RNA–Protein interactions for RNA: ENST00000553612.5

GTF2A1-203, Transcript of general transcription factor IIA subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GTF2A1, Length 6,306 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF2A1-203ENST00000553612 KRTAP10-11P60412 298 aa5.11□□□□□ -1.59
GTF2A1-203ENST00000553612 TPRXLQ17RH7 258 aa5.11□□□□□ -1.59
GTF2A1-203ENST00000553612 COX6B2Q6YFQ2 88 aa5.1□□□□□ -1.59
GTF2A1-203ENST00000553612 CELSR2Q9HCU4 2923 aa5.09□□□□□ -1.59
GTF2A1-203ENST00000553612 ITPR3Q14573 2671 aa5.09□□□□□ -1.59
GTF2A1-203ENST00000553612 HECTD1Q9ULT8 2610 aa5.09□□□□□ -1.6
GTF2A1-203ENST00000553612 SMR3BP02814 79 aaPredicted RBP5.08□□□□□ -1.6
GTF2A1-203ENST00000553612 KRTAP15-1Q3LI76 137 aa5.07□□□□□ -1.6
GTF2A1-203ENST00000553612 CELSR1Q9NYQ6 3014 aa5.06□□□□□ -1.6
GTF2A1-203ENST00000553612 CSMD2Q7Z408 3487 aa5.06□□□□□ -1.6
GTF2A1-203ENST00000553612 COL6A5A8TX70 2615 aa5.05□□□□□ -1.6
GTF2A1-203ENST00000553612 KRTAP7-1Q8IUC3 87 aa5.05□□□□□ -1.6
GTF2A1-203ENST00000553612 ZNF292O60281 2723 aa5.04□□□□□ -1.6
GTF2A1-203ENST00000553612 HIVEP1P15822 2718 aa5.04□□□□□ -1.6
GTF2A1-203ENST00000553612 KRTAP24-1Q3LI83 254 aa5.03□□□□□ -1.6
GTF2A1-203ENST00000553612 CFAP46Q8IYW2 2715 aa5.03□□□□□ -1.6
GTF2A1-203ENST00000553612 ATRQ13535 2644 aa5.03□□□□□ -1.6
GTF2A1-203ENST00000553612 TEP1Q99973 2627 aaKnown RBP5.03□□□□□ -1.6
GTF2A1-203ENST00000553612 MGAM2Q2M2H8 2515 aa5.03□□□□□ -1.6
GTF2A1-203ENST00000553612 NSD1Q96L73 2696 aaPredicted RBP5.01□□□□□ -1.61
GTF2A1-203ENST00000553612 SPRR1BP22528 89 aa5.01□□□□□ -1.61
GTF2A1-203ENST00000553612 WWC2-AS2Q96NR7 200 aa5□□□□□ -1.61
GTF2A1-203ENST00000553612 STAB2Q8WWQ8 2551 aa5□□□□□ -1.61
GTF2A1-203ENST00000553612 FLNAP21333 2647 aaKnown RBP5□□□□□ -1.61
GTF2A1-203ENST00000553612 S4R3F8 94 aa5□□□□□ -1.61
GTF2A1-203ENST00000553612 SRRM2Q9UQ35 2752 aaKnown RBP4.98□□□□□ -1.61
GTF2A1-203ENST00000553612 KRTAP1-5Q9BYS1 174 aa4.97□□□□□ -1.61
GTF2A1-203ENST00000553612 FBN2P35556 2912 aa4.96□□□□□ -1.61
GTF2A1-203ENST00000553612 R4GN34 69 aa4.96□□□□□ -1.61
GTF2A1-203ENST00000553612 KRTAP10-8P60410 259 aa4.96□□□□□ -1.62
GTF2A1-203ENST00000553612 DCHS2Q6V1P9 2916 aa4.95□□□□□ -1.62
GTF2A1-203ENST00000553612 NF1P21359 2839 aa4.93□□□□□ -1.62
GTF2A1-203ENST00000553612 STAB1Q9NY15 2570 aa4.93□□□□□ -1.62
GTF2A1-203ENST00000553612 M0QZ58 72 aa4.92□□□□□ -1.62
GTF2A1-203ENST00000553612 NBPF19A0A087WUL8 3843 aa4.88□□□□□ -1.63
GTF2A1-203ENST00000553612 SETXQ7Z333 2677 aaKnown RBP4.85□□□□□ -1.63
GTF2A1-203ENST00000553612 FLNBO75369 2602 aaKnown RBP4.85□□□□□ -1.63
GTF2A1-203ENST00000553612 ZANQ9Y493 2812 aa4.83□□□□□ -1.64
GTF2A1-203ENST00000553612 VPS13CQ709C8 3753 aa4.81□□□□□ -1.64
GTF2A1-203ENST00000553612 HRNRQ86YZ3 2850 aaPredicted RBP4.79□□□□□ -1.64
GTF2A1-203ENST00000553612 MAST4O15021 2626 aa4.78□□□□□ -1.64
GTF2A1-203ENST00000553612 TGP01266 2768 aa4.77□□□□□ -1.65
GTF2A1-203ENST00000553612 PDZD2O15018 2839 aa4.77□□□□□ -1.65
GTF2A1-203ENST00000553612 CSMD3Q7Z407 3707 aa4.76□□□□□ -1.65
GTF2A1-203ENST00000553612 KRTAP1-3Q8IUG1 177 aa4.75□□□□□ -1.65
GTF2A1-203ENST00000553612 KRTAP12-2P59991 146 aa4.74□□□□□ -1.65
GTF2A1-203ENST00000553612 KRTAP13-3Q3SY46 172 aa4.74□□□□□ -1.65
GTF2A1-203ENST00000553612 KRTAP1-1Q07627 177 aa4.7□□□□□ -1.66
GTF2A1-203ENST00000553612 MXRA5Q9NR99 2828 aa4.7□□□□□ -1.66
GTF2A1-203ENST00000553612 KRTAP13-2Q52LG2 175 aa4.68□□□□□ -1.66
GTF2A1-203ENST00000553612 KMT2BQ9UMN6 2715 aaPredicted RBP4.68□□□□□ -1.66
GTF2A1-203ENST00000553612 KRTAP10-2P60368 255 aa4.67□□□□□ -1.66
GTF2A1-203ENST00000553612 PRO2289Q9P1D8 64 aa4.67□□□□□ -1.66
GTF2A1-203ENST00000553612 NIPBLQ6KC79 2804 aaeCLIP4.66□□□□□ -1.66
GTF2A1-203ENST00000553612 KRTAP13-1Q8IUC0 172 aa4.65□□□□□ -1.66
GTF2A1-203ENST00000553612 FBN1P35555 2871 aaKnown RBP4.63□□□□□ -1.67
GTF2A1-203ENST00000553612 PP632Q6XCG6 107 aa4.63□□□□□ -1.67
GTF2A1-203ENST00000553612 KRTAP13-4Q3LI77 160 aa4.62□□□□□ -1.67
GTF2A1-203ENST00000553612 KRTAP10-1P60331 282 aa4.61□□□□□ -1.67
GTF2A1-203ENST00000553612 COL7A1Q02388 2944 aa4.6□□□□□ -1.67
GTF2A1-203ENST00000553612 IGSF10Q6WRI0 2623 aa4.59□□□□□ -1.67
GTF2A1-203ENST00000553612 Q6ZRN7 208 aaPredicted RBP4.58□□□□□ -1.68
GTF2A1-203ENST00000553612 ITPR2Q14571 2701 aa4.56□□□□□ -1.68
GTF2A1-203ENST00000553612 FLNCQ14315 2725 aa4.55□□□□□ -1.68
GTF2A1-203ENST00000553612 KRTAP12-1P59990 96 aa4.53□□□□□ -1.68
GTF2A1-203ENST00000553612 PKD1L1Q8TDX9 2849 aa4.5□□□□□ -1.69
GTF2A1-203ENST00000553612 OTOGQ6ZRI0 2925 aa4.5□□□□□ -1.69
GTF2A1-203ENST00000553612 M0R2T5 61 aa4.49□□□□□ -1.69
GTF2A1-203ENST00000553612 XP32Q5T750 250 aa4.48□□□□□ -1.69
GTF2A1-203ENST00000553612 INE1O15225 51 aa4.47□□□□□ -1.69
GTF2A1-203ENST00000553612 TNP1P09430 55 aa4.46□□□□□ -1.7
GTF2A1-203ENST00000553612 KRTAP3-1Q9BYR8 98 aa4.45□□□□□ -1.7
GTF2A1-203ENST00000553612 AKAP9Q99996 3911 aa4.45□□□□□ -1.7
GTF2A1-203ENST00000553612 BSNQ9UPA5 3926 aa4.44□□□□□ -1.7
GTF2A1-203ENST00000553612 ALMS1Q8TCU4 4167 aa4.44□□□□□ -1.7
GTF2A1-203ENST00000553612 TENM3Q9P273 2699 aa4.43□□□□□ -1.7
GTF2A1-203ENST00000553612 KRTAP10-6P60371 365 aaPredicted RBP4.41□□□□□ -1.7
GTF2A1-203ENST00000553612 KRTAP23-1A1A580 65 aa4.4□□□□□ -1.71
GTF2A1-203ENST00000553612 TENM2Q9NT68 2774 aa4.39□□□□□ -1.71
GTF2A1-203ENST00000553612 VWFP04275 2813 aa4.37□□□□□ -1.71
GTF2A1-203ENST00000553612 A0A1B0GVY2 172 aa4.36□□□□□ -1.71
GTF2A1-203ENST00000553612 TRRAPQ9Y4A5 3859 aa4.36□□□□□ -1.71
GTF2A1-203ENST00000553612 TENM4Q6N022 2769 aa4.31□□□□□ -1.72
GTF2A1-203ENST00000553612 KRTAP1-4P0C5Y4 121 aa4.31□□□□□ -1.72
GTF2A1-203ENST00000553612 TENM1Q9UKZ4 2725 aa4.3□□□□□ -1.72
GTF2A1-203ENST00000553612 MEGF8Q7Z7M0 2845 aa4.3□□□□□ -1.72
GTF2A1-203ENST00000553612 FBN3Q75N90 2809 aa4.3□□□□□ -1.72
GTF2A1-203ENST00000553612 Q5VSD8 79 aa4.27□□□□□ -1.73
GTF2A1-203ENST00000553612 KRTAP3-2Q9BYR7 98 aa4.25□□□□□ -1.73
GTF2A1-203ENST00000553612 RPS29P62273 56 aaKnown RBP4.15□□□□□ -1.74
GTF2A1-203ENST00000553612 KRTAP3-3Q9BYR6 98 aa4.12□□□□□ -1.75
GTF2A1-203ENST00000553612 DNAH10Q8IVF4 4471 aa4.12□□□□□ -1.75
GTF2A1-203ENST00000553612 ZNF469Q96JG9 3925 aaPredicted RBP4.12□□□□□ -1.75
GTF2A1-203ENST00000553612 FRAS1Q86XX4 4008 aa4.08□□□□□ -1.76
GTF2A1-203ENST00000553612 ANK3Q12955 4377 aaKnown RBP4□□□□□ -1.77
GTF2A1-203ENST00000553612 LORP23490 312 aaPredicted RBP3.95□□□□□ -1.78
GTF2A1-203ENST00000553612 LYSTQ99698 3801 aa3.91□□□□□ -1.78
GTF2A1-203ENST00000553612 DNAH8Q96JB1 4490 aa3.89□□□□□ -1.79
GTF2A1-203ENST00000553612 KRTAP10-10P60014 251 aa3.88□□□□□ -1.79
GTF2A1-203ENST00000553612 HUWE1Q7Z6Z7 4374 aaKnown RBP3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms