RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 CYP4F30PQ9H0H9 118 aa9.75□□□□□ -0.85
CUX1-213ENST00000549414 Q6ZR54 194 aa9.74□□□□□ -0.85
CUX1-213ENST00000549414 IGLV7-46A0A075B6I9 117 aa9.74□□□□□ -0.85
CUX1-213ENST00000549414 FP248Q71RG6 208 aaPredicted RBP9.74□□□□□ -0.85
CUX1-213ENST00000549414 Q6ZRN7 208 aaPredicted RBP9.72□□□□□ -0.85
CUX1-213ENST00000549414 Q5XG85 94 aa9.72□□□□□ -0.85
CUX1-213ENST00000549414 HRES1P13985 223 aa9.71□□□□□ -0.86
CUX1-213ENST00000549414 UQCR11O14957 56 aa9.68□□□□□ -0.86
CUX1-213ENST00000549414 TGP01266 2768 aa9.67□□□□□ -0.86
CUX1-213ENST00000549414 Q5VSD8 79 aa9.66□□□□□ -0.86
CUX1-213ENST00000549414 A0A087X002 238 aa9.64□□□□□ -0.87
CUX1-213ENST00000549414 Q1T7F1 81 aa9.63□□□□□ -0.87
CUX1-213ENST00000549414 LINC00483Q53H64 154 aa9.63□□□□□ -0.87
CUX1-213ENST00000549414 Q6ZSA8 131 aa9.63□□□□□ -0.87
CUX1-213ENST00000549414 MIR22HGQ0VDD5 57 aa9.62□□□□□ -0.87
CUX1-213ENST00000549414 LINC01554Q52M75 96 aa9.62□□□□□ -0.87
CUX1-213ENST00000549414 NOTCH2NLQ7Z3S9 236 aa9.61□□□□□ -0.87
CUX1-213ENST00000549414 RBM12B-AS1Q9P1G2 102 aa9.61□□□□□ -0.87
CUX1-213ENST00000549414 KRTAP29-1A8MX34 341 aaPredicted RBP9.61□□□□□ -0.87
CUX1-213ENST00000549414 Q5W150 140 aa9.6□□□□□ -0.87
CUX1-213ENST00000549414 ZCCHC13Q8WW36 166 aaKnown RBP9.51□□□□□ -0.89
CUX1-213ENST00000549414 KRTAP13-1Q8IUC0 172 aa9.49□□□□□ -0.89
CUX1-213ENST00000549414 M0R2T5 61 aa9.49□□□□□ -0.89
CUX1-213ENST00000549414 A0A0D9SG42 100 aa9.48□□□□□ -0.89
CUX1-213ENST00000549414 CDC42SE1Q9NRR8 79 aa9.48□□□□□ -0.89
CUX1-213ENST00000549414 TRRAPQ9Y4A5 3859 aa9.48□□□□□ -0.89
CUX1-213ENST00000549414 Q5VV11 94 aa9.45□□□□□ -0.9
CUX1-213ENST00000549414 LINC01558Q9Y6Z2 57 aa9.43□□□□□ -0.9
CUX1-213ENST00000549414 Q75L30 129 aa9.42□□□□□ -0.9
CUX1-213ENST00000549414 SPINK7P58062 85 aa9.41□□□□□ -0.9
CUX1-213ENST00000549414 SPINT4Q6UDR6 99 aa9.4□□□□□ -0.91
CUX1-213ENST00000549414 KRTAP13-2Q52LG2 175 aa9.39□□□□□ -0.91
CUX1-213ENST00000549414 VPS13CQ709C8 3753 aa9.38□□□□□ -0.91
CUX1-213ENST00000549414 KTN1-AS1Q86SY8 53 aa9.37□□□□□ -0.91
CUX1-213ENST00000549414 ANK3Q12955 4377 aaKnown RBP9.32□□□□□ -0.92
CUX1-213ENST00000549414 A0A1B0GU33 70 aa9.3□□□□□ -0.92
CUX1-213ENST00000549414 DMAC1Q96GE9 116 aa9.3□□□□□ -0.92
CUX1-213ENST00000549414 KRTAP21-3Q3LHN1 58 aa9.29□□□□□ -0.92
CUX1-213ENST00000549414 SEC61BP60468 96 aaKnown RBP9.23□□□□□ -0.93
CUX1-213ENST00000549414 ASB16-AS1Q495Z4 193 aa9.21□□□□□ -0.93
CUX1-213ENST00000549414 CSAG1Q6PB30 78 aa9.2□□□□□ -0.94
CUX1-213ENST00000549414 FBN3Q75N90 2809 aa9.2□□□□□ -0.94
CUX1-213ENST00000549414 PRAC1Q96KF2 57 aa9.19□□□□□ -0.94
CUX1-213ENST00000549414 LCA10Q71F78 164 aa9.18□□□□□ -0.94
CUX1-213ENST00000549414 CRIPTQ9P021 101 aa9.16□□□□□ -0.94
CUX1-213ENST00000549414 CAMK2N1Q7Z7J9 78 aa9.15□□□□□ -0.94
CUX1-213ENST00000549414 ZNF469Q96JG9 3925 aaPredicted RBP9.14□□□□□ -0.95
CUX1-213ENST00000549414 S4R3F8 94 aa9.12□□□□□ -0.95
CUX1-213ENST00000549414 A8MU10 97 aa9.11□□□□□ -0.95
CUX1-213ENST00000549414 KRTAP1-4P0C5Y4 121 aa9.06□□□□□ -0.96
CUX1-213ENST00000549414 R4GN34 69 aa9.04□□□□□ -0.96
CUX1-213ENST00000549414 COL7A1Q02388 2944 aa9.04□□□□□ -0.96
CUX1-213ENST00000549414 SPATA8Q6RVD6 105 aa9.02□□□□□ -0.97
CUX1-213ENST00000549414 MEGF8Q7Z7M0 2845 aa9□□□□□ -0.97
CUX1-213ENST00000549414 RPS29P62273 56 aaKnown RBP9□□□□□ -0.97
CUX1-213ENST00000549414 H1FX-AS1Q4G0G2 97 aa8.95□□□□□ -0.98
CUX1-213ENST00000549414 M0QZ58 72 aa8.87□□□□□ -0.99
CUX1-213ENST00000549414 RPL37P61927 97 aaKnown RBP8.86□□□□□ -0.99
CUX1-213ENST00000549414 ADM2Q7Z4H4 148 aa8.84□□□□□ -0.99
CUX1-213ENST00000549414 A8MUU9 505 aa8.84□□□□□ -1
CUX1-213ENST00000549414 C20orf166-AS1Q96NR2 134 aa8.8□□□□□ -1
CUX1-213ENST00000549414 A6NN06 94 aa8.77□□□□□ -1.01
CUX1-213ENST00000549414 KRTAP16-1A8MUX0 517 aa8.77□□□□□ -1.01
CUX1-213ENST00000549414 CSMD3Q7Z407 3707 aa8.77□□□□□ -1.01
CUX1-213ENST00000549414 AKAP9Q99996 3911 aa8.7□□□□□ -1.02
CUX1-213ENST00000549414 ROMO1P60602 79 aa8.7□□□□□ -1.02
CUX1-213ENST00000549414 H3BS24 57 aa8.68□□□□□ -1.02
CUX1-213ENST00000549414 XP32Q5T750 250 aa8.65□□□□□ -1.02
CUX1-213ENST00000549414 KRTAP13-3Q3SY46 172 aa8.61□□□□□ -1.03
CUX1-213ENST00000549414 HUWE1Q7Z6Z7 4374 aaKnown RBP8.59□□□□□ -1.03
CUX1-213ENST00000549414 A0A1B0GVY2 172 aa8.57□□□□□ -1.04
CUX1-213ENST00000549414 PLAC4Q8WY50 150 aa8.56□□□□□ -1.04
CUX1-213ENST00000549414 LUZP6Q538Z0 58 aa8.53□□□□□ -1.04
CUX1-213ENST00000549414 H0YAA0 97 aa8.45□□□□□ -1.06
CUX1-213ENST00000549414 KRTAP10-8P60410 259 aa8.43□□□□□ -1.06
CUX1-213ENST00000549414 KRTAP25-1Q3LHN0 102 aa8.43□□□□□ -1.06
CUX1-213ENST00000549414 TPRXLQ17RH7 258 aa8.35□□□□□ -1.07
CUX1-213ENST00000549414 P0C880 135 aa8.34□□□□□ -1.07
CUX1-213ENST00000549414 DNAH9Q9NYC9 4486 aa8.31□□□□□ -1.08
CUX1-213ENST00000549414 C10orf95Q9H7T3 257 aa8.26□□□□□ -1.09
CUX1-213ENST00000549414 DNHD1Q96M86 4753 aa8.25□□□□□ -1.09
CUX1-213ENST00000549414 KRTAP3-1Q9BYR8 98 aa8.23□□□□□ -1.09
CUX1-213ENST00000549414 PLECQ15149 4684 aaKnown RBP8.23□□□□□ -1.09
CUX1-213ENST00000549414 DNAH10Q8IVF4 4471 aa8.18□□□□□ -1.1
CUX1-213ENST00000549414 KRTAP10-10P60014 251 aa8.18□□□□□ -1.1
CUX1-213ENST00000549414 DNAH11Q96DT5 4516 aa8.1□□□□□ -1.11
CUX1-213ENST00000549414 DNAH1Q9P2D7 4330 aa8.08□□□□□ -1.12
CUX1-213ENST00000549414 TNP1P09430 55 aa8.05□□□□□ -1.12
CUX1-213ENST00000549414 KRTAP10-4P60372 401 aaPredicted RBP8.03□□□□□ -1.12
CUX1-213ENST00000549414 DNAH5Q8TE73 4624 aa8.03□□□□□ -1.12
CUX1-213ENST00000549414 NDUFAF8A1L188 74 aa8□□□□□ -1.13
CUX1-213ENST00000549414 STARD9Q9P2P6 4700 aa7.98□□□□□ -1.13
CUX1-213ENST00000549414 MT1HL1P0DM35 61 aa7.98□□□□□ -1.13
CUX1-213ENST00000549414 KRTAP12-2P59991 146 aa7.95□□□□□ -1.14
CUX1-213ENST00000549414 PRKDCP78527 4128 aaKnown RBP7.94□□□□□ -1.14
CUX1-213ENST00000549414 KRTAP4-5Q9BYR2 181 aa7.93□□□□□ -1.14
CUX1-213ENST00000549414 VPS13DQ5THJ4 4388 aa7.9□□□□□ -1.14
CUX1-213ENST00000549414 KRTAP13-4Q3LI77 160 aa7.9□□□□□ -1.15
CUX1-213ENST00000549414 KRTAP10-6P60371 365 aaPredicted RBP7.88□□□□□ -1.15
CUX1-213ENST00000549414 FAT1Q14517 4588 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms