RNA–Protein interactions for RNA: ENST00000566843.1

COMMD4-215, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 2,284 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-215ENST00000566843 SPINK7P58062 85 aa9.36□□□□□ -0.91
COMMD4-215ENST00000566843 WWC2-AS2Q96NR7 200 aa9.35□□□□□ -0.91
COMMD4-215ENST00000566843 CSMD3Q7Z407 3707 aa9.35□□□□□ -0.91
COMMD4-215ENST00000566843 SPACA4Q8TDM5 124 aa9.34□□□□□ -0.91
COMMD4-215ENST00000566843 ZNF706Q9Y5V0 76 aaPredicted RBP9.34□□□□□ -0.91
COMMD4-215ENST00000566843 A0A087X002 238 aa9.34□□□□□ -0.91
COMMD4-215ENST00000566843 NOTCH2NLQ7Z3S9 236 aa9.34□□□□□ -0.91
COMMD4-215ENST00000566843 LYSTQ99698 3801 aa9.33□□□□□ -0.92
COMMD4-215ENST00000566843 KRTAP13-3Q3SY46 172 aa9.32□□□□□ -0.92
COMMD4-215ENST00000566843 Q6ZRN7 208 aaPredicted RBP9.31□□□□□ -0.92
COMMD4-215ENST00000566843 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.31□□□□□ -0.92
COMMD4-215ENST00000566843 DYNC2H1Q8NCM8 4307 aaKnown RBP9.29□□□□□ -0.92
COMMD4-215ENST00000566843 NBDYA0A0U1RRE5 68 aa9.29□□□□□ -0.92
COMMD4-215ENST00000566843 H3BS24 57 aa9.28□□□□□ -0.92
COMMD4-215ENST00000566843 DNAH7Q8WXX0 4024 aa9.28□□□□□ -0.92
COMMD4-215ENST00000566843 TGP01266 2768 aa9.27□□□□□ -0.93
COMMD4-215ENST00000566843 Q5W150 140 aa9.27□□□□□ -0.93
COMMD4-215ENST00000566843 STARD9Q9P2P6 4700 aa9.26□□□□□ -0.93
COMMD4-215ENST00000566843 NUPR2A6NF83 97 aa9.26□□□□□ -0.93
COMMD4-215ENST00000566843 PRR26Q8N8Z3 221 aa9.26□□□□□ -0.93
COMMD4-215ENST00000566843 PLECQ15149 4684 aaKnown RBP9.24□□□□□ -0.93
COMMD4-215ENST00000566843 IGLV5-52A0A0A0MRZ9 124 aa9.24□□□□□ -0.93
COMMD4-215ENST00000566843 ALMS1Q8TCU4 4167 aa9.23□□□□□ -0.93
COMMD4-215ENST00000566843 PSORS1C2Q9UIG4 136 aa9.23□□□□□ -0.93
COMMD4-215ENST00000566843 ACYP2P14621 99 aa9.22□□□□□ -0.93
COMMD4-215ENST00000566843 ANAPC11Q9NYG5 84 aa9.22□□□□□ -0.93
COMMD4-215ENST00000566843 ZNF861PO60384 105 aa9.21□□□□□ -0.93
COMMD4-215ENST00000566843 DMAC1Q96GE9 116 aa9.18□□□□□ -0.94
COMMD4-215ENST00000566843 DNAH8Q96JB1 4490 aa9.16□□□□□ -0.94
COMMD4-215ENST00000566843 A0A087WTM6 91 aa9.15□□□□□ -0.94
COMMD4-215ENST00000566843 SPINK6Q6UWN8 80 aa9.15□□□□□ -0.94
COMMD4-215ENST00000566843 LINC00313P59037 77 aa9.13□□□□□ -0.95
COMMD4-215ENST00000566843 LINC01554Q52M75 96 aa9.12□□□□□ -0.95
COMMD4-215ENST00000566843 RTL8CO15255 209 aa9.11□□□□□ -0.95
COMMD4-215ENST00000566843 FAM229AH3BQW9 127 aa9.08□□□□□ -0.96
COMMD4-215ENST00000566843 SPATA8Q6RVD6 105 aa9.07□□□□□ -0.96
COMMD4-215ENST00000566843 SSBP3-AS1Q7Z2R9 100 aa9.07□□□□□ -0.96
COMMD4-215ENST00000566843 CIRBP-AS1Q8TBR5 109 aa9.07□□□□□ -0.96
COMMD4-215ENST00000566843 KMT2AQ03164 3969 aa9.07□□□□□ -0.96
COMMD4-215ENST00000566843 IGLV7-43P04211 117 aa9.06□□□□□ -0.96
COMMD4-215ENST00000566843 IGKV2-30P06310 120 aa9.06□□□□□ -0.96
COMMD4-215ENST00000566843 A0A1B0GU69 56 aa9.06□□□□□ -0.96
COMMD4-215ENST00000566843 PLA2G1BP04054 148 aaKnown RBP9.06□□□□□ -0.96
COMMD4-215ENST00000566843 VPS13DQ5THJ4 4388 aa9.06□□□□□ -0.96
COMMD4-215ENST00000566843 LY6G6CO95867 125 aa9.05□□□□□ -0.96
COMMD4-215ENST00000566843 PRAC1Q96KF2 57 aa9.05□□□□□ -0.96
COMMD4-215ENST00000566843 DNAH17Q9UFH2 4485 aa9.04□□□□□ -0.96
COMMD4-215ENST00000566843 HECTD4Q9Y4D8 3996 aa9.01□□□□□ -0.97
COMMD4-215ENST00000566843 FRAS1Q86XX4 4008 aa8.98□□□□□ -0.97
COMMD4-215ENST00000566843 KRTAP16-1A8MUX0 517 aa8.96□□□□□ -0.97
COMMD4-215ENST00000566843 RETNLBQ9BQ08 111 aa8.96□□□□□ -0.97
COMMD4-215ENST00000566843 MIR22HGQ0VDD5 57 aa8.96□□□□□ -0.98
COMMD4-215ENST00000566843 ADM2Q7Z4H4 148 aa8.96□□□□□ -0.98
COMMD4-215ENST00000566843 UQCR11O14957 56 aa8.95□□□□□ -0.98
COMMD4-215ENST00000566843 DNAH2Q9P225 4427 aa8.92□□□□□ -0.98
COMMD4-215ENST00000566843 HYDINQ4G0P3 5121 aa8.91□□□□□ -0.98
COMMD4-215ENST00000566843 C1orf134Q5TEV5 83 aa8.89□□□□□ -0.99
COMMD4-215ENST00000566843 KRTAP13-2Q52LG2 175 aa8.88□□□□□ -0.99
COMMD4-215ENST00000566843 IGKV2D-30A0A075B6S6 120 aa8.86□□□□□ -0.99
COMMD4-215ENST00000566843 DNAH6Q9C0G6 4158 aa8.84□□□□□ -0.99
COMMD4-215ENST00000566843 SACSQ9NZJ4 4579 aa8.8□□□□□ -1
COMMD4-215ENST00000566843 DNAH11Q96DT5 4516 aa8.75□□□□□ -1.01
COMMD4-215ENST00000566843 KMT2CQ8NEZ4 4911 aaKnown RBP8.74□□□□□ -1.01
COMMD4-215ENST00000566843 CSAG1Q6PB30 78 aa8.73□□□□□ -1.01
COMMD4-215ENST00000566843 KRTAP1-4P0C5Y4 121 aa8.73□□□□□ -1.01
COMMD4-215ENST00000566843 KRTAP10-2P60368 255 aa8.73□□□□□ -1.01
COMMD4-215ENST00000566843 FAT2Q9NYQ8 4349 aa8.72□□□□□ -1.01
COMMD4-215ENST00000566843 Q6ZSA8 131 aa8.68□□□□□ -1.02
COMMD4-215ENST00000566843 DNAH5Q8TE73 4624 aa8.68□□□□□ -1.02
COMMD4-215ENST00000566843 RYR2Q92736 4967 aa8.67□□□□□ -1.02
COMMD4-215ENST00000566843 SPINK1P00995 79 aa8.65□□□□□ -1.02
COMMD4-215ENST00000566843 Q8N1X5 172 aa8.65□□□□□ -1.02
COMMD4-215ENST00000566843 PKD1P98161 4303 aa8.63□□□□□ -1.03
COMMD4-215ENST00000566843 KRTAP10-1P60331 282 aa8.61□□□□□ -1.03
COMMD4-215ENST00000566843 A8MUU9 505 aa8.59□□□□□ -1.03
COMMD4-215ENST00000566843 H0YAA0 97 aa8.59□□□□□ -1.03
COMMD4-215ENST00000566843 LRP1BQ9NZR2 4599 aa8.59□□□□□ -1.03
COMMD4-215ENST00000566843 TYMSOSQ8TAI1 123 aa8.59□□□□□ -1.03
COMMD4-215ENST00000566843 PKHD1P08F94 4074 aa8.57□□□□□ -1.04
COMMD4-215ENST00000566843 RYR3Q15413 4870 aa8.55□□□□□ -1.04
COMMD4-215ENST00000566843 RPS29P62273 56 aaKnown RBP8.54□□□□□ -1.04
COMMD4-215ENST00000566843 A0A1B0GVY2 172 aa8.53□□□□□ -1.04
COMMD4-215ENST00000566843 ROMO1P60602 79 aa8.51□□□□□ -1.05
COMMD4-215ENST00000566843 LINC00304Q8N9R0 145 aa8.51□□□□□ -1.05
COMMD4-215ENST00000566843 A0A1B0GU33 70 aa8.5□□□□□ -1.05
COMMD4-215ENST00000566843 KRTAP3-1Q9BYR8 98 aa8.49□□□□□ -1.05
COMMD4-215ENST00000566843 KRTAP25-1Q3LHN0 102 aa8.49□□□□□ -1.05
COMMD4-215ENST00000566843 H1FX-AS1Q4G0G2 97 aa8.47□□□□□ -1.05
COMMD4-215ENST00000566843 C20orf166-AS1Q96NR2 134 aa8.46□□□□□ -1.05
COMMD4-215ENST00000566843 VPS13BQ7Z7G8 4022 aa8.44□□□□□ -1.06
COMMD4-215ENST00000566843 DYNC1H1Q14204 4646 aaKnown RBP8.44□□□□□ -1.06
COMMD4-215ENST00000566843 SMR3BP02814 79 aaPredicted RBP8.36□□□□□ -1.07
COMMD4-215ENST00000566843 C9orf92A6NGG3 77 aa8.34□□□□□ -1.07
COMMD4-215ENST00000566843 APOBP04114 4563 aaKnown RBP8.33□□□□□ -1.08
COMMD4-215ENST00000566843 COX6B2Q6YFQ2 88 aa8.29□□□□□ -1.08
COMMD4-215ENST00000566843 K7ERS5 55 aa8.29□□□□□ -1.08
COMMD4-215ENST00000566843 PKHD1L1Q86WI1 4243 aa8.26□□□□□ -1.09
COMMD4-215ENST00000566843 FAT1Q14517 4588 aa8.26□□□□□ -1.09
COMMD4-215ENST00000566843 P0C880 135 aa8.26□□□□□ -1.09
COMMD4-215ENST00000566843 EPPK1P58107 5090 aaKnown RBP8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms