SMARCB1-209ENST00000635578 TRAV12-1A0A0B4J245 112 aa0.27□□□□□ -2.37
SMARCB1-209ENST00000635578 TRBV10-2A0A0K0K1G8 114 aa0.27□□□□□ -2.37
SMARCB1-209ENST00000635578 MYMXA0A1B0GTQ4 84 aa0.27□□□□□ -2.37
SMARCB1-209ENST00000635578 K7EQZ3 153 aa0.27□□□□□ -2.37
SMARCB1-209ENST00000635578 LST1O00453 97 aa0.27□□□□□ -2.37
SMARCB1-209ENST00000635578 DPM2O94777 84 aa0.27□□□□□ -2.37
SMARCB1-209ENST00000635578 LEPROTL1O95214 131 aa0.27□□□□□ -2.37
SMARCB1-209ENST00000635578 IGKCP01834 107 aa0.27□□□□□ -2.37
SMARCB1-209ENST00000635578 APOC3P02656 99 aa0.27□□□□□ -2.37
SMARCB1-209ENST00000635578 TRGC2P03986 189 aa0.27□□□□□ -2.37
SMARCB1-209ENST00000635578 S100A8P05109 93 aa0.27□□□□□ -2.37
SMARCB1-209ENST00000635578 FXYD2P54710 66 aa0.27□□□□□ -2.37
SMARCB1-209ENST00000635578 SPINK7P58062 85 aa0.27□□□□□ -2.37
SMARCB1-209ENST00000635578 KRTDAPP60985 99 aa0.27□□□□□ -2.37
SMARCB1-209ENST00000635578 KLKP1Q107X0 134 aa0.27□□□□□ -2.37
SMARCB1-209ENST00000635578 JOSD1Q15040 202 aaPredicted RBP0.27□□□□□ -2.37
SMARCB1-209ENST00000635578 NDUFA5Q16718 116 aa0.27□□□□□ -2.37
SMARCB1-209ENST00000635578 LINC01554Q52M75 96 aa0.27□□□□□ -2.37
SMARCB1-209ENST00000635578 SPAG11AQ6PDA7 123 aa0.27□□□□□ -2.37
SMARCB1-209ENST00000635578 TEX261Q6UWH6 196 aa0.27□□□□□ -2.37
SMARCB1-209ENST00000635578 ATP11AUNQ6ZP68 121 aa0.27□□□□□ -2.37
SMARCB1-209ENST00000635578 MUSTN1Q8IVN3 82 aa0.27□□□□□ -2.37
SMARCB1-209ENST00000635578 SPANXDQ9BXN6 97 aa0.27□□□□□ -2.37
SMARCB1-209ENST00000635578 KRTAP2-1Q9BYU5 128 aa0.27□□□□□ -2.37
SMARCB1-209ENST00000635578 CYSTM1Q9H1C7 97 aa0.27□□□□□ -2.37
SMARCB1-209ENST00000635578 BIN3Q9NQY0 253 aa0.27□□□□□ -2.37
SMARCB1-209ENST00000635578 SPANXCQ9NY87 97 aa0.27□□□□□ -2.37
SMARCB1-209ENST00000635578 HSPB8Q9UJY1 196 aa0.27□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 130.2 ms