RNA–Protein interactions for RNA: ENST00000611712.4

LIG4-204, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 4 BASIC

Gene LIG4, Length 4,180 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-204ENST00000611712 Q6ZR54 194 aa5.17□□□□□ -1.58
LIG4-204ENST00000611712 TENM2Q9NT68 2774 aa5.16□□□□□ -1.58
LIG4-204ENST00000611712 Q5VV11 94 aa5.16□□□□□ -1.58
LIG4-204ENST00000611712 A0A087X002 238 aa5.15□□□□□ -1.58
LIG4-204ENST00000611712 NOTCH2NLQ7Z3S9 236 aa5.15□□□□□ -1.58
LIG4-204ENST00000611712 ATP11AUNQ6ZP68 121 aa5.15□□□□□ -1.59
LIG4-204ENST00000611712 HRES1P13985 223 aa5.15□□□□□ -1.59
LIG4-204ENST00000611712 SMR3BP02814 79 aaPredicted RBP5.14□□□□□ -1.59
LIG4-204ENST00000611712 KRTAP10-2P60368 255 aa5.14□□□□□ -1.59
LIG4-204ENST00000611712 LINC00304Q8N9R0 145 aa5.13□□□□□ -1.59
LIG4-204ENST00000611712 Q75L30 129 aa5.12□□□□□ -1.59
LIG4-204ENST00000611712 CDC42SE1Q9NRR8 79 aa5.11□□□□□ -1.59
LIG4-204ENST00000611712 LINC01558Q9Y6Z2 57 aa5.11□□□□□ -1.59
LIG4-204ENST00000611712 AKAP9Q99996 3911 aa5.11□□□□□ -1.59
LIG4-204ENST00000611712 KRTAP10-1P60331 282 aa5.1□□□□□ -1.59
LIG4-204ENST00000611712 Q5W150 140 aa5.1□□□□□ -1.59
LIG4-204ENST00000611712 C9orf92A6NGG3 77 aa5.09□□□□□ -1.59
LIG4-204ENST00000611712 TGP01266 2768 aa5.08□□□□□ -1.6
LIG4-204ENST00000611712 UQCR11O14957 56 aa5.08□□□□□ -1.6
LIG4-204ENST00000611712 K7ERS5 55 aa5.08□□□□□ -1.6
LIG4-204ENST00000611712 Q8N1X5 172 aa5.07□□□□□ -1.6
LIG4-204ENST00000611712 KTN1-AS1Q86SY8 53 aa5.06□□□□□ -1.6
LIG4-204ENST00000611712 MIR22HGQ0VDD5 57 aa5.05□□□□□ -1.6
LIG4-204ENST00000611712 SRRM2Q9UQ35 2752 aaKnown RBP5.05□□□□□ -1.6
LIG4-204ENST00000611712 SPINK7P58062 85 aa5.05□□□□□ -1.6
LIG4-204ENST00000611712 DMAC1Q96GE9 116 aa5.01□□□□□ -1.61
LIG4-204ENST00000611712 A8MU10 97 aa5.01□□□□□ -1.61
LIG4-204ENST00000611712 LCA10Q71F78 164 aa5.01□□□□□ -1.61
LIG4-204ENST00000611712 ASB16-AS1Q495Z4 193 aa5□□□□□ -1.61
LIG4-204ENST00000611712 KRTAP13-2Q52LG2 175 aa5□□□□□ -1.61
LIG4-204ENST00000611712 DMBT1Q9UGM3 2413 aaPredicted RBP4.94□□□□□ -1.62
LIG4-204ENST00000611712 RBM12B-AS1Q9P1G2 102 aa4.92□□□□□ -1.62
LIG4-204ENST00000611712 FBN3Q75N90 2809 aa4.9□□□□□ -1.62
LIG4-204ENST00000611712 Q6ZSA8 131 aa4.89□□□□□ -1.63
LIG4-204ENST00000611712 PRAC1Q96KF2 57 aa4.89□□□□□ -1.63
LIG4-204ENST00000611712 KRTAP1-4P0C5Y4 121 aa4.87□□□□□ -1.63
LIG4-204ENST00000611712 A0A1B0GU33 70 aa4.87□□□□□ -1.63
LIG4-204ENST00000611712 MEGF8Q7Z7M0 2845 aa4.87□□□□□ -1.63
LIG4-204ENST00000611712 COL7A1Q02388 2944 aa4.86□□□□□ -1.63
LIG4-204ENST00000611712 A6NN06 94 aa4.86□□□□□ -1.63
LIG4-204ENST00000611712 CSMD3Q7Z407 3707 aa4.83□□□□□ -1.64
LIG4-204ENST00000611712 HUWE1Q7Z6Z7 4374 aaKnown RBP4.83□□□□□ -1.64
LIG4-204ENST00000611712 SPATA8Q6RVD6 105 aa4.83□□□□□ -1.64
LIG4-204ENST00000611712 RPS29P62273 56 aaKnown RBP4.82□□□□□ -1.64
LIG4-204ENST00000611712 FLG2Q5D862 2391 aaPredicted RBP4.81□□□□□ -1.64
LIG4-204ENST00000611712 KRTAP13-3Q3SY46 172 aa4.81□□□□□ -1.64
LIG4-204ENST00000611712 KRTAP16-1A8MUX0 517 aa4.8□□□□□ -1.64
LIG4-204ENST00000611712 A0A0D9SG42 100 aa4.8□□□□□ -1.64
LIG4-204ENST00000611712 CSAG1Q6PB30 78 aa4.76□□□□□ -1.65
LIG4-204ENST00000611712 COX6B2Q6YFQ2 88 aa4.76□□□□□ -1.65
LIG4-204ENST00000611712 Q5VSD8 79 aa4.76□□□□□ -1.65
LIG4-204ENST00000611712 LINC01554Q52M75 96 aa4.75□□□□□ -1.65
LIG4-204ENST00000611712 H1FX-AS1Q4G0G2 97 aa4.74□□□□□ -1.65
LIG4-204ENST00000611712 ADM2Q7Z4H4 148 aa4.74□□□□□ -1.65
LIG4-204ENST00000611712 A8MUU9 505 aa4.73□□□□□ -1.65
LIG4-204ENST00000611712 C20orf166-AS1Q96NR2 134 aa4.72□□□□□ -1.65
LIG4-204ENST00000611712 S4R3F8 94 aa4.71□□□□□ -1.66
LIG4-204ENST00000611712 SPINT4Q6UDR6 99 aa4.69□□□□□ -1.66
LIG4-204ENST00000611712 DNAH10Q8IVF4 4471 aa4.68□□□□□ -1.66
LIG4-204ENST00000611712 CRIPTQ9P021 101 aa4.68□□□□□ -1.66
LIG4-204ENST00000611712 KRTAP21-3Q3LHN1 58 aa4.68□□□□□ -1.66
LIG4-204ENST00000611712 DNAH9Q9NYC9 4486 aa4.67□□□□□ -1.66
LIG4-204ENST00000611712 J3QL48 77 aa4.66□□□□□ -1.66
LIG4-204ENST00000611712 RPL37P61927 97 aaKnown RBP4.64□□□□□ -1.67
LIG4-204ENST00000611712 PLECQ15149 4684 aaKnown RBP4.64□□□□□ -1.67
LIG4-204ENST00000611712 ANK2Q01484 3957 aa4.63□□□□□ -1.67
LIG4-204ENST00000611712 H0YAA0 97 aa4.59□□□□□ -1.67
LIG4-204ENST00000611712 ROMO1P60602 79 aa4.59□□□□□ -1.68
LIG4-204ENST00000611712 A0A1B0GVY2 172 aa4.57□□□□□ -1.68
LIG4-204ENST00000611712 DNAH1Q9P2D7 4330 aa4.56□□□□□ -1.68
LIG4-204ENST00000611712 KRTAP25-1Q3LHN0 102 aa4.54□□□□□ -1.68
LIG4-204ENST00000611712 XP32Q5T750 250 aa4.54□□□□□ -1.68
LIG4-204ENST00000611712 STARD9Q9P2P6 4700 aa4.52□□□□□ -1.69
LIG4-204ENST00000611712 KRTAP3-1Q9BYR8 98 aa4.52□□□□□ -1.69
LIG4-204ENST00000611712 DNAH3Q8TD57 4116 aa4.52□□□□□ -1.69
LIG4-204ENST00000611712 R4GN34 69 aa4.51□□□□□ -1.69
LIG4-204ENST00000611712 VPS13DQ5THJ4 4388 aa4.51□□□□□ -1.69
LIG4-204ENST00000611712 SEC61BP60468 96 aaKnown RBP4.5□□□□□ -1.69
LIG4-204ENST00000611712 DNAH11Q96DT5 4516 aa4.49□□□□□ -1.69
LIG4-204ENST00000611712 CMYA5Q8N3K9 4069 aa4.49□□□□□ -1.69
LIG4-204ENST00000611712 KRTAP10-8P60410 259 aa4.49□□□□□ -1.69
LIG4-204ENST00000611712 M0QZ58 72 aa4.49□□□□□ -1.69
LIG4-204ENST00000611712 LYSTQ99698 3801 aa4.48□□□□□ -1.69
LIG4-204ENST00000611712 PRKDCP78527 4128 aaKnown RBP4.46□□□□□ -1.7
LIG4-204ENST00000611712 DNAH17Q9UFH2 4485 aa4.45□□□□□ -1.7
LIG4-204ENST00000611712 H3BS24 57 aa4.44□□□□□ -1.7
LIG4-204ENST00000611712 CAMK2N1Q7Z7J9 78 aa4.43□□□□□ -1.7
LIG4-204ENST00000611712 DNAH8Q96JB1 4490 aa4.43□□□□□ -1.7
LIG4-204ENST00000611712 P0C880 135 aa4.43□□□□□ -1.7
LIG4-204ENST00000611712 KMT2AQ03164 3969 aa4.43□□□□□ -1.7
LIG4-204ENST00000611712 KRTAP10-4P60372 401 aaPredicted RBP4.42□□□□□ -1.7
LIG4-204ENST00000611712 DNHD1Q96M86 4753 aa4.4□□□□□ -1.7
LIG4-204ENST00000611712 DNAH7Q8WXX0 4024 aa4.39□□□□□ -1.71
LIG4-204ENST00000611712 LRP1BQ9NZR2 4599 aa4.39□□□□□ -1.71
LIG4-204ENST00000611712 DNAH2Q9P225 4427 aa4.39□□□□□ -1.71
LIG4-204ENST00000611712 DNAH5Q8TE73 4624 aa4.38□□□□□ -1.71
LIG4-204ENST00000611712 TPRXLQ17RH7 258 aa4.38□□□□□ -1.71
LIG4-204ENST00000611712 C10orf95Q9H7T3 257 aa4.36□□□□□ -1.71
LIG4-204ENST00000611712 FRAS1Q86XX4 4008 aa4.33□□□□□ -1.72
LIG4-204ENST00000611712 DYNC2H1Q8NCM8 4307 aaKnown RBP4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms