RNA–Protein interactions for RNA: ENST00000621870.4

GGA3-223, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 1 (best)

Gene GGA3, Length 4,034 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-223ENST00000621870 LINC01554Q52M75 96 aa5.6□□□□□ -1.51
GGA3-223ENST00000621870 M0R2T5 61 aa5.59□□□□□ -1.51
GGA3-223ENST00000621870 KRTAP21-3Q3LHN1 58 aa5.59□□□□□ -1.51
GGA3-223ENST00000621870 A8MUN3 132 aa5.59□□□□□ -1.51
GGA3-223ENST00000621870 KTN1-AS1Q86SY8 53 aa5.58□□□□□ -1.52
GGA3-223ENST00000621870 AKAP9Q99996 3911 aa5.57□□□□□ -1.52
GGA3-223ENST00000621870 SPRR1BP22528 89 aa5.57□□□□□ -1.52
GGA3-223ENST00000621870 TRRAPQ9Y4A5 3859 aa5.56□□□□□ -1.52
GGA3-223ENST00000621870 FP248Q71RG6 208 aaPredicted RBP5.55□□□□□ -1.52
GGA3-223ENST00000621870 ZNF469Q96JG9 3925 aaPredicted RBP5.54□□□□□ -1.52
GGA3-223ENST00000621870 UQCR11O14957 56 aa5.53□□□□□ -1.52
GGA3-223ENST00000621870 Q6ZRN7 208 aaPredicted RBP5.53□□□□□ -1.52
GGA3-223ENST00000621870 OCR1Q9BZK8 76 aa5.52□□□□□ -1.53
GGA3-223ENST00000621870 MMP24-AS1A0A0U1RRL7 71 aa5.51□□□□□ -1.53
GGA3-223ENST00000621870 A0A087X002 238 aa5.51□□□□□ -1.53
GGA3-223ENST00000621870 LCA10Q71F78 164 aa5.51□□□□□ -1.53
GGA3-223ENST00000621870 LINC00472Q9H8W2 130 aa5.5□□□□□ -1.53
GGA3-223ENST00000621870 A0A0D9SG42 100 aa5.5□□□□□ -1.53
GGA3-223ENST00000621870 Q8N9P0 234 aaPredicted RBP5.5□□□□□ -1.53
GGA3-223ENST00000621870 ZCCHC13Q8WW36 166 aaKnown RBP5.49□□□□□ -1.53
GGA3-223ENST00000621870 HRES1P13985 223 aa5.48□□□□□ -1.53
GGA3-223ENST00000621870 SPINK7P58062 85 aa5.48□□□□□ -1.53
GGA3-223ENST00000621870 SEC61BP60468 96 aaKnown RBP5.48□□□□□ -1.53
GGA3-223ENST00000621870 KRTAP4-16G5E9R7 235 aaPredicted RBP5.47□□□□□ -1.53
GGA3-223ENST00000621870 SPINT4Q6UDR6 99 aa5.47□□□□□ -1.53
GGA3-223ENST00000621870 KRTAP11-1Q8IUC1 163 aa5.47□□□□□ -1.53
GGA3-223ENST00000621870 MIR22HGQ0VDD5 57 aa5.45□□□□□ -1.54
GGA3-223ENST00000621870 SPANXA2-OT1Q8N9U9 137 aa5.44□□□□□ -1.54
GGA3-223ENST00000621870 LINC00483Q53H64 154 aa5.42□□□□□ -1.54
GGA3-223ENST00000621870 CYP4F30PQ9H0H9 118 aa5.42□□□□□ -1.54
GGA3-223ENST00000621870 Q5W150 140 aa5.42□□□□□ -1.54
GGA3-223ENST00000621870 CSAG1Q6PB30 78 aa5.41□□□□□ -1.54
GGA3-223ENST00000621870 Q1T7F1 81 aa5.41□□□□□ -1.54
GGA3-223ENST00000621870 KRTAP7-1Q8IUC3 87 aa5.39□□□□□ -1.55
GGA3-223ENST00000621870 A0A0A0MQY5 61 aa5.38□□□□□ -1.55
GGA3-223ENST00000621870 CAMK2N1Q7Z7J9 78 aa5.38□□□□□ -1.55
GGA3-223ENST00000621870 PRAC1Q96KF2 57 aa5.36□□□□□ -1.55
GGA3-223ENST00000621870 CRIPTQ9P021 101 aa5.36□□□□□ -1.55
GGA3-223ENST00000621870 ANK3Q12955 4377 aaKnown RBP5.36□□□□□ -1.55
GGA3-223ENST00000621870 S4R3F8 94 aa5.34□□□□□ -1.55
GGA3-223ENST00000621870 A0A1B0GU33 70 aa5.33□□□□□ -1.56
GGA3-223ENST00000621870 NOTCH2NLQ7Z3S9 236 aa5.33□□□□□ -1.56
GGA3-223ENST00000621870 KRTAP13-2Q52LG2 175 aa5.32□□□□□ -1.56
GGA3-223ENST00000621870 FBN3Q75N90 2809 aa5.32□□□□□ -1.56
GGA3-223ENST00000621870 R4GN34 69 aa5.31□□□□□ -1.56
GGA3-223ENST00000621870 COL7A1Q02388 2944 aa5.3□□□□□ -1.56
GGA3-223ENST00000621870 CDC42SE1Q9NRR8 79 aa5.29□□□□□ -1.56
GGA3-223ENST00000621870 Q5VV11 94 aa5.28□□□□□ -1.56
GGA3-223ENST00000621870 KRTAP13-1Q8IUC0 172 aa5.27□□□□□ -1.57
GGA3-223ENST00000621870 KRTAP29-1A8MX34 341 aaPredicted RBP5.24□□□□□ -1.57
GGA3-223ENST00000621870 Q75L30 129 aa5.23□□□□□ -1.57
GGA3-223ENST00000621870 A8MU10 97 aa5.21□□□□□ -1.58
GGA3-223ENST00000621870 RPS29P62273 56 aaKnown RBP5.21□□□□□ -1.58
GGA3-223ENST00000621870 ASB16-AS1Q495Z4 193 aa5.21□□□□□ -1.58
GGA3-223ENST00000621870 M0QZ58 72 aa5.19□□□□□ -1.58
GGA3-223ENST00000621870 LINC01558Q9Y6Z2 57 aa5.18□□□□□ -1.58
GGA3-223ENST00000621870 DMAC1Q96GE9 116 aa5.18□□□□□ -1.58
GGA3-223ENST00000621870 MEGF8Q7Z7M0 2845 aa5.18□□□□□ -1.58
GGA3-223ENST00000621870 DNHD1Q96M86 4753 aa5.13□□□□□ -1.59
GGA3-223ENST00000621870 ADM2Q7Z4H4 148 aa5.13□□□□□ -1.59
GGA3-223ENST00000621870 KRTAP1-4P0C5Y4 121 aa5.12□□□□□ -1.59
GGA3-223ENST00000621870 RPL37P61927 97 aaKnown RBP5.12□□□□□ -1.59
GGA3-223ENST00000621870 H1FX-AS1Q4G0G2 97 aa5.12□□□□□ -1.59
GGA3-223ENST00000621870 C20orf166-AS1Q96NR2 134 aa5.11□□□□□ -1.59
GGA3-223ENST00000621870 A6NN06 94 aa5.09□□□□□ -1.59
GGA3-223ENST00000621870 SPATA8Q6RVD6 105 aa5.07□□□□□ -1.6
GGA3-223ENST00000621870 PLAC4Q8WY50 150 aa5.05□□□□□ -1.6
GGA3-223ENST00000621870 CSMD3Q7Z407 3707 aa5.05□□□□□ -1.6
GGA3-223ENST00000621870 A8MUU9 505 aa5.03□□□□□ -1.6
GGA3-223ENST00000621870 XP32Q5T750 250 aa5.01□□□□□ -1.61
GGA3-223ENST00000621870 LUZP6Q538Z0 58 aa5□□□□□ -1.61
GGA3-223ENST00000621870 KRTAP16-1A8MUX0 517 aa4.99□□□□□ -1.61
GGA3-223ENST00000621870 A0A1B0GVY2 172 aa4.96□□□□□ -1.61
GGA3-223ENST00000621870 TPRXLQ17RH7 258 aa4.94□□□□□ -1.62
GGA3-223ENST00000621870 ANK2Q01484 3957 aa4.93□□□□□ -1.62
GGA3-223ENST00000621870 ROMO1P60602 79 aa4.91□□□□□ -1.62
GGA3-223ENST00000621870 KRTAP10-8P60410 259 aa4.89□□□□□ -1.63
GGA3-223ENST00000621870 NDUFAF8A1L188 74 aa4.88□□□□□ -1.63
GGA3-223ENST00000621870 KRTAP13-3Q3SY46 172 aa4.88□□□□□ -1.63
GGA3-223ENST00000621870 PRKDCP78527 4128 aaKnown RBP4.83□□□□□ -1.64
GGA3-223ENST00000621870 HUWE1Q7Z6Z7 4374 aaKnown RBP4.83□□□□□ -1.64
GGA3-223ENST00000621870 LYSTQ99698 3801 aa4.81□□□□□ -1.64
GGA3-223ENST00000621870 KRTAP10-10P60014 251 aa4.81□□□□□ -1.64
GGA3-223ENST00000621870 KRTAP25-1Q3LHN0 102 aa4.78□□□□□ -1.64
GGA3-223ENST00000621870 DNAH9Q9NYC9 4486 aa4.77□□□□□ -1.65
GGA3-223ENST00000621870 CMYA5Q8N3K9 4069 aa4.77□□□□□ -1.65
GGA3-223ENST00000621870 TNP1P09430 55 aa4.73□□□□□ -1.65
GGA3-223ENST00000621870 DNAH1Q9P2D7 4330 aa4.71□□□□□ -1.66
GGA3-223ENST00000621870 PLECQ15149 4684 aaKnown RBP4.69□□□□□ -1.66
GGA3-223ENST00000621870 P0C880 135 aa4.68□□□□□ -1.66
GGA3-223ENST00000621870 DNAH10Q8IVF4 4471 aa4.66□□□□□ -1.66
GGA3-223ENST00000621870 DNAH7Q8WXX0 4024 aa4.65□□□□□ -1.67
GGA3-223ENST00000621870 STARD9Q9P2P6 4700 aa4.64□□□□□ -1.67
GGA3-223ENST00000621870 DNAH3Q8TD57 4116 aa4.61□□□□□ -1.67
GGA3-223ENST00000621870 KRTAP4-5Q9BYR2 181 aa4.61□□□□□ -1.67
GGA3-223ENST00000621870 H0YAA0 97 aa4.6□□□□□ -1.67
GGA3-223ENST00000621870 MT1HL1P0DM35 61 aa4.59□□□□□ -1.67
GGA3-223ENST00000621870 DNAH11Q96DT5 4516 aa4.57□□□□□ -1.68
GGA3-223ENST00000621870 PRO2289Q9P1D8 64 aa4.56□□□□□ -1.68
GGA3-223ENST00000621870 KMT2AQ03164 3969 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms