RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 C5orf47Q569G3 176 aa15.26■□□□□ 0.03
CCDC88C-205ENST00000553403 RYR1P21817 5038 aa15.25■□□□□ 0.03
CCDC88C-205ENST00000553403 H7BZZ5 65 aa15.25■□□□□ 0.03
CCDC88C-205ENST00000553403 TYMSOSQ8TAI1 123 aa15.25■□□□□ 0.03
CCDC88C-205ENST00000553403 IGHV6-1A0A0B4J1U7 121 aa15.24■□□□□ 0.03
CCDC88C-205ENST00000553403 KRTAP10-4P60372 401 aaPredicted RBP15.24■□□□□ 0.03
CCDC88C-205ENST00000553403 APOBP04114 4563 aaKnown RBP15.21■□□□□ 0.03
CCDC88C-205ENST00000553403 LIMD2Q9BT23 127 aa15.21■□□□□ 0.03
CCDC88C-205ENST00000553403 HSPG2P98160 4391 aa15.19■□□□□ 0.02
CCDC88C-205ENST00000553403 C4orf48Q5BLP8 95 aa15.18■□□□□ 0.02
CCDC88C-205ENST00000553403 C1orf195Q5TG92 126 aa15.15■□□□□ 0.02
CCDC88C-205ENST00000553403 SPINK1P00995 79 aa15.13■□□□□ 0.01
CCDC88C-205ENST00000553403 Q8N1X5 172 aa15.13■□□□□ 0.01
CCDC88C-205ENST00000553403 PRR26Q8N8Z3 221 aa15.12■□□□□ 0.01
CCDC88C-205ENST00000553403 ZCCHC13Q8WW36 166 aaKnown RBP15.12■□□□□ 0.01
CCDC88C-205ENST00000553403 KRTAP4-5Q9BYR2 181 aa15.12■□□□□ 0.01
CCDC88C-205ENST00000553403 PCLOQ9Y6V0 5065 aa15.12■□□□□ 0.01
CCDC88C-205ENST00000553403 C8orf87E5RJ46 101 aa15.12■□□□□ 0.01
CCDC88C-205ENST00000553403 MP68P56378 58 aa15.12■□□□□ 0.01
CCDC88C-205ENST00000553403 MRPL34Q9BQ48 92 aaKnown RBP15.11■□□□□ 0.01
CCDC88C-205ENST00000553403 TP53AIP1Q9HCN2 124 aa15.11■□□□□ 0.01
CCDC88C-205ENST00000553403 FAM236DA0A1B0GTK5 79 aa15.09■□□□□ 0.01
CCDC88C-205ENST00000553403 FAM236CP0DP71 79 aa15.09■□□□□ 0.01
CCDC88C-205ENST00000553403 NOTCH2NLQ7Z3S9 236 aa15.09■□□□□ 0.01
CCDC88C-205ENST00000553403 H3BPC8 53 aa15.08■□□□□ 0
CCDC88C-205ENST00000553403 RPS29P62273 56 aaKnown RBP15.07■□□□□ 0
CCDC88C-205ENST00000553403 SPAG11AQ6PDA7 123 aa15.07■□□□□ 0
CCDC88C-205ENST00000553403 LINC00304Q8N9R0 145 aa15.06■□□□□ 0
CCDC88C-205ENST00000553403 H0Y9P7 68 aa15.06■□□□□ 0
CCDC88C-205ENST00000553403 ATP5EP56381 51 aaPredicted RBP15.02□□□□□ -0.01
CCDC88C-205ENST00000553403 ABCA13Q86UQ4 5058 aa15.01□□□□□ -0.01
CCDC88C-205ENST00000553403 RPS28P62857 69 aaKnown RBP15.01□□□□□ -0.01
CCDC88C-205ENST00000553403 TRAV22A0A0B4J277 110 aa15□□□□□ -0.01
CCDC88C-205ENST00000553403 FAM229AH3BQW9 127 aa15□□□□□ -0.01
CCDC88C-205ENST00000553403 LINC00208Q96KT6 92 aa14.99□□□□□ -0.01
CCDC88C-205ENST00000553403 NDUFS5O43920 106 aa14.98□□□□□ -0.01
CCDC88C-205ENST00000553403 FAT1Q14517 4588 aa14.98□□□□□ -0.01
CCDC88C-205ENST00000553403 LINC00313P59037 77 aa14.97□□□□□ -0.01
CCDC88C-205ENST00000553403 Q5VSD8 79 aa14.91□□□□□ -0.02
CCDC88C-205ENST00000553403 C1orf64Q8NEQ6 169 aa14.91□□□□□ -0.02
CCDC88C-205ENST00000553403 PKHD1L1Q86WI1 4243 aa14.88□□□□□ -0.03
CCDC88C-205ENST00000553403 SERP1Q9Y6X1 66 aa14.87□□□□□ -0.03
CCDC88C-205ENST00000553403 Q8N9P0 234 aaPredicted RBP14.83□□□□□ -0.04
CCDC88C-205ENST00000553403 KRTAP16-1A8MUX0 517 aa14.81□□□□□ -0.04
CCDC88C-205ENST00000553403 OXTP01178 125 aa14.76□□□□□ -0.05
CCDC88C-205ENST00000553403 KRTAP13-3Q3SY46 172 aa14.76□□□□□ -0.05
CCDC88C-205ENST00000553403 SPANXA2-OT1Q8N9U9 137 aa14.74□□□□□ -0.05
CCDC88C-205ENST00000553403 Q5W150 140 aa14.74□□□□□ -0.05
CCDC88C-205ENST00000553403 CYP4F30PQ9H0H9 118 aa14.72□□□□□ -0.05
CCDC88C-205ENST00000553403 LOC101927531A0A1B0GV80 90 aa14.69□□□□□ -0.06
CCDC88C-205ENST00000553403 KRTAP10-8P60410 259 aa14.68□□□□□ -0.06
CCDC88C-205ENST00000553403 PCOTHQ58A44 107 aa14.61□□□□□ -0.07
CCDC88C-205ENST00000553403 IGLV7-46A0A075B6I9 117 aa14.59□□□□□ -0.07
CCDC88C-205ENST00000553403 PRR4Q16378 134 aa14.58□□□□□ -0.07
CCDC88C-205ENST00000553403 FLG2Q5D862 2391 aaPredicted RBP14.57□□□□□ -0.08
CCDC88C-205ENST00000553403 J3QL48 77 aa14.55□□□□□ -0.08
CCDC88C-205ENST00000553403 DMBT1Q9UGM3 2413 aaPredicted RBP14.54□□□□□ -0.08
CCDC88C-205ENST00000553403 SMIM26A0A096LP01 95 aa14.53□□□□□ -0.08
CCDC88C-205ENST00000553403 MYCBP2O75592 4640 aa14.52□□□□□ -0.09
CCDC88C-205ENST00000553403 RETNLBQ9BQ08 111 aa14.52□□□□□ -0.09
CCDC88C-205ENST00000553403 IGKV2-30P06310 120 aa14.49□□□□□ -0.09
CCDC88C-205ENST00000553403 HERC1Q15751 4861 aa14.45□□□□□ -0.1
CCDC88C-205ENST00000553403 TNXBP22105 4242 aa14.45□□□□□ -0.1
CCDC88C-205ENST00000553403 C9orf92A6NGG3 77 aa14.44□□□□□ -0.1
CCDC88C-205ENST00000553403 C20orf166-AS1Q96NR2 134 aa14.44□□□□□ -0.1
CCDC88C-205ENST00000553403 A8MUU9 505 aa14.42□□□□□ -0.1
CCDC88C-205ENST00000553403 FP248Q71RG6 208 aaPredicted RBP14.38□□□□□ -0.11
CCDC88C-205ENST00000553403 LRP1Q07954 4544 aaKnown RBP14.37□□□□□ -0.11
CCDC88C-205ENST00000553403 FAT3Q8TDW7 4589 aa14.37□□□□□ -0.11
CCDC88C-205ENST00000553403 MT1HL1P0DM35 61 aa14.36□□□□□ -0.11
CCDC88C-205ENST00000553403 HRES1P13985 223 aa14.33□□□□□ -0.11
CCDC88C-205ENST00000553403 IGKV2D-30A0A075B6S6 120 aa14.3□□□□□ -0.12
CCDC88C-205ENST00000553403 COA5Q86WW8 74 aa14.29□□□□□ -0.12
CCDC88C-205ENST00000553403 Q75L30 129 aa14.25□□□□□ -0.13
CCDC88C-205ENST00000553403 C7orf65Q6ZTY9 151 aa14.24□□□□□ -0.13
CCDC88C-205ENST00000553403 C4orf26Q17RF5 130 aa14.21□□□□□ -0.13
CCDC88C-205ENST00000553403 DMAC1Q96GE9 116 aa14.2□□□□□ -0.14
CCDC88C-205ENST00000553403 ACYP2P14621 99 aa14.17□□□□□ -0.14
CCDC88C-205ENST00000553403 MPLKIPQ8TAP9 179 aa14.17□□□□□ -0.14
CCDC88C-205ENST00000553403 Q1T7F1 81 aa14.16□□□□□ -0.14
CCDC88C-205ENST00000553403 V9GYY9 64 aa14.09□□□□□ -0.15
CCDC88C-205ENST00000553403 RPL37P61927 97 aaKnown RBP14.03□□□□□ -0.16
CCDC88C-205ENST00000553403 XP32Q5T750 250 aa14.01□□□□□ -0.17
CCDC88C-205ENST00000553403 ATP11AUNQ6ZP68 121 aa14□□□□□ -0.17
CCDC88C-205ENST00000553403 SPINK7P58062 85 aa13.99□□□□□ -0.17
CCDC88C-205ENST00000553403 A8MUN3 132 aa13.95□□□□□ -0.18
CCDC88C-205ENST00000553403 CHKB-CPT1BH3BT56 60 aa13.95□□□□□ -0.18
CCDC88C-205ENST00000553403 TPRXLQ17RH7 258 aa13.88□□□□□ -0.19
CCDC88C-205ENST00000553403 HMCN2Q8NDA2 5059 aa13.88□□□□□ -0.19
CCDC88C-205ENST00000553403 LINC01558Q9Y6Z2 57 aa13.86□□□□□ -0.19
CCDC88C-205ENST00000553403 PSPHP1O15172 72 aa13.84□□□□□ -0.19
CCDC88C-205ENST00000553403 PRR15LQ9BU68 103 aa13.78□□□□□ -0.2
CCDC88C-205ENST00000553403 Q5VV11 94 aa13.75□□□□□ -0.21
CCDC88C-205ENST00000553403 KRTAP3-1Q9BYR8 98 aa13.74□□□□□ -0.21
CCDC88C-205ENST00000553403 COX6B2Q6YFQ2 88 aa13.72□□□□□ -0.21
CCDC88C-205ENST00000553403 UBR4Q5T4S7 5183 aa13.61□□□□□ -0.23
CCDC88C-205ENST00000553403 SPTSSBQ8NFR3 76 aa13.6□□□□□ -0.23
CCDC88C-205ENST00000553403 BRK1Q8WUW1 75 aa13.56□□□□□ -0.24
CCDC88C-205ENST00000553403 LRP2P98164 4655 aa13.51□□□□□ -0.25
CCDC88C-205ENST00000553403 A0A1B0GU69 56 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 85.9 ms