RNA–Protein interactions for RNA: ENST00000562836.5

CDH1-205, Transcript of cadherin 1, humanhuman

TSL 1 (best)

Gene CDH1, Length 2,759 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-205ENST00000562836 PDZD2O15018 2839 aa5.19□□□□□ -1.58
CDH1-205ENST00000562836 KRTAP13-3Q3SY46 172 aa5.19□□□□□ -1.58
CDH1-205ENST00000562836 NOTCH2Q04721 2471 aa5.19□□□□□ -1.58
CDH1-205ENST00000562836 Q8N1X5 172 aa5.18□□□□□ -1.58
CDH1-205ENST00000562836 FASNP49327 2511 aaKnown RBP5.18□□□□□ -1.58
CDH1-205ENST00000562836 SPRR1AP35321 89 aa5.18□□□□□ -1.58
CDH1-205ENST00000562836 PRLHP81277 87 aa5.18□□□□□ -1.58
CDH1-205ENST00000562836 C14orf177Q52M58 125 aa5.18□□□□□ -1.58
CDH1-205ENST00000562836 A0A096LNI7 61 aa5.17□□□□□ -1.58
CDH1-205ENST00000562836 NIPBLQ6KC79 2804 aaeCLIP5.17□□□□□ -1.58
CDH1-205ENST00000562836 KRTAP1-3Q8IUG1 177 aa5.16□□□□□ -1.58
CDH1-205ENST00000562836 UNC79Q9P2D8 2635 aa5.16□□□□□ -1.58
CDH1-205ENST00000562836 CSMD3Q7Z407 3707 aa5.14□□□□□ -1.59
CDH1-205ENST00000562836 FN1P02751 2386 aaKnown RBP5.14□□□□□ -1.59
CDH1-205ENST00000562836 H1FX-AS1Q4G0G2 97 aa5.14□□□□□ -1.59
CDH1-205ENST00000562836 ANK3Q12955 4377 aaKnown RBP5.13□□□□□ -1.59
CDH1-205ENST00000562836 SPACA4Q8TDM5 124 aa5.13□□□□□ -1.59
CDH1-205ENST00000562836 TYMSOSQ8TAI1 123 aa5.12□□□□□ -1.59
CDH1-205ENST00000562836 J3QKU1 62 aa5.12□□□□□ -1.59
CDH1-205ENST00000562836 R4GN34 69 aa5.11□□□□□ -1.59
CDH1-205ENST00000562836 ANAPC11Q9NYG5 84 aa5.1□□□□□ -1.59
CDH1-205ENST00000562836 SMR3AQ99954 134 aa5.1□□□□□ -1.59
CDH1-205ENST00000562836 DEFB135Q30KP9 77 aa5.1□□□□□ -1.59
CDH1-205ENST00000562836 PRO2289Q9P1D8 64 aa5.1□□□□□ -1.59
CDH1-205ENST00000562836 DEFB4AO15263 64 aa5.09□□□□□ -1.59
CDH1-205ENST00000562836 SPART-AS1P0CW21 52 aa5.09□□□□□ -1.59
CDH1-205ENST00000562836 KRTAP24-1Q3LI83 254 aa5.09□□□□□ -1.59
CDH1-205ENST00000562836 HIVEP2P31629 2446 aa5.07□□□□□ -1.6
CDH1-205ENST00000562836 KRTAP1-1Q07627 177 aa5.07□□□□□ -1.6
CDH1-205ENST00000562836 HTN3P15516 51 aa5.05□□□□□ -1.6
CDH1-205ENST00000562836 IGKV2-30P06310 120 aa5.04□□□□□ -1.6
CDH1-205ENST00000562836 H3BNG1 76 aa5.04□□□□□ -1.6
CDH1-205ENST00000562836 KRTAP10-3P60369 221 aa5.04□□□□□ -1.6
CDH1-205ENST00000562836 KRTAP10-8P60410 259 aa5.04□□□□□ -1.6
CDH1-205ENST00000562836 VWFP04275 2813 aa5.03□□□□□ -1.6
CDH1-205ENST00000562836 NBEAL2Q6ZNJ1 2754 aa5.03□□□□□ -1.6
CDH1-205ENST00000562836 FLNBO75369 2602 aaKnown RBP5.03□□□□□ -1.6
CDH1-205ENST00000562836 KRTAP7-1Q8IUC3 87 aa5.02□□□□□ -1.61
CDH1-205ENST00000562836 HIVEP1P15822 2718 aa5.02□□□□□ -1.61
CDH1-205ENST00000562836 PLAC4Q8WY50 150 aa5.02□□□□□ -1.61
CDH1-205ENST00000562836 TRRAPQ9Y4A5 3859 aa5.01□□□□□ -1.61
CDH1-205ENST00000562836 RPL37P61927 97 aaKnown RBP5.01□□□□□ -1.61
CDH1-205ENST00000562836 TENM1Q9UKZ4 2725 aa5.01□□□□□ -1.61
CDH1-205ENST00000562836 NSD1Q96L73 2696 aaPredicted RBP5□□□□□ -1.61
CDH1-205ENST00000562836 DMBT1Q9UGM3 2413 aaPredicted RBP5□□□□□ -1.61
CDH1-205ENST00000562836 IGKV2D-30A0A075B6S6 120 aa4.99□□□□□ -1.61
CDH1-205ENST00000562836 LINC01556Q5JQF7 62 aa4.98□□□□□ -1.61
CDH1-205ENST00000562836 ATRQ13535 2644 aa4.97□□□□□ -1.61
CDH1-205ENST00000562836 COX6B2Q6YFQ2 88 aa4.97□□□□□ -1.61
CDH1-205ENST00000562836 TEP1Q99973 2627 aaKnown RBP4.96□□□□□ -1.62
CDH1-205ENST00000562836 A0A0D9SG42 100 aa4.94□□□□□ -1.62
CDH1-205ENST00000562836 SPINK6Q6UWN8 80 aa4.93□□□□□ -1.62
CDH1-205ENST00000562836 SPRR1BP22528 89 aa4.93□□□□□ -1.62
CDH1-205ENST00000562836 LCE2DQ5TA82 110 aaPredicted RBP4.93□□□□□ -1.62
CDH1-205ENST00000562836 APLNQ9ULZ1 77 aa4.9□□□□□ -1.62
CDH1-205ENST00000562836 BAHCC1Q9P281 2608 aa4.88□□□□□ -1.63
CDH1-205ENST00000562836 PKD1L1Q8TDX9 2849 aa4.87□□□□□ -1.63
CDH1-205ENST00000562836 XP32Q5T750 250 aa4.87□□□□□ -1.63
CDH1-205ENST00000562836 ANK2Q01484 3957 aa4.87□□□□□ -1.63
CDH1-205ENST00000562836 STAB1Q9NY15 2570 aa4.87□□□□□ -1.63
CDH1-205ENST00000562836 Q6ZRN7 208 aaPredicted RBP4.86□□□□□ -1.63
CDH1-205ENST00000562836 UBE2DNLQ8IWF7 75 aa4.85□□□□□ -1.63
CDH1-205ENST00000562836 MAST4O15021 2626 aa4.84□□□□□ -1.63
CDH1-205ENST00000562836 LCE2AQ5TA79 106 aaPredicted RBP4.82□□□□□ -1.64
CDH1-205ENST00000562836 MEGF8Q7Z7M0 2845 aa4.82□□□□□ -1.64
CDH1-205ENST00000562836 LCE2CQ5TA81 110 aa4.81□□□□□ -1.64
CDH1-205ENST00000562836 COL6A5A8TX70 2615 aa4.8□□□□□ -1.64
CDH1-205ENST00000562836 CMYA5Q8N3K9 4069 aa4.8□□□□□ -1.64
CDH1-205ENST00000562836 KRTAP10-11P60412 298 aa4.8□□□□□ -1.64
CDH1-205ENST00000562836 NOTCH1P46531 2555 aa4.79□□□□□ -1.64
CDH1-205ENST00000562836 S4R3F8 94 aa4.79□□□□□ -1.64
CDH1-205ENST00000562836 KRTAP13-4Q3LI77 160 aa4.78□□□□□ -1.64
CDH1-205ENST00000562836 TENM3Q9P273 2699 aa4.75□□□□□ -1.65
CDH1-205ENST00000562836 NBEAL1Q6ZS30 2694 aa4.73□□□□□ -1.65
CDH1-205ENST00000562836 KRTAP12-2P59991 146 aa4.72□□□□□ -1.65
CDH1-205ENST00000562836 DNAH1Q9P2D7 4330 aa4.71□□□□□ -1.66
CDH1-205ENST00000562836 KRTAP13-1Q8IUC0 172 aa4.7□□□□□ -1.66
CDH1-205ENST00000562836 MGAM2Q2M2H8 2515 aa4.7□□□□□ -1.66
CDH1-205ENST00000562836 INE1O15225 51 aa4.7□□□□□ -1.66
CDH1-205ENST00000562836 KRTAP1-5Q9BYS1 174 aa4.68□□□□□ -1.66
CDH1-205ENST00000562836 DNAH3Q8TD57 4116 aa4.68□□□□□ -1.66
CDH1-205ENST00000562836 LYSTQ99698 3801 aa4.66□□□□□ -1.66
CDH1-205ENST00000562836 COL7A1Q02388 2944 aa4.65□□□□□ -1.66
CDH1-205ENST00000562836 KRTAP3-1Q9BYR8 98 aa4.65□□□□□ -1.67
CDH1-205ENST00000562836 HUWE1Q7Z6Z7 4374 aaKnown RBP4.63□□□□□ -1.67
CDH1-205ENST00000562836 KRTAP10-6P60371 365 aaPredicted RBP4.63□□□□□ -1.67
CDH1-205ENST00000562836 STAB2Q8WWQ8 2551 aa4.59□□□□□ -1.67
CDH1-205ENST00000562836 LCE2BO14633 110 aa4.58□□□□□ -1.68
CDH1-205ENST00000562836 KRTAP12-1P59990 96 aa4.58□□□□□ -1.68
CDH1-205ENST00000562836 DNHD1Q96M86 4753 aa4.55□□□□□ -1.68
CDH1-205ENST00000562836 DNAH10Q8IVF4 4471 aa4.55□□□□□ -1.68
CDH1-205ENST00000562836 DNAH7Q8WXX0 4024 aa4.55□□□□□ -1.68
CDH1-205ENST00000562836 DNAH9Q9NYC9 4486 aa4.55□□□□□ -1.68
CDH1-205ENST00000562836 TGP01266 2768 aa4.54□□□□□ -1.68
CDH1-205ENST00000562836 PRKDCP78527 4128 aaKnown RBP4.52□□□□□ -1.69
CDH1-205ENST00000562836 FRAS1Q86XX4 4008 aa4.51□□□□□ -1.69
CDH1-205ENST00000562836 PLECQ15149 4684 aaKnown RBP4.49□□□□□ -1.69
CDH1-205ENST00000562836 STARD9Q9P2P6 4700 aa4.47□□□□□ -1.69
CDH1-205ENST00000562836 DYNC2H1Q8NCM8 4307 aaKnown RBP4.45□□□□□ -1.7
CDH1-205ENST00000562836 KMT2AQ03164 3969 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms