RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 Q6ZQT0 140 aa4.83□□□□□ -1.64
SF3B3-212ENST00000568539 PDE6GP18545 87 aa4.82□□□□□ -1.64
SF3B3-212ENST00000568539 Q5XG85 94 aa4.82□□□□□ -1.64
SF3B3-212ENST00000568539 LIMD2Q9BT23 127 aa4.82□□□□□ -1.64
SF3B3-212ENST00000568539 ETDBQ3ZM63 59 aa4.81□□□□□ -1.64
SF3B3-212ENST00000568539 A0A087WSZ3 146 aa4.8□□□□□ -1.64
SF3B3-212ENST00000568539 VPS25Q9BRG1 176 aa4.8□□□□□ -1.64
SF3B3-212ENST00000568539 ASB16-AS1Q495Z4 193 aa4.79□□□□□ -1.64
SF3B3-212ENST00000568539 LCE1DQ5T752 114 aa4.79□□□□□ -1.64
SF3B3-212ENST00000568539 A0A1B0GW54 56 aa4.78□□□□□ -1.64
SF3B3-212ENST00000568539 K7ERU9 68 aa4.78□□□□□ -1.64
SF3B3-212ENST00000568539 RETNLBQ9BQ08 111 aa4.78□□□□□ -1.64
SF3B3-212ENST00000568539 C1orf195Q5TG92 126 aa4.77□□□□□ -1.65
SF3B3-212ENST00000568539 SS18L2Q9UHA2 77 aa4.77□□□□□ -1.65
SF3B3-212ENST00000568539 A0A0A0MQY5 61 aa4.75□□□□□ -1.65
SF3B3-212ENST00000568539 PRR4Q16378 134 aa4.74□□□□□ -1.65
SF3B3-212ENST00000568539 FP248Q71RG6 208 aaPredicted RBP4.74□□□□□ -1.65
SF3B3-212ENST00000568539 Q96NJ1 140 aa4.74□□□□□ -1.65
SF3B3-212ENST00000568539 LINC00472Q9H8W2 130 aa4.73□□□□□ -1.65
SF3B3-212ENST00000568539 MUC2Q02817 5179 aa4.72□□□□□ -1.65
SF3B3-212ENST00000568539 IGLV7-46A0A075B6I9 117 aa4.72□□□□□ -1.65
SF3B3-212ENST00000568539 KRTAP4-2Q9BYR5 136 aa4.71□□□□□ -1.66
SF3B3-212ENST00000568539 LINC00846Q9NV44 126 aa4.71□□□□□ -1.66
SF3B3-212ENST00000568539 LPAP08519 4548 aa4.71□□□□□ -1.66
SF3B3-212ENST00000568539 NREPQ16612 68 aa4.7□□□□□ -1.66
SF3B3-212ENST00000568539 DEFB116Q30KQ4 102 aa4.7□□□□□ -1.66
SF3B3-212ENST00000568539 KRTAP4-9Q9BYQ8 210 aa4.7□□□□□ -1.66
SF3B3-212ENST00000568539 FAM240AA0A1B0GVK7 77 aa4.69□□□□□ -1.66
SF3B3-212ENST00000568539 IGKV4-1P06312 121 aa4.69□□□□□ -1.66
SF3B3-212ENST00000568539 Q6ZVQ6 151 aa4.69□□□□□ -1.66
SF3B3-212ENST00000568539 KRTAP9-3Q9BYQ3 159 aa4.69□□□□□ -1.66
SF3B3-212ENST00000568539 J3KT08 172 aa4.68□□□□□ -1.66
SF3B3-212ENST00000568539 ACYP1P07311 99 aa4.68□□□□□ -1.66
SF3B3-212ENST00000568539 TPRXLQ17RH7 258 aa4.68□□□□□ -1.66
SF3B3-212ENST00000568539 KRTAP13-3Q3SY46 172 aa4.68□□□□□ -1.66
SF3B3-212ENST00000568539 SIGMAR1Q99720 223 aa4.67□□□□□ -1.66
SF3B3-212ENST00000568539 UBL5Q9BZL1 73 aa4.67□□□□□ -1.66
SF3B3-212ENST00000568539 J3QR89 54 aa4.65□□□□□ -1.67
SF3B3-212ENST00000568539 A8MWP4 228 aa4.64□□□□□ -1.67
SF3B3-212ENST00000568539 BPY2O14599 106 aa4.64□□□□□ -1.67
SF3B3-212ENST00000568539 DSCR10P59022 87 aa4.64□□□□□ -1.67
SF3B3-212ENST00000568539 KRTAP15-1Q3LI76 137 aa4.64□□□□□ -1.67
SF3B3-212ENST00000568539 FSIP2Q5CZC0 6907 aa4.63□□□□□ -1.67
SF3B3-212ENST00000568539 IGKV3D-7A0A0C4DH55 119 aa4.63□□□□□ -1.67
SF3B3-212ENST00000568539 A0A1B0GVX0 72 aa4.63□□□□□ -1.67
SF3B3-212ENST00000568539 C9orf92A6NGG3 77 aa4.63□□□□□ -1.67
SF3B3-212ENST00000568539 IGHV6-1A0A0B4J1U7 121 aa4.62□□□□□ -1.67
SF3B3-212ENST00000568539 NDUFB1O75438 58 aa4.62□□□□□ -1.67
SF3B3-212ENST00000568539 K7EQZ3 153 aa4.61□□□□□ -1.67
SF3B3-212ENST00000568539 NOTCH2NLQ7Z3S9 236 aa4.61□□□□□ -1.67
SF3B3-212ENST00000568539 PRR15Q8IV56 129 aa4.61□□□□□ -1.67
SF3B3-212ENST00000568539 C8orf87E5RJ46 101 aa4.6□□□□□ -1.67
SF3B3-212ENST00000568539 LINC00313P59037 77 aa4.6□□□□□ -1.67
SF3B3-212ENST00000568539 CXCL6P80162 114 aa4.6□□□□□ -1.67
SF3B3-212ENST00000568539 Q8N9L7 120 aa4.59□□□□□ -1.67
SF3B3-212ENST00000568539 KRTAP16-1A8MUX0 517 aa4.58□□□□□ -1.68
SF3B3-212ENST00000568539 C5orf47Q569G3 176 aa4.58□□□□□ -1.68
SF3B3-212ENST00000568539 ATP5EP2Q5VTU8 51 aa4.58□□□□□ -1.68
SF3B3-212ENST00000568539 LINC00643Q86TS7 51 aa4.58□□□□□ -1.68
SF3B3-212ENST00000568539 C8orf17Q9NRJ1 99 aa4.58□□□□□ -1.68
SF3B3-212ENST00000568539 MMP24-AS1A0A0U1RRL7 71 aa4.57□□□□□ -1.68
SF3B3-212ENST00000568539 C20orf166-AS1Q96NR2 134 aa4.56□□□□□ -1.68
SF3B3-212ENST00000568539 RPL37P61927 97 aaKnown RBP4.55□□□□□ -1.68
SF3B3-212ENST00000568539 MPLKIPQ8TAP9 179 aa4.55□□□□□ -1.68
SF3B3-212ENST00000568539 A8MUU9 505 aa4.54□□□□□ -1.68
SF3B3-212ENST00000568539 KRTAP5-3Q6L8H2 238 aa4.54□□□□□ -1.68
SF3B3-212ENST00000568539 Q75L30 129 aa4.54□□□□□ -1.68
SF3B3-212ENST00000568539 hDV103S1A0JD37 113 aa4.53□□□□□ -1.68
SF3B3-212ENST00000568539 TMEM254Q8TBM7 123 aa4.53□□□□□ -1.68
SF3B3-212ENST00000568539 HCG22E2RYF7 251 aa4.52□□□□□ -1.69
SF3B3-212ENST00000568539 SEC61BP60468 96 aaKnown RBP4.52□□□□□ -1.69
SF3B3-212ENST00000568539 CASC2Q6XLA1 102 aa4.52□□□□□ -1.69
SF3B3-212ENST00000568539 WFDC13Q8IUB5 93 aa4.52□□□□□ -1.69
SF3B3-212ENST00000568539 Q8N9P0 234 aaPredicted RBP4.52□□□□□ -1.69
SF3B3-212ENST00000568539 MRPL34Q9BQ48 92 aaKnown RBP4.52□□□□□ -1.69
SF3B3-212ENST00000568539 HIST1H4AP62805 103 aaKnown RBP4.51□□□□□ -1.69
SF3B3-212ENST00000568539 PCOTHQ58A44 107 aa4.5□□□□□ -1.69
SF3B3-212ENST00000568539 LCE5AQ5TCM9 118 aa4.5□□□□□ -1.69
SF3B3-212ENST00000568539 A0A087WVE0 104 aa4.49□□□□□ -1.69
SF3B3-212ENST00000568539 MT-ATP8P03928 68 aa4.48□□□□□ -1.69
SF3B3-212ENST00000568539 ATP11AUNQ6ZP68 121 aa4.48□□□□□ -1.69
SF3B3-212ENST00000568539 KRTAP4-11Q9BYQ6 195 aa4.47□□□□□ -1.69
SF3B3-212ENST00000568539 NDUFS5O43920 106 aa4.46□□□□□ -1.7
SF3B3-212ENST00000568539 SMIM20Q8N5G0 67 aa4.46□□□□□ -1.7
SF3B3-212ENST00000568539 ZCCHC13Q8WW36 166 aaKnown RBP4.46□□□□□ -1.7
SF3B3-212ENST00000568539 IMUPQ9GZP8 106 aa4.46□□□□□ -1.7
SF3B3-212ENST00000568539 KRTAP9-8Q9BYQ0 159 aa4.45□□□□□ -1.7
SF3B3-212ENST00000568539 KRTAP4-1Q9BYQ7 146 aa4.45□□□□□ -1.7
SF3B3-212ENST00000568539 ANAPC13Q9BS18 74 aa4.44□□□□□ -1.7
SF3B3-212ENST00000568539 CRCT1Q9UGL9 99 aa4.44□□□□□ -1.7
SF3B3-212ENST00000568539 MUC17Q685J3 4493 aa4.42□□□□□ -1.7
SF3B3-212ENST00000568539 Q5W150 140 aa4.42□□□□□ -1.7
SF3B3-212ENST00000568539 TP53AIP1Q9HCN2 124 aa4.42□□□□□ -1.7
SF3B3-212ENST00000568539 RPS28P62857 69 aaKnown RBP4.41□□□□□ -1.7
SF3B3-212ENST00000568539 OCR1Q9BZK8 76 aa4.38□□□□□ -1.71
SF3B3-212ENST00000568539 FAM236AA0A1B0GUQ0 79 aa4.37□□□□□ -1.71
SF3B3-212ENST00000568539 FAM236BA0A1B0GV22 79 aa4.37□□□□□ -1.71
SF3B3-212ENST00000568539 UQCRQO14949 82 aa4.37□□□□□ -1.71
SF3B3-212ENST00000568539 SPINK7P58062 85 aa4.37□□□□□ -1.71
SF3B3-212ENST00000568539 TRAV22A0A0B4J277 110 aa4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 107.9 ms