RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 ITPR1Q14643 2758 aa6.06□□□□□ -1.44
CLIP1-219ENST00000620786 MAP1AP78559 2803 aaPredicted RBP6.06□□□□□ -1.44
CLIP1-219ENST00000620786 STAB2Q8WWQ8 2551 aa6.05□□□□□ -1.44
CLIP1-219ENST00000620786 KRTAP10-10P60014 251 aa6.03□□□□□ -1.44
CLIP1-219ENST00000620786 SPTBN5Q9NRC6 3674 aaKnown RBP6.02□□□□□ -1.45
CLIP1-219ENST00000620786 HIVEP1P15822 2718 aa6.02□□□□□ -1.45
CLIP1-219ENST00000620786 MUC3AQ02505 3323 aa6.02□□□□□ -1.45
CLIP1-219ENST00000620786 CELSR3Q9NYQ7 3312 aa6.01□□□□□ -1.45
CLIP1-219ENST00000620786 LAMA1P25391 3075 aa6□□□□□ -1.45
CLIP1-219ENST00000620786 FRYLO94915 3013 aa6□□□□□ -1.45
CLIP1-219ENST00000620786 KRTAP16-1A8MUX0 517 aa6□□□□□ -1.45
CLIP1-219ENST00000620786 UTP20O75691 2785 aaKnown RBP6□□□□□ -1.45
CLIP1-219ENST00000620786 A6NN06 94 aa6□□□□□ -1.45
CLIP1-219ENST00000620786 C10orf95Q9H7T3 257 aa6□□□□□ -1.45
CLIP1-219ENST00000620786 CRYBG3Q68DQ2 2970 aa5.99□□□□□ -1.45
CLIP1-219ENST00000620786 ATMQ13315 3056 aa5.96□□□□□ -1.45
CLIP1-219ENST00000620786 KRTAP13-3Q3SY46 172 aa5.94□□□□□ -1.46
CLIP1-219ENST00000620786 LRBAP50851 2863 aa5.94□□□□□ -1.46
CLIP1-219ENST00000620786 TACC2O95359 2948 aa5.93□□□□□ -1.46
CLIP1-219ENST00000620786 COL12A1Q99715 3063 aa5.93□□□□□ -1.46
CLIP1-219ENST00000620786 KALRNO60229 2985 aa5.92□□□□□ -1.46
CLIP1-219ENST00000620786 PRO2289Q9P1D8 64 aa5.92□□□□□ -1.46
CLIP1-219ENST00000620786 FLNCQ14315 2725 aa5.9□□□□□ -1.47
CLIP1-219ENST00000620786 TENM4Q6N022 2769 aa5.89□□□□□ -1.47
CLIP1-219ENST00000620786 APCP25054 2843 aa5.89□□□□□ -1.47
CLIP1-219ENST00000620786 TNRC18O15417 2968 aaPredicted RBP5.88□□□□□ -1.47
CLIP1-219ENST00000620786 PP632Q6XCG6 107 aa5.87□□□□□ -1.47
CLIP1-219ENST00000620786 DMXL2Q8TDJ6 3036 aa5.85□□□□□ -1.47
CLIP1-219ENST00000620786 NDUFAF8A1L188 74 aa5.84□□□□□ -1.47
CLIP1-219ENST00000620786 DMDP11532 3685 aa5.83□□□□□ -1.48
CLIP1-219ENST00000620786 BOD1L1Q8NFC6 3051 aa5.82□□□□□ -1.48
CLIP1-219ENST00000620786 FREM2Q5SZK8 3169 aa5.81□□□□□ -1.48
CLIP1-219ENST00000620786 ADGRG4Q8IZF6 3080 aa5.78□□□□□ -1.48
CLIP1-219ENST00000620786 H0YAA0 97 aa5.77□□□□□ -1.49
CLIP1-219ENST00000620786 CFAP47Q6ZTR5 3102 aa5.76□□□□□ -1.49
CLIP1-219ENST00000620786 ASPMQ8IZT6 3477 aa5.76□□□□□ -1.49
CLIP1-219ENST00000620786 NBEAQ8NFP9 2946 aa5.75□□□□□ -1.49
CLIP1-219ENST00000620786 P0C880 135 aa5.75□□□□□ -1.49
CLIP1-219ENST00000620786 WDFY3Q8IZQ1 3526 aa5.74□□□□□ -1.49
CLIP1-219ENST00000620786 ASH1LQ9NR48 2969 aaKnown RBP5.71□□□□□ -1.49
CLIP1-219ENST00000620786 LOC400499M0QZD8 3231 aa5.71□□□□□ -1.49
CLIP1-219ENST00000620786 NIPBLQ6KC79 2804 aaeCLIP5.71□□□□□ -1.51e-6■□□□□ 9
CLIP1-219ENST00000620786 ZZEF1O43149 2961 aa5.7□□□□□ -1.5
CLIP1-219ENST00000620786 CELSR2Q9HCU4 2923 aa5.68□□□□□ -1.5
CLIP1-219ENST00000620786 TENM2Q9NT68 2774 aa5.66□□□□□ -1.5
CLIP1-219ENST00000620786 DMXL1Q9Y485 3027 aa5.65□□□□□ -1.51
CLIP1-219ENST00000620786 DCHS2Q6V1P9 2916 aa5.65□□□□□ -1.51
CLIP1-219ENST00000620786 HRNRQ86YZ3 2850 aaPredicted RBP5.63□□□□□ -1.51
CLIP1-219ENST00000620786 LAMA5O15230 3695 aa5.62□□□□□ -1.51
CLIP1-219ENST00000620786 DCHS1Q96JQ0 3298 aa5.61□□□□□ -1.51
CLIP1-219ENST00000620786 TENM1Q9UKZ4 2725 aa5.56□□□□□ -1.52
CLIP1-219ENST00000620786 ZANQ9Y493 2812 aa5.55□□□□□ -1.52
CLIP1-219ENST00000620786 NF1P21359 2839 aa5.55□□□□□ -1.52
CLIP1-219ENST00000620786 ZFHX4Q86UP3 3567 aa5.54□□□□□ -1.52
CLIP1-219ENST00000620786 KRTAP12-2P59991 146 aa5.52□□□□□ -1.53
CLIP1-219ENST00000620786 CELSR1Q9NYQ6 3014 aa5.47□□□□□ -1.53
CLIP1-219ENST00000620786 TENM3Q9P273 2699 aa5.46□□□□□ -1.54
CLIP1-219ENST00000620786 FBN2P35556 2912 aa5.45□□□□□ -1.54
CLIP1-219ENST00000620786 KRTAP13-4Q3LI77 160 aa5.44□□□□□ -1.54
CLIP1-219ENST00000620786 NBPF19A0A087WUL8 3843 aa5.42□□□□□ -1.54
CLIP1-219ENST00000620786 RELNP78509 3460 aa5.4□□□□□ -1.54
CLIP1-219ENST00000620786 MXRA5Q9NR99 2828 aa5.39□□□□□ -1.55
CLIP1-219ENST00000620786 KRTAP12-1P59990 96 aa5.38□□□□□ -1.55
CLIP1-219ENST00000620786 PDZD2O15018 2839 aa5.37□□□□□ -1.55
CLIP1-219ENST00000620786 TGP01266 2768 aa5.37□□□□□ -1.55
CLIP1-219ENST00000620786 KRTAP3-1Q9BYR8 98 aa5.36□□□□□ -1.55
CLIP1-219ENST00000620786 ANK3Q12955 4377 aaKnown RBP5.35□□□□□ -1.55
CLIP1-219ENST00000620786 SMG1Q96Q15 3661 aaKnown RBP5.34□□□□□ -1.56
CLIP1-219ENST00000620786 KRTAP15-1Q3LI76 137 aa5.32□□□□□ -1.56
CLIP1-219ENST00000620786 MT1HL1P0DM35 61 aa5.32□□□□□ -1.56
CLIP1-219ENST00000620786 PKD1L1Q8TDX9 2849 aa5.29□□□□□ -1.56
CLIP1-219ENST00000620786 KRTAP4-5Q9BYR2 181 aa5.26□□□□□ -1.57
CLIP1-219ENST00000620786 SPENQ96T58 3664 aaKnown RBP5.24□□□□□ -1.57
CLIP1-219ENST00000620786 VWFP04275 2813 aa5.23□□□□□ -1.57
CLIP1-219ENST00000620786 OTOGQ6ZRI0 2925 aa5.18□□□□□ -1.58
CLIP1-219ENST00000620786 KRTAP10-6P60371 365 aaPredicted RBP5.17□□□□□ -1.58
CLIP1-219ENST00000620786 ALMS1Q8TCU4 4167 aa5.17□□□□□ -1.58
CLIP1-219ENST00000620786 SVEP1Q4LDE5 3571 aa5.17□□□□□ -1.58
CLIP1-219ENST00000620786 CRCT1Q9UGL9 99 aa5.14□□□□□ -1.59
CLIP1-219ENST00000620786 FBN1P35555 2871 aaKnown RBP5.13□□□□□ -1.59
CLIP1-219ENST00000620786 KRTAP10-12P60413 245 aa5.12□□□□□ -1.59
CLIP1-219ENST00000620786 KRTAP10-4P60372 401 aaPredicted RBP5.11□□□□□ -1.59
CLIP1-219ENST00000620786 HUWE1Q7Z6Z7 4374 aaKnown RBP5.11□□□□□ -1.59
CLIP1-219ENST00000620786 CUBNO60494 3623 aa5.1□□□□□ -1.59
CLIP1-219ENST00000620786 ZFHX3Q15911 3703 aa5.1□□□□□ -1.59
CLIP1-219ENST00000620786 CSMD1Q96PZ7 3565 aa5.1□□□□□ -1.59
CLIP1-219ENST00000620786 BSNQ9UPA5 3926 aa5.08□□□□□ -1.6
CLIP1-219ENST00000620786 CSMD2Q7Z408 3487 aa5.08□□□□□ -1.6
CLIP1-219ENST00000620786 KRTAP3-3Q9BYR6 98 aa5.02□□□□□ -1.61
CLIP1-219ENST00000620786 KRTAP3-2Q9BYR7 98 aa4.98□□□□□ -1.61
CLIP1-219ENST00000620786 VPS13CQ709C8 3753 aa4.94□□□□□ -1.62
CLIP1-219ENST00000620786 TRRAPQ9Y4A5 3859 aa4.93□□□□□ -1.62
CLIP1-219ENST00000620786 FBN3Q75N90 2809 aa4.93□□□□□ -1.62
CLIP1-219ENST00000620786 KRTAP12-3P60328 96 aa4.91□□□□□ -1.62
CLIP1-219ENST00000620786 MEGF8Q7Z7M0 2845 aa4.88□□□□□ -1.63
CLIP1-219ENST00000620786 LCE3AQ5TA76 89 aa4.87□□□□□ -1.63
CLIP1-219ENST00000620786 KRTAP8-1Q8IUC2 63 aa4.85□□□□□ -1.63
CLIP1-219ENST00000620786 LORP23490 312 aaPredicted RBP4.82□□□□□ -1.64
CLIP1-219ENST00000620786 SRRM2Q9UQ35 2752 aaKnown RBP4.82□□□□□ -1.64
CLIP1-219ENST00000620786 DNAH9Q9NYC9 4486 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 143.7 ms