RNA–Protein interactions for RNA: ENST00000538654.5

SNHG1-209, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 2,768 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-209ENST00000538654 KRTAP13-3Q3SY46 172 aa5.35□□□□□ -1.55
SNHG1-209ENST00000538654 ROMO1P60602 79 aa5.34□□□□□ -1.55
SNHG1-209ENST00000538654 TENM4Q6N022 2769 aa5.34□□□□□ -1.55
SNHG1-209ENST00000538654 NSD1Q96L73 2696 aaPredicted RBP5.34□□□□□ -1.56
SNHG1-209ENST00000538654 UBE2DNLQ8IWF7 75 aa5.33□□□□□ -1.56
SNHG1-209ENST00000538654 RTL8CO15255 209 aa5.33□□□□□ -1.56
SNHG1-209ENST00000538654 Q5W150 140 aa5.33□□□□□ -1.56
SNHG1-209ENST00000538654 SRRM2Q9UQ35 2752 aaKnown RBP5.32□□□□□ -1.56
SNHG1-209ENST00000538654 K7EIL1 84 aa5.32□□□□□ -1.56
SNHG1-209ENST00000538654 UQCR11O14957 56 aa5.32□□□□□ -1.56
SNHG1-209ENST00000538654 MIR22HGQ0VDD5 57 aa5.31□□□□□ -1.56
SNHG1-209ENST00000538654 TRRAPQ9Y4A5 3859 aa5.31□□□□□ -1.56
SNHG1-209ENST00000538654 FASNP49327 2511 aaKnown RBP5.31□□□□□ -1.56
SNHG1-209ENST00000538654 K7ERS5 55 aa5.31□□□□□ -1.56
SNHG1-209ENST00000538654 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.31□□□□□ -1.56
SNHG1-209ENST00000538654 SPACA4Q8TDM5 124 aa5.29□□□□□ -1.56
SNHG1-209ENST00000538654 PANO1I0J062 215 aa5.28□□□□□ -1.56
SNHG1-209ENST00000538654 ALMS1Q8TCU4 4167 aa5.28□□□□□ -1.56
SNHG1-209ENST00000538654 SPINK6Q6UWN8 80 aa5.27□□□□□ -1.57
SNHG1-209ENST00000538654 FLNBO75369 2602 aaKnown RBP5.27□□□□□ -1.57
SNHG1-209ENST00000538654 A8MUU9 505 aa5.26□□□□□ -1.57
SNHG1-209ENST00000538654 P0C880 135 aa5.26□□□□□ -1.57
SNHG1-209ENST00000538654 LORP23490 312 aaPredicted RBP5.26□□□□□ -1.57
SNHG1-209ENST00000538654 MAST4O15021 2626 aa5.26□□□□□ -1.57
SNHG1-209ENST00000538654 ZNF861PO60384 105 aa5.26□□□□□ -1.57
SNHG1-209ENST00000538654 APLNQ9ULZ1 77 aa5.25□□□□□ -1.57
SNHG1-209ENST00000538654 IGKV2-30P06310 120 aa5.25□□□□□ -1.57
SNHG1-209ENST00000538654 HELZ2Q9BYK8 2649 aaKnown RBP5.24□□□□□ -1.57
SNHG1-209ENST00000538654 Q8N1X5 172 aa5.24□□□□□ -1.57
SNHG1-209ENST00000538654 PSORS1C2Q9UIG4 136 aa5.24□□□□□ -1.57
SNHG1-209ENST00000538654 ANK2Q01484 3957 aa5.23□□□□□ -1.57
SNHG1-209ENST00000538654 HECTD1Q9ULT8 2610 aa5.23□□□□□ -1.57
SNHG1-209ENST00000538654 NBDYA0A0U1RRE5 68 aa5.23□□□□□ -1.57
SNHG1-209ENST00000538654 KRTAP24-1Q3LI83 254 aa5.21□□□□□ -1.57
SNHG1-209ENST00000538654 ANAPC11Q9NYG5 84 aa5.21□□□□□ -1.57
SNHG1-209ENST00000538654 NDUFAF8A1L188 74 aa5.21□□□□□ -1.58
SNHG1-209ENST00000538654 Q6ZRN7 208 aaPredicted RBP5.21□□□□□ -1.58
SNHG1-209ENST00000538654 CSAG1Q6PB30 78 aa5.2□□□□□ -1.58
SNHG1-209ENST00000538654 SSBP3-AS1Q7Z2R9 100 aa5.2□□□□□ -1.58
SNHG1-209ENST00000538654 FBN1P35555 2871 aaKnown RBP5.2□□□□□ -1.58
SNHG1-209ENST00000538654 DNAH10Q8IVF4 4471 aa5.18□□□□□ -1.58
SNHG1-209ENST00000538654 DNAH3Q8TD57 4116 aa5.18□□□□□ -1.58
SNHG1-209ENST00000538654 IGLV7-43P04211 117 aa5.17□□□□□ -1.58
SNHG1-209ENST00000538654 C20orf166-AS1Q96NR2 134 aa5.16□□□□□ -1.58
SNHG1-209ENST00000538654 A0A087WTM6 91 aa5.15□□□□□ -1.58
SNHG1-209ENST00000538654 IGKV2D-30A0A075B6S6 120 aa5.15□□□□□ -1.59
SNHG1-209ENST00000538654 CAMK2N1Q7Z7J9 78 aa5.14□□□□□ -1.59
SNHG1-209ENST00000538654 NBEAL1Q6ZS30 2694 aa5.14□□□□□ -1.59
SNHG1-209ENST00000538654 HUWE1Q7Z6Z7 4374 aaKnown RBP5.13□□□□□ -1.59
SNHG1-209ENST00000538654 CMYA5Q8N3K9 4069 aa5.13□□□□□ -1.59
SNHG1-209ENST00000538654 DNAH9Q9NYC9 4486 aa5.13□□□□□ -1.59
SNHG1-209ENST00000538654 LYSTQ99698 3801 aa5.13□□□□□ -1.59
SNHG1-209ENST00000538654 NOTCH1P46531 2555 aa5.12□□□□□ -1.59
SNHG1-209ENST00000538654 NUPR2A6NF83 97 aa5.12□□□□□ -1.59
SNHG1-209ENST00000538654 STAB1Q9NY15 2570 aa5.1□□□□□ -1.59
SNHG1-209ENST00000538654 COL6A5A8TX70 2615 aa5.1□□□□□ -1.59
SNHG1-209ENST00000538654 COL7A1Q02388 2944 aa5.1□□□□□ -1.59
SNHG1-209ENST00000538654 LY6G6CO95867 125 aa5.1□□□□□ -1.59
SNHG1-209ENST00000538654 CSMD3Q7Z407 3707 aa5.09□□□□□ -1.59
SNHG1-209ENST00000538654 KRTAP25-1Q3LHN0 102 aa5.06□□□□□ -1.6
SNHG1-209ENST00000538654 TYMSOSQ8TAI1 123 aa5.05□□□□□ -1.6
SNHG1-209ENST00000538654 STAB2Q8WWQ8 2551 aa5.05□□□□□ -1.6
SNHG1-209ENST00000538654 SPINK1P00995 79 aa5.04□□□□□ -1.6
SNHG1-209ENST00000538654 DNAH8Q96JB1 4490 aa5.03□□□□□ -1.6
SNHG1-209ENST00000538654 DYNC2H1Q8NCM8 4307 aaKnown RBP5.03□□□□□ -1.6
SNHG1-209ENST00000538654 Q6ZSA8 131 aa5.02□□□□□ -1.61
SNHG1-209ENST00000538654 H0YAA0 97 aa5.02□□□□□ -1.61
SNHG1-209ENST00000538654 KRTAP13-2Q52LG2 175 aa5.01□□□□□ -1.61
SNHG1-209ENST00000538654 LINC00304Q8N9R0 145 aa5.01□□□□□ -1.61
SNHG1-209ENST00000538654 KRTAP3-1Q9BYR8 98 aa5□□□□□ -1.61
SNHG1-209ENST00000538654 A0A1B0GU33 70 aa4.99□□□□□ -1.61
SNHG1-209ENST00000538654 H1FX-AS1Q4G0G2 97 aa4.96□□□□□ -1.62
SNHG1-209ENST00000538654 DNAH7Q8WXX0 4024 aa4.96□□□□□ -1.62
SNHG1-209ENST00000538654 FRAS1Q86XX4 4008 aa4.94□□□□□ -1.62
SNHG1-209ENST00000538654 HECTD4Q9Y4D8 3996 aa4.94□□□□□ -1.62
SNHG1-209ENST00000538654 MEGF8Q7Z7M0 2845 aa4.93□□□□□ -1.62
SNHG1-209ENST00000538654 TGP01266 2768 aa4.92□□□□□ -1.62
SNHG1-209ENST00000538654 DNAH17Q9UFH2 4485 aa4.91□□□□□ -1.62
SNHG1-209ENST00000538654 KRTAP1-4P0C5Y4 121 aa4.9□□□□□ -1.62
SNHG1-209ENST00000538654 PLECQ15149 4684 aaKnown RBP4.9□□□□□ -1.62
SNHG1-209ENST00000538654 VPS13DQ5THJ4 4388 aa4.9□□□□□ -1.62
SNHG1-209ENST00000538654 MGAM2Q2M2H8 2515 aa4.9□□□□□ -1.63
SNHG1-209ENST00000538654 RPS29P62273 56 aaKnown RBP4.88□□□□□ -1.63
SNHG1-209ENST00000538654 FBN3Q75N90 2809 aa4.85□□□□□ -1.63
SNHG1-209ENST00000538654 KRTAP10-2P60368 255 aa4.83□□□□□ -1.64
SNHG1-209ENST00000538654 COX6B2Q6YFQ2 88 aa4.83□□□□□ -1.64
SNHG1-209ENST00000538654 PRKDCP78527 4128 aaKnown RBP4.81□□□□□ -1.64
SNHG1-209ENST00000538654 CRIPTQ9P021 101 aa4.81□□□□□ -1.64
SNHG1-209ENST00000538654 KRTAP10-1P60331 282 aa4.79□□□□□ -1.64
SNHG1-209ENST00000538654 DNAH2Q9P225 4427 aa4.79□□□□□ -1.64
SNHG1-209ENST00000538654 RPL37P61927 97 aaKnown RBP4.79□□□□□ -1.64
SNHG1-209ENST00000538654 STARD9Q9P2P6 4700 aa4.77□□□□□ -1.65
SNHG1-209ENST00000538654 SPINT4Q6UDR6 99 aa4.77□□□□□ -1.65
SNHG1-209ENST00000538654 C9orf92A6NGG3 77 aa4.75□□□□□ -1.65
SNHG1-209ENST00000538654 DNAH11Q96DT5 4516 aa4.75□□□□□ -1.65
SNHG1-209ENST00000538654 FLG2Q5D862 2391 aaPredicted RBP4.74□□□□□ -1.65
SNHG1-209ENST00000538654 R4GN34 69 aa4.73□□□□□ -1.65
SNHG1-209ENST00000538654 KMT2AQ03164 3969 aa4.73□□□□□ -1.65
SNHG1-209ENST00000538654 DNAH6Q9C0G6 4158 aa4.7□□□□□ -1.66
SNHG1-209ENST00000538654 TPRXLQ17RH7 258 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 104.2 ms