RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 LY6G6CO95867 125 aa13.43□□□□□ -0.26
VPS53-211ENST00000571805 DNAH11Q96DT5 4516 aa13.41□□□□□ -0.26
VPS53-211ENST00000571805 NDUFS5O43920 106 aa13.41□□□□□ -0.26
VPS53-211ENST00000571805 PSPHP1O15172 72 aa13.39□□□□□ -0.27
VPS53-211ENST00000571805 CD164Q04900 197 aa13.39□□□□□ -0.27
VPS53-211ENST00000571805 PCOTHQ58A44 107 aa13.39□□□□□ -0.27
VPS53-211ENST00000571805 CIRBP-AS1Q8TBR5 109 aa13.37□□□□□ -0.27
VPS53-211ENST00000571805 KRTAP10-2P60368 255 aa13.36□□□□□ -0.27
VPS53-211ENST00000571805 V9GYY9 64 aa13.36□□□□□ -0.27
VPS53-211ENST00000571805 SPINK6Q6UWN8 80 aa13.35□□□□□ -0.27
VPS53-211ENST00000571805 SSBP3-AS1Q7Z2R9 100 aa13.33□□□□□ -0.28
VPS53-211ENST00000571805 Q8N9P0 234 aaPredicted RBP13.32□□□□□ -0.28
VPS53-211ENST00000571805 COA5Q86WW8 74 aa13.31□□□□□ -0.28
VPS53-211ENST00000571805 A8MUN3 132 aa13.31□□□□□ -0.28
VPS53-211ENST00000571805 C1orf195Q5TG92 126 aa13.27□□□□□ -0.29
VPS53-211ENST00000571805 PKD1P98161 4303 aa13.25□□□□□ -0.29
VPS53-211ENST00000571805 KRTAP13-3Q3SY46 172 aa13.25□□□□□ -0.29
VPS53-211ENST00000571805 Q5W150 140 aa13.25□□□□□ -0.29
VPS53-211ENST00000571805 Q5VV11 94 aa13.24□□□□□ -0.29
VPS53-211ENST00000571805 LIMD2Q9BT23 127 aa13.23□□□□□ -0.29
VPS53-211ENST00000571805 LRP1BQ9NZR2 4599 aa13.22□□□□□ -0.29
VPS53-211ENST00000571805 Q6ZSA8 131 aa13.22□□□□□ -0.29
VPS53-211ENST00000571805 KRTAP13-2Q52LG2 175 aa13.2□□□□□ -0.3
VPS53-211ENST00000571805 KRTAP10-1P60331 282 aa13.2□□□□□ -0.3
VPS53-211ENST00000571805 LOC101927531A0A1B0GV80 90 aa13.19□□□□□ -0.3
VPS53-211ENST00000571805 C8orf87E5RJ46 101 aa13.18□□□□□ -0.3
VPS53-211ENST00000571805 FAT2Q9NYQ8 4349 aa13.17□□□□□ -0.3
VPS53-211ENST00000571805 HYDINQ4G0P3 5121 aa13.16□□□□□ -0.3
VPS53-211ENST00000571805 HRES1P13985 223 aa13.14□□□□□ -0.31
VPS53-211ENST00000571805 PRR15LQ9BU68 103 aa13.14□□□□□ -0.31
VPS53-211ENST00000571805 LINC00313P59037 77 aa13.1□□□□□ -0.31
VPS53-211ENST00000571805 CHKB-CPT1BH3BT56 60 aa13.07□□□□□ -0.32
VPS53-211ENST00000571805 KRTAP1-4P0C5Y4 121 aa13.07□□□□□ -0.32
VPS53-211ENST00000571805 Q75L30 129 aa13.05□□□□□ -0.32
VPS53-211ENST00000571805 A8MU10 97 aa13.03□□□□□ -0.32
VPS53-211ENST00000571805 LINC01558Q9Y6Z2 57 aa13.03□□□□□ -0.32
VPS53-211ENST00000571805 VPS13BQ7Z7G8 4022 aa13.03□□□□□ -0.32
VPS53-211ENST00000571805 SPAG11AQ6PDA7 123 aa13.03□□□□□ -0.32
VPS53-211ENST00000571805 FAM229AH3BQW9 127 aa12.99□□□□□ -0.33
VPS53-211ENST00000571805 KRTAP16-1A8MUX0 517 aa12.99□□□□□ -0.33
VPS53-211ENST00000571805 RETNLBQ9BQ08 111 aa12.94□□□□□ -0.34
VPS53-211ENST00000571805 IGKV2-30P06310 120 aa12.91□□□□□ -0.34
VPS53-211ENST00000571805 PRR26Q8N8Z3 221 aa12.91□□□□□ -0.34
VPS53-211ENST00000571805 ACYP2P14621 99 aa12.91□□□□□ -0.34
VPS53-211ENST00000571805 LCA10Q71F78 164 aa12.91□□□□□ -0.34
VPS53-211ENST00000571805 PLA2G1BP04054 148 aaKnown RBP12.89□□□□□ -0.35
VPS53-211ENST00000571805 A6NED7 52 aa12.89□□□□□ -0.35
VPS53-211ENST00000571805 DMAC1Q96GE9 116 aa12.89□□□□□ -0.35
VPS53-211ENST00000571805 KRTAP21-3Q3LHN1 58 aa12.86□□□□□ -0.35
VPS53-211ENST00000571805 TYMSOSQ8TAI1 123 aa12.85□□□□□ -0.35
VPS53-211ENST00000571805 C4orf48Q5BLP8 95 aa12.83□□□□□ -0.36
VPS53-211ENST00000571805 SPINK1P00995 79 aa12.81□□□□□ -0.36
VPS53-211ENST00000571805 PKHD1P08F94 4074 aa12.79□□□□□ -0.36
VPS53-211ENST00000571805 CDC42SE1Q9NRR8 79 aa12.79□□□□□ -0.36
VPS53-211ENST00000571805 SPINK7P58062 85 aa12.76□□□□□ -0.37
VPS53-211ENST00000571805 PMAIP1Q13794 54 aa12.76□□□□□ -0.37
VPS53-211ENST00000571805 ATP11AUNQ6ZP68 121 aa12.75□□□□□ -0.37
VPS53-211ENST00000571805 SACSQ9NZJ4 4579 aa12.74□□□□□ -0.37
VPS53-211ENST00000571805 SPTSSBQ8NFR3 76 aa12.71□□□□□ -0.37
VPS53-211ENST00000571805 IGKV2D-30A0A075B6S6 120 aa12.71□□□□□ -0.38
VPS53-211ENST00000571805 LINC00304Q8N9R0 145 aa12.67□□□□□ -0.38
VPS53-211ENST00000571805 DYNC1H1Q14204 4646 aaKnown RBP12.67□□□□□ -0.38
VPS53-211ENST00000571805 RPS29P62273 56 aaKnown RBP12.66□□□□□ -0.38
VPS53-211ENST00000571805 SMR3BP02814 79 aaPredicted RBP12.59□□□□□ -0.39
VPS53-211ENST00000571805 A6NN06 94 aa12.58□□□□□ -0.4
VPS53-211ENST00000571805 C7orf65Q6ZTY9 151 aa12.56□□□□□ -0.4
VPS53-211ENST00000571805 A0A1B0GU69 56 aa12.53□□□□□ -0.4
VPS53-211ENST00000571805 A0A1B0GVY2 172 aa12.51□□□□□ -0.41
VPS53-211ENST00000571805 PKHD1L1Q86WI1 4243 aa12.51□□□□□ -0.41
VPS53-211ENST00000571805 FAT1Q14517 4588 aa12.51□□□□□ -0.41
VPS53-211ENST00000571805 APOBP04114 4563 aaKnown RBP12.51□□□□□ -0.41
VPS53-211ENST00000571805 KRTAP10-4P60372 401 aaPredicted RBP12.5□□□□□ -0.41
VPS53-211ENST00000571805 KTN1-AS1Q86SY8 53 aa12.47□□□□□ -0.41
VPS53-211ENST00000571805 Q8N1X5 172 aa12.41□□□□□ -0.42
VPS53-211ENST00000571805 A8MUU9 505 aa12.4□□□□□ -0.42
VPS53-211ENST00000571805 C20orf166-AS1Q96NR2 134 aa12.4□□□□□ -0.42
VPS53-211ENST00000571805 C9orf92A6NGG3 77 aa12.4□□□□□ -0.43
VPS53-211ENST00000571805 SPATA8Q6RVD6 105 aa12.37□□□□□ -0.43
VPS53-211ENST00000571805 SEC61GP60059 68 aa12.34□□□□□ -0.43
VPS53-211ENST00000571805 RYR2Q92736 4967 aa12.33□□□□□ -0.44
VPS53-211ENST00000571805 UQCR11O14957 56 aa12.3□□□□□ -0.44
VPS53-211ENST00000571805 MIR22HGQ0VDD5 57 aa12.27□□□□□ -0.44
VPS53-211ENST00000571805 KRTAP3-1Q9BYR8 98 aa12.22□□□□□ -0.45
VPS53-211ENST00000571805 FLG2Q5D862 2391 aaPredicted RBP12.17□□□□□ -0.46
VPS53-211ENST00000571805 KMT2CQ8NEZ4 4911 aaKnown RBP12.17□□□□□ -0.46
VPS53-211ENST00000571805 RBM12B-AS1Q9P1G2 102 aa12.14□□□□□ -0.47
VPS53-211ENST00000571805 FAT3Q8TDW7 4589 aa12.11□□□□□ -0.47
VPS53-211ENST00000571805 TNXBP22105 4242 aa12.07□□□□□ -0.48
VPS53-211ENST00000571805 LRP1Q07954 4544 aaKnown RBP12.05□□□□□ -0.48
VPS53-211ENST00000571805 KRTAP10-8P60410 259 aa12.01□□□□□ -0.49
VPS53-211ENST00000571805 COX6B2Q6YFQ2 88 aa11.99□□□□□ -0.49
VPS53-211ENST00000571805 ADM2Q7Z4H4 148 aa11.97□□□□□ -0.49
VPS53-211ENST00000571805 PRAC1Q96KF2 57 aa11.96□□□□□ -0.5
VPS53-211ENST00000571805 HSPG2P98160 4391 aa11.94□□□□□ -0.5
VPS53-211ENST00000571805 H0YAA0 97 aa11.93□□□□□ -0.5
VPS53-211ENST00000571805 Q5VSD8 79 aa11.9□□□□□ -0.5
VPS53-211ENST00000571805 A0A1B0GU33 70 aa11.88□□□□□ -0.51
VPS53-211ENST00000571805 H1FX-AS1Q4G0G2 97 aa11.85□□□□□ -0.51
VPS53-211ENST00000571805 RYR1P21817 5038 aa11.82□□□□□ -0.52
VPS53-211ENST00000571805 RPL37P61927 97 aaKnown RBP11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms