RNA–Protein interactions for RNA: ENST00000554873.5

SYNE3-203, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 5 BASIC

Gene SYNE3, Length 2,826 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-203ENST00000554873 A0A1B0GVX0 72 aa9.38□□□□□ -0.91
SYNE3-203ENST00000554873 UQCR11O14957 56 aa9.37□□□□□ -0.91
SYNE3-203ENST00000554873 UBE2DNLQ8IWF7 75 aa9.36□□□□□ -0.91
SYNE3-203ENST00000554873 MGAM2Q2M2H8 2515 aa9.36□□□□□ -0.91
SYNE3-203ENST00000554873 C14orf177Q52M58 125 aa9.36□□□□□ -0.91
SYNE3-203ENST00000554873 TENM2Q9NT68 2774 aa9.35□□□□□ -0.91
SYNE3-203ENST00000554873 COL7A1Q02388 2944 aa9.35□□□□□ -0.91
SYNE3-203ENST00000554873 APLNQ9ULZ1 77 aa9.33□□□□□ -0.92
SYNE3-203ENST00000554873 PANO1I0J062 215 aa9.32□□□□□ -0.92
SYNE3-203ENST00000554873 CDK2AP2O75956 126 aa9.32□□□□□ -0.92
SYNE3-203ENST00000554873 DMAC1Q96GE9 116 aa9.32□□□□□ -0.92
SYNE3-203ENST00000554873 ALMS1Q8TCU4 4167 aa9.31□□□□□ -0.92
SYNE3-203ENST00000554873 DNAH7Q8WXX0 4024 aa9.3□□□□□ -0.92
SYNE3-203ENST00000554873 KRTAP13-1Q8IUC0 172 aa9.3□□□□□ -0.92
SYNE3-203ENST00000554873 KRTAP13-3Q3SY46 172 aa9.28□□□□□ -0.92
SYNE3-203ENST00000554873 Q5W150 140 aa9.27□□□□□ -0.92
SYNE3-203ENST00000554873 C1orf134Q5TEV5 83 aa9.26□□□□□ -0.93
SYNE3-203ENST00000554873 NOTCH2NLQ7Z3S9 236 aa9.26□□□□□ -0.93
SYNE3-203ENST00000554873 ZNF861PO60384 105 aa9.25□□□□□ -0.93
SYNE3-203ENST00000554873 IGLV9-49A0A0B4J1Y8 123 aa9.25□□□□□ -0.93
SYNE3-203ENST00000554873 DYNC2H1Q8NCM8 4307 aaKnown RBP9.23□□□□□ -0.93
SYNE3-203ENST00000554873 NBDYA0A0U1RRE5 68 aa9.22□□□□□ -0.93
SYNE3-203ENST00000554873 Q6ZRN7 208 aaPredicted RBP9.21□□□□□ -0.93
SYNE3-203ENST00000554873 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.21□□□□□ -0.93
SYNE3-203ENST00000554873 PLECQ15149 4684 aaKnown RBP9.21□□□□□ -0.94
SYNE3-203ENST00000554873 ZNF706Q9Y5V0 76 aaPredicted RBP9.21□□□□□ -0.94
SYNE3-203ENST00000554873 SPACA4Q8TDM5 124 aa9.18□□□□□ -0.94
SYNE3-203ENST00000554873 LINC00483Q53H64 154 aa9.16□□□□□ -0.94
SYNE3-203ENST00000554873 ROMO1P60602 79 aa9.16□□□□□ -0.94
SYNE3-203ENST00000554873 WWC2-AS2Q96NR7 200 aa9.13□□□□□ -0.95
SYNE3-203ENST00000554873 ANAPC11Q9NYG5 84 aa9.13□□□□□ -0.95
SYNE3-203ENST00000554873 KRTAP25-1Q3LHN0 102 aa9.11□□□□□ -0.95
SYNE3-203ENST00000554873 IGLV7-43P04211 117 aa9.09□□□□□ -0.95
SYNE3-203ENST00000554873 PSORS1C2Q9UIG4 136 aa9.09□□□□□ -0.95
SYNE3-203ENST00000554873 A0A087WTM6 91 aa9.07□□□□□ -0.96
SYNE3-203ENST00000554873 HECTD4Q9Y4D8 3996 aa9.07□□□□□ -0.96
SYNE3-203ENST00000554873 DNAH8Q96JB1 4490 aa9.07□□□□□ -0.96
SYNE3-203ENST00000554873 IGLV5-52A0A0A0MRZ9 124 aa9.07□□□□□ -0.96
SYNE3-203ENST00000554873 FRAS1Q86XX4 4008 aa9.06□□□□□ -0.96
SYNE3-203ENST00000554873 NUPR2A6NF83 97 aa9.05□□□□□ -0.96
SYNE3-203ENST00000554873 IGKV2-30P06310 120 aa9.04□□□□□ -0.96
SYNE3-203ENST00000554873 VPS13DQ5THJ4 4388 aa9.04□□□□□ -0.96
SYNE3-203ENST00000554873 FAM229AH3BQW9 127 aa9.04□□□□□ -0.96
SYNE3-203ENST00000554873 SPINK6Q6UWN8 80 aa9.03□□□□□ -0.96
SYNE3-203ENST00000554873 STARD9Q9P2P6 4700 aa9.01□□□□□ -0.97
SYNE3-203ENST00000554873 A8MUU9 505 aa9□□□□□ -0.97
SYNE3-203ENST00000554873 KMT2AQ03164 3969 aa8.96□□□□□ -0.98
SYNE3-203ENST00000554873 DNAH17Q9UFH2 4485 aa8.96□□□□□ -0.98
SYNE3-203ENST00000554873 DNAH2Q9P225 4427 aa8.94□□□□□ -0.98
SYNE3-203ENST00000554873 LINC00304Q8N9R0 145 aa8.94□□□□□ -0.98
SYNE3-203ENST00000554873 CIRBP-AS1Q8TBR5 109 aa8.92□□□□□ -0.98
SYNE3-203ENST00000554873 PRKDCP78527 4128 aaKnown RBP8.91□□□□□ -0.98
SYNE3-203ENST00000554873 LY6G6CO95867 125 aa8.9□□□□□ -0.98
SYNE3-203ENST00000554873 TGP01266 2768 aa8.89□□□□□ -0.99
SYNE3-203ENST00000554873 P0C880 135 aa8.89□□□□□ -0.99
SYNE3-203ENST00000554873 FBN3Q75N90 2809 aa8.88□□□□□ -0.99
SYNE3-203ENST00000554873 IGKV2D-30A0A075B6S6 120 aa8.87□□□□□ -0.99
SYNE3-203ENST00000554873 H0YAA0 97 aa8.87□□□□□ -0.99
SYNE3-203ENST00000554873 MEGF8Q7Z7M0 2845 aa8.86□□□□□ -0.99
SYNE3-203ENST00000554873 Q6ZSA8 131 aa8.85□□□□□ -0.99
SYNE3-203ENST00000554873 SSBP3-AS1Q7Z2R9 100 aa8.83□□□□□ -1
SYNE3-203ENST00000554873 SPINK1P00995 79 aa8.82□□□□□ -1
SYNE3-203ENST00000554873 KRTAP21-3Q3LHN1 58 aa8.81□□□□□ -1
SYNE3-203ENST00000554873 DNAH6Q9C0G6 4158 aa8.78□□□□□ -1
SYNE3-203ENST00000554873 DNAH11Q96DT5 4516 aa8.78□□□□□ -1
SYNE3-203ENST00000554873 KRTAP16-1A8MUX0 517 aa8.74□□□□□ -1.01
