RNA–Protein interactions for RNA: ENST00000556083.1

ACTN1-216, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 4,674 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-216ENST00000556083 SPEGQ15772 3267 aa6.26□□□□□ -1.41
ACTN1-216ENST00000556083 MUC3AQ02505 3323 aa6.25□□□□□ -1.41
ACTN1-216ENST00000556083 ASPMQ8IZT6 3477 aa6.25□□□□□ -1.41
ACTN1-216ENST00000556083 ZNF469Q96JG9 3925 aaPredicted RBP6.25□□□□□ -1.41
ACTN1-216ENST00000556083 BOD1L1Q8NFC6 3051 aa6.25□□□□□ -1.41
ACTN1-216ENST00000556083 NOTCH1P46531 2555 aa6.24□□□□□ -1.41
ACTN1-216ENST00000556083 SPATA8Q6RVD6 105 aa6.22□□□□□ -1.41
ACTN1-216ENST00000556083 ZZEF1O43149 2961 aa6.22□□□□□ -1.41
ACTN1-216ENST00000556083 A0A087X002 238 aa6.22□□□□□ -1.41
ACTN1-216ENST00000556083 HIVEP1P15822 2718 aa6.2□□□□□ -1.42
ACTN1-216ENST00000556083 Q6ZRN7 208 aaPredicted RBP6.19□□□□□ -1.42
ACTN1-216ENST00000556083 KMT2BQ9UMN6 2715 aaPredicted RBP6.17□□□□□ -1.42
ACTN1-216ENST00000556083 ADM2Q7Z4H4 148 aa6.17□□□□□ -1.42
ACTN1-216ENST00000556083 TACC2O95359 2948 aa6.16□□□□□ -1.42
ACTN1-216ENST00000556083 AKAP9Q99996 3911 aa6.15□□□□□ -1.42
ACTN1-216ENST00000556083 ASH1LQ9NR48 2969 aaKnown RBP6.14□□□□□ -1.43
ACTN1-216ENST00000556083 BSNQ9UPA5 3926 aa6.14□□□□□ -1.43
ACTN1-216ENST00000556083 PRAC1Q96KF2 57 aa6.14□□□□□ -1.43
ACTN1-216ENST00000556083 CYSTM1Q9H1C7 97 aa6.14□□□□□ -1.43
ACTN1-216ENST00000556083 KRTAP13-1Q8IUC0 172 aa6.13□□□□□ -1.43
ACTN1-216ENST00000556083 DMBT1Q9UGM3 2413 aaPredicted RBP6.13□□□□□ -1.43
ACTN1-216ENST00000556083 CSMD1Q96PZ7 3565 aa6.12□□□□□ -1.43
ACTN1-216ENST00000556083 APCP25054 2843 aa6.09□□□□□ -1.43
ACTN1-216ENST00000556083 NOTCH2NLQ7Z3S9 236 aa6.09□□□□□ -1.43
ACTN1-216ENST00000556083 UTP20O75691 2785 aaKnown RBP6.07□□□□□ -1.44
ACTN1-216ENST00000556083 NBEAL2Q6ZNJ1 2754 aa6.07□□□□□ -1.44
ACTN1-216ENST00000556083 CUBNO60494 3623 aa6.06□□□□□ -1.44
ACTN1-216ENST00000556083 TENM4Q6N022 2769 aa6.06□□□□□ -1.44
ACTN1-216ENST00000556083 A8MUU9 505 aa6.05□□□□□ -1.44
ACTN1-216ENST00000556083 DCHS1Q96JQ0 3298 aa6.05□□□□□ -1.44
ACTN1-216ENST00000556083 NSD1Q96L73 2696 aaPredicted RBP6.04□□□□□ -1.44
ACTN1-216ENST00000556083 NIPBLQ6KC79 2804 aaeCLIP6.04□□□□□ -1.44
ACTN1-216ENST00000556083 ADGRG4Q8IZF6 3080 aa6.03□□□□□ -1.44
ACTN1-216ENST00000556083 C20orf166-AS1Q96NR2 134 aa6.02□□□□□ -1.45
ACTN1-216ENST00000556083 KRTAP13-2Q52LG2 175 aa6.01□□□□□ -1.45
ACTN1-216ENST00000556083 CRYBG3Q68DQ2 2970 aa6□□□□□ -1.45
ACTN1-216ENST00000556083 LOC400499M0QZD8 3231 aa6□□□□□ -1.45
ACTN1-216ENST00000556083 PP632Q6XCG6 107 aa5.99□□□□□ -1.45
ACTN1-216ENST00000556083 CSMD3Q7Z407 3707 aa5.98□□□□□ -1.45
ACTN1-216ENST00000556083 KRTAP25-1Q3LHN0 102 aa5.98□□□□□ -1.45
ACTN1-216ENST00000556083 TNP1P09430 55 aa5.98□□□□□ -1.45
ACTN1-216ENST00000556083 CELSR2Q9HCU4 2923 aa5.97□□□□□ -1.45
ACTN1-216ENST00000556083 KRTAP7-1Q8IUC3 87 aa5.97□□□□□ -1.45
ACTN1-216ENST00000556083 VPS13CQ709C8 3753 aa5.95□□□□□ -1.46
ACTN1-216ENST00000556083 A6NN06 94 aa5.95□□□□□ -1.46
ACTN1-216ENST00000556083 KRTAP11-1Q8IUC1 163 aa5.94□□□□□ -1.46
ACTN1-216ENST00000556083 STAB2Q8WWQ8 2551 aa5.92□□□□□ -1.46
ACTN1-216ENST00000556083 LRBAP50851 2863 aa5.91□□□□□ -1.46
ACTN1-216ENST00000556083 CSMD2Q7Z408 3487 aa5.89□□□□□ -1.47
ACTN1-216ENST00000556083 ZANQ9Y493 2812 aa5.89□□□□□ -1.47
ACTN1-216ENST00000556083 TPRXLQ17RH7 258 aa5.84□□□□□ -1.47
ACTN1-216ENST00000556083 NDUFAF8A1L188 74 aa5.81□□□□□ -1.48
ACTN1-216ENST00000556083 A8MU10 97 aa5.79□□□□□ -1.48
ACTN1-216ENST00000556083 MXRA5Q9NR99 2828 aa5.77□□□□□ -1.49
ACTN1-216ENST00000556083 KRTAP1-4P0C5Y4 121 aa5.77□□□□□ -1.49
ACTN1-216ENST00000556083 XP32Q5T750 250 aa5.75□□□□□ -1.49
ACTN1-216ENST00000556083 DCHS2Q6V1P9 2916 aa5.75□□□□□ -1.49
ACTN1-216ENST00000556083 SVEP1Q4LDE5 3571 aa5.75□□□□□ -1.49
ACTN1-216ENST00000556083 PRO2289Q9P1D8 64 aa5.74□□□□□ -1.49
ACTN1-216ENST00000556083 NF1P21359 2839 aa5.73□□□□□ -1.49
ACTN1-216ENST00000556083 OTOGQ6ZRI0 2925 aa5.7□□□□□ -1.5
ACTN1-216ENST00000556083 FBN2P35556 2912 aa5.69□□□□□ -1.5
ACTN1-216ENST00000556083 HRNRQ86YZ3 2850 aaPredicted RBP5.69□□□□□ -1.5
ACTN1-216ENST00000556083 PDZD2O15018 2839 aa5.65□□□□□ -1.51
ACTN1-216ENST00000556083 KRTAP10-8P60410 259 aa5.61□□□□□ -1.51
ACTN1-216ENST00000556083 KRTAP13-3Q3SY46 172 aa5.61□□□□□ -1.51
ACTN1-216ENST00000556083 C10orf95Q9H7T3 257 aa5.6□□□□□ -1.51
ACTN1-216ENST00000556083 P0C880 135 aa5.57□□□□□ -1.52
ACTN1-216ENST00000556083 CELSR1Q9NYQ6 3014 aa5.57□□□□□ -1.52
ACTN1-216ENST00000556083 PKD1L1Q8TDX9 2849 aa5.53□□□□□ -1.52
ACTN1-216ENST00000556083 KRTAP10-10P60014 251 aa5.51□□□□□ -1.53
ACTN1-216ENST00000556083 H0YAA0 97 aa5.51□□□□□ -1.53
ACTN1-216ENST00000556083 TGP01266 2768 aa5.51□□□□□ -1.53
ACTN1-216ENST00000556083 ANK2Q01484 3957 aa5.5□□□□□ -1.53
ACTN1-216ENST00000556083 FBN1P35555 2871 aaKnown RBP5.49□□□□□ -1.53
ACTN1-216ENST00000556083 TENM3Q9P273 2699 aa5.48□□□□□ -1.53
ACTN1-216ENST00000556083 TENM1Q9UKZ4 2725 aa5.48□□□□□ -1.53
ACTN1-216ENST00000556083 LYSTQ99698 3801 aa5.48□□□□□ -1.53
ACTN1-216ENST00000556083 TENM2Q9NT68 2774 aa5.45□□□□□ -1.54
ACTN1-216ENST00000556083 A0A1B0GVY2 172 aa5.45□□□□□ -1.54
ACTN1-216ENST00000556083 FBN3Q75N90 2809 aa5.44□□□□□ -1.54
ACTN1-216ENST00000556083 TRRAPQ9Y4A5 3859 aa5.42□□□□□ -1.54
ACTN1-216ENST00000556083 VWFP04275 2813 aa5.34□□□□□ -1.55
ACTN1-216ENST00000556083 KRTAP13-4Q3LI77 160 aa5.32□□□□□ -1.56
ACTN1-216ENST00000556083 SRRM2Q9UQ35 2752 aaKnown RBP5.22□□□□□ -1.57
ACTN1-216ENST00000556083 ANK3Q12955 4377 aaKnown RBP5.17□□□□□ -1.58
ACTN1-216ENST00000556083 KRTAP12-1P59990 96 aa5.16□□□□□ -1.58
ACTN1-216ENST00000556083 DNAH3Q8TD57 4116 aa5.13□□□□□ -1.59
ACTN1-216ENST00000556083 KRTAP12-2P59991 146 aa5.13□□□□□ -1.59
ACTN1-216ENST00000556083 KRTAP23-1A1A580 65 aa5.12□□□□□ -1.59
ACTN1-216ENST00000556083 KRTAP3-1Q9BYR8 98 aa5.04□□□□□ -1.6
ACTN1-216ENST00000556083 MEGF8Q7Z7M0 2845 aa5.04□□□□□ -1.6
ACTN1-216ENST00000556083 COL7A1Q02388 2944 aa5.02□□□□□ -1.61
ACTN1-216ENST00000556083 CMYA5Q8N3K9 4069 aa5.01□□□□□ -1.61
ACTN1-216ENST00000556083 KRTAP15-1Q3LI76 137 aa5.01□□□□□ -1.61
ACTN1-216ENST00000556083 DNHD1Q96M86 4753 aa4.99□□□□□ -1.61
ACTN1-216ENST00000556083 KRTAP10-6P60371 365 aaPredicted RBP4.98□□□□□ -1.61
ACTN1-216ENST00000556083 INE1O15225 51 aa4.97□□□□□ -1.61
ACTN1-216ENST00000556083 DNAH6Q9C0G6 4158 aa4.96□□□□□ -1.62
ACTN1-216ENST00000556083 DNAH7Q8WXX0 4024 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 114 ms