RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 A0A087X002 238 aa6.32□□□□□ -1.4
CLIP1-213ENST00000540338 A6NED7 52 aa6.32□□□□□ -1.4
CLIP1-213ENST00000540338 C1orf195Q5TG92 126 aa6.32□□□□□ -1.4
CLIP1-213ENST00000540338 PRR26Q8N8Z3 221 aa6.3□□□□□ -1.4
CLIP1-213ENST00000540338 NOTCH2NLQ7Z3S9 236 aa6.29□□□□□ -1.4
CLIP1-213ENST00000540338 A8MUN3 132 aa6.29□□□□□ -1.4
CLIP1-213ENST00000540338 ASB16-AS1Q495Z4 193 aa6.28□□□□□ -1.4
CLIP1-213ENST00000540338 Q6ZSA8 131 aa6.28□□□□□ -1.4
CLIP1-213ENST00000540338 Q1T7F1 81 aa6.28□□□□□ -1.4
CLIP1-213ENST00000540338 KRTAP13-2Q52LG2 175 aa6.26□□□□□ -1.41
CLIP1-213ENST00000540338 DNAH9Q9NYC9 4486 aa6.25□□□□□ -1.41
CLIP1-213ENST00000540338 C7orf65Q6ZTY9 151 aa6.25□□□□□ -1.41
CLIP1-213ENST00000540338 SEC61GP60059 68 aa6.24□□□□□ -1.41
CLIP1-213ENST00000540338 Q8N9P0 234 aaPredicted RBP6.22□□□□□ -1.41
CLIP1-213ENST00000540338 PMAIP1Q13794 54 aa6.22□□□□□ -1.41
CLIP1-213ENST00000540338 Q5W150 140 aa6.21□□□□□ -1.42
CLIP1-213ENST00000540338 SRRM2Q9UQ35 2752 aaKnown RBP6.2□□□□□ -1.42
CLIP1-213ENST00000540338 HRES1P13985 223 aa6.2□□□□□ -1.42
CLIP1-213ENST00000540338 C9orf92A6NGG3 77 aa6.2□□□□□ -1.42
CLIP1-213ENST00000540338 COL7A1Q02388 2944 aa6.19□□□□□ -1.42
CLIP1-213ENST00000540338 DNAH3Q8TD57 4116 aa6.18□□□□□ -1.42
CLIP1-213ENST00000540338 ANK2Q01484 3957 aa6.17□□□□□ -1.42
CLIP1-213ENST00000540338 A0A1B0GU69 56 aa6.17□□□□□ -1.42
CLIP1-213ENST00000540338 FBN3Q75N90 2809 aa6.16□□□□□ -1.42
CLIP1-213ENST00000540338 CMYA5Q8N3K9 4069 aa6.16□□□□□ -1.42
CLIP1-213ENST00000540338 KRTAP1-4P0C5Y4 121 aa6.16□□□□□ -1.42
CLIP1-213ENST00000540338 MEGF8Q7Z7M0 2845 aa6.15□□□□□ -1.43
CLIP1-213ENST00000540338 PLECQ15149 4684 aaKnown RBP6.12□□□□□ -1.43
CLIP1-213ENST00000540338 RPS29P62273 56 aaKnown RBP6.11□□□□□ -1.43
CLIP1-213ENST00000540338 LINC01558Q9Y6Z2 57 aa6.11□□□□□ -1.43
CLIP1-213ENST00000540338 Q5VV11 94 aa6.09□□□□□ -1.43
CLIP1-213ENST00000540338 ATP11AUNQ6ZP68 121 aa6.09□□□□□ -1.43
CLIP1-213ENST00000540338 DNAH10Q8IVF4 4471 aa6.09□□□□□ -1.43
CLIP1-213ENST00000540338 Q8N1X5 172 aa6.09□□□□□ -1.44
CLIP1-213ENST00000540338 DMAC1Q96GE9 116 aa6.08□□□□□ -1.44
CLIP1-213ENST00000540338 Q75L30 129 aa6.08□□□□□ -1.44
CLIP1-213ENST00000540338 CSMD3Q7Z407 3707 aa6.06□□□□□ -1.44
CLIP1-213ENST00000540338 VPS13DQ5THJ4 4388 aa6.03□□□□□ -1.44
CLIP1-213ENST00000540338 Q5VSD8 79 aa6.03□□□□□ -1.44
CLIP1-213ENST00000540338 DNAH1Q9P2D7 4330 aa6.02□□□□□ -1.45
CLIP1-213ENST00000540338 CDC42SE1Q9NRR8 79 aa6.02□□□□□ -1.45
CLIP1-213ENST00000540338 UQCR11O14957 56 aa6.01□□□□□ -1.45
CLIP1-213ENST00000540338 STARD9Q9P2P6 4700 aa5.99□□□□□ -1.45
CLIP1-213ENST00000540338 KRTAP16-1A8MUX0 517 aa5.99□□□□□ -1.45
CLIP1-213ENST00000540338 SPINK7P58062 85 aa5.98□□□□□ -1.45
CLIP1-213ENST00000540338 DMBT1Q9UGM3 2413 aaPredicted RBP5.98□□□□□ -1.45
CLIP1-213ENST00000540338 A0A1B0GVY2 172 aa5.98□□□□□ -1.45
CLIP1-213ENST00000540338 K7ERS5 55 aa5.98□□□□□ -1.45
CLIP1-213ENST00000540338 KRTAP13-3Q3SY46 172 aa5.98□□□□□ -1.45
CLIP1-213ENST00000540338 PRKDCP78527 4128 aaKnown RBP5.96□□□□□ -1.45
CLIP1-213ENST00000540338 MIR22HGQ0VDD5 57 aa5.96□□□□□ -1.46
CLIP1-213ENST00000540338 FLG2Q5D862 2391 aaPredicted RBP5.95□□□□□ -1.46
CLIP1-213ENST00000540338 DYNC2H1Q8NCM8 4307 aaKnown RBP5.94□□□□□ -1.46
CLIP1-213ENST00000540338 DNAH17Q9UFH2 4485 aa5.92□□□□□ -1.46
CLIP1-213ENST00000540338 A8MUU9 505 aa5.91□□□□□ -1.46
CLIP1-213ENST00000540338 C20orf166-AS1Q96NR2 134 aa5.91□□□□□ -1.46
CLIP1-213ENST00000540338 DNHD1Q96M86 4753 aa5.91□□□□□ -1.46
CLIP1-213ENST00000540338 LCA10Q71F78 164 aa5.89□□□□□ -1.47
CLIP1-213ENST00000540338 LYSTQ99698 3801 aa5.89□□□□□ -1.47
CLIP1-213ENST00000540338 ALMS1Q8TCU4 4167 aa5.85□□□□□ -1.47
CLIP1-213ENST00000540338 DNAH11Q96DT5 4516 aa5.85□□□□□ -1.47
CLIP1-213ENST00000540338 COX6B2Q6YFQ2 88 aa5.84□□□□□ -1.47
CLIP1-213ENST00000540338 KTN1-AS1Q86SY8 53 aa5.84□□□□□ -1.47
CLIP1-213ENST00000540338 A8MU10 97 aa5.84□□□□□ -1.47
CLIP1-213ENST00000540338 KMT2AQ03164 3969 aa5.83□□□□□ -1.48
CLIP1-213ENST00000540338 DNAH7Q8WXX0 4024 aa5.83□□□□□ -1.48
CLIP1-213ENST00000540338 J3QL48 77 aa5.83□□□□□ -1.48
CLIP1-213ENST00000540338 A0A1B0GU33 70 aa5.81□□□□□ -1.48
CLIP1-213ENST00000540338 DNAH2Q9P225 4427 aa5.8□□□□□ -1.48
CLIP1-213ENST00000540338 DNAH8Q96JB1 4490 aa5.78□□□□□ -1.48
CLIP1-213ENST00000540338 RBM12B-AS1Q9P1G2 102 aa5.78□□□□□ -1.48
CLIP1-213ENST00000540338 RPL37P61927 97 aaKnown RBP5.78□□□□□ -1.48
CLIP1-213ENST00000540338 KRTAP10-8P60410 259 aa5.77□□□□□ -1.49
CLIP1-213ENST00000540338 SPATA8Q6RVD6 105 aa5.77□□□□□ -1.49
CLIP1-213ENST00000540338 KRTAP10-4P60372 401 aaPredicted RBP5.75□□□□□ -1.49
CLIP1-213ENST00000540338 S4R3F8 94 aa5.74□□□□□ -1.49
CLIP1-213ENST00000540338 LRP1BQ9NZR2 4599 aa5.72□□□□□ -1.49
CLIP1-213ENST00000540338 DNAH5Q8TE73 4624 aa5.72□□□□□ -1.49
CLIP1-213ENST00000540338 HECTD4Q9Y4D8 3996 aa5.72□□□□□ -1.49
CLIP1-213ENST00000540338 A6NN06 94 aa5.7□□□□□ -1.5
CLIP1-213ENST00000540338 XP32Q5T750 250 aa5.7□□□□□ -1.5
CLIP1-213ENST00000540338 H1FX-AS1Q4G0G2 97 aa5.7□□□□□ -1.5
CLIP1-213ENST00000540338 DNAH6Q9C0G6 4158 aa5.66□□□□□ -1.5
CLIP1-213ENST00000540338 CSAG1Q6PB30 78 aa5.65□□□□□ -1.5
CLIP1-213ENST00000540338 SPINT4Q6UDR6 99 aa5.65□□□□□ -1.5
CLIP1-213ENST00000540338 A0A0D9SG42 100 aa5.64□□□□□ -1.51
CLIP1-213ENST00000540338 SEC61BP60468 96 aaKnown RBP5.64□□□□□ -1.51
CLIP1-213ENST00000540338 DYNC1H1Q14204 4646 aaKnown RBP5.63□□□□□ -1.51
CLIP1-213ENST00000540338 FRAS1Q86XX4 4008 aa5.62□□□□□ -1.51
CLIP1-213ENST00000540338 PRAC1Q96KF2 57 aa5.6□□□□□ -1.51
CLIP1-213ENST00000540338 KRTAP3-1Q9BYR8 98 aa5.59□□□□□ -1.51
CLIP1-213ENST00000540338 TPRXLQ17RH7 258 aa5.58□□□□□ -1.52
CLIP1-213ENST00000540338 HYDINQ4G0P3 5121 aa5.57□□□□□ -1.52
CLIP1-213ENST00000540338 FAT1Q14517 4588 aa5.57□□□□□ -1.52
CLIP1-213ENST00000540338 H3BS24 57 aa5.57□□□□□ -1.52
CLIP1-213ENST00000540338 VPS13BQ7Z7G8 4022 aa5.56□□□□□ -1.52
CLIP1-213ENST00000540338 ADM2Q7Z4H4 148 aa5.53□□□□□ -1.52
CLIP1-213ENST00000540338 SACSQ9NZJ4 4579 aa5.53□□□□□ -1.52
CLIP1-213ENST00000540338 FAT2Q9NYQ8 4349 aa5.52□□□□□ -1.53
CLIP1-213ENST00000540338 MT1HL1P0DM35 61 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 167.5 ms