SYNE3-203ENST00000554873 DNHD1Q96M86 4753 aa8.73□□□□□ -1.01
SYNE3-203ENST00000554873 KRTAP13-2Q52LG2 175 aa8.73□□□□□ -1.01
SYNE3-203ENST00000554873 DNAH5Q8TE73 4624 aa8.72□□□□□ -1.01
SYNE3-203ENST00000554873 A0A1B0GU33 70 aa8.72□□□□□ -1.01
SYNE3-203ENST00000554873 CRIPTQ9P021 101 aa8.72□□□□□ -1.01
SYNE3-203ENST00000554873 KRTAP10-2P60368 255 aa8.71□□□□□ -1.02
SYNE3-203ENST00000554873 Q8N1X5 172 aa8.67□□□□□ -1.02
SYNE3-203ENST00000554873 K7ERS5 55 aa8.67□□□□□ -1.02
SYNE3-203ENST00000554873 H1FX-AS1Q4G0G2 97 aa8.67□□□□□ -1.02
SYNE3-203ENST00000554873 TYMSOSQ8TAI1 123 aa8.67□□□□□ -1.02
SYNE3-203ENST00000554873 LRP1BQ9NZR2 4599 aa8.65□□□□□ -1.02
SYNE3-203ENST00000554873 FLG2Q5D862 2391 aaPredicted RBP8.62□□□□□ -1.03
SYNE3-203ENST00000554873 KRTAP10-1P60331 282 aa8.6□□□□□ -1.03
SYNE3-203ENST00000554873 SPINT4Q6UDR6 99 aa8.6□□□□□ -1.03
SYNE3-203ENST00000554873 KRTAP1-4P0C5Y4 121 aa8.59□□□□□ -1.03
SYNE3-203ENST00000554873 PKD1P98161 4303 aa8.55□□□□□ -1.04
SYNE3-203ENST00000554873 VPS13BQ7Z7G8 4022 aa8.54□□□□□ -1.04
SYNE3-203ENST00000554873 NDUFAF8A1L188 74 aa8.54□□□□□ -1.04
SYNE3-203ENST00000554873 C20orf166-AS1Q96NR2 134 aa8.54□□□□□ -1.04
SYNE3-203ENST00000554873 FAT2Q9NYQ8 4349 aa8.48□□□□□ -1.05
SYNE3-203ENST00000554873 KRTAP15-1Q3LI76 137 aa8.48□□□□□ -1.05
SYNE3-203ENST00000554873 HYDINQ4G0P3 5121 aa8.46□□□□□ -1.06
SYNE3-203ENST00000554873 A0A0A0MQY5 61 aa8.45□□□□□ -1.06
SYNE3-203ENST00000554873 TPRXLQ17RH7 258 aa8.45□□□□□ -1.06
SYNE3-203ENST00000554873 COX6B2Q6YFQ2 88 aa8.44□□□□□ -1.06
SYNE3-203ENST00000554873 KRTAP3-1Q9BYR8 98 aa8.37□□□□□ -1.07
SYNE3-203ENST00000554873 RPL37P61927 97 aaKnown RBP8.37□□□□□ -1.07
SYNE3-203ENST00000554873 C10orf95Q9H7T3 257 aa8.3□□□□□ -1.08
SYNE3-203ENST00000554873 RPS29P62273 56 aaKnown RBP8.3□□□□□ -1.08
SYNE3-203ENST00000554873 PKHD1P08F94 4074 aa8.28□□□□□ -1.08
SYNE3-203ENST00000554873 SACSQ9NZJ4 4579 aa8.27□□□□□ -1.08
SYNE3-203ENST00000554873 C9orf92A6NGG3 77 aa8.26□□□□□ -1.09
SYNE3-203ENST00000554873 SMR3BP02814 79 aaPredicted RBP8.22□□□□□ -1.09
SYNE3-203ENST00000554873 A0A0D9SG42 100 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms