RNA–Protein interactions for RNA: ENST00000538492.5

RAB40C-204, Transcript of RAB40C, member RAS oncogene family, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RAB40C, Length 2,569 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-204ENST00000538492 KRTAP10-1P60331 282 aa14.64□□□□□ -0.07
RAB40C-204ENST00000538492 TP53AIP1Q9HCN2 124 aa14.63□□□□□ -0.07
RAB40C-204ENST00000538492 LINC00336Q6ZUF6 198 aa14.62□□□□□ -0.07
RAB40C-204ENST00000538492 FAT2Q9NYQ8 4349 aa14.61□□□□□ -0.07
RAB40C-204ENST00000538492 LRP1BQ9NZR2 4599 aa14.6□□□□□ -0.07
RAB40C-204ENST00000538492 MRPL34Q9BQ48 92 aaKnown RBP14.6□□□□□ -0.07
RAB40C-204ENST00000538492 SPANXA2-OT1Q8N9U9 137 aa14.59□□□□□ -0.07
RAB40C-204ENST00000538492 Q6ZSA8 131 aa14.57□□□□□ -0.08
RAB40C-204ENST00000538492 SSBP3-AS1Q7Z2R9 100 aa14.56□□□□□ -0.08
RAB40C-204ENST00000538492 PCOTHQ58A44 107 aa14.56□□□□□ -0.08
RAB40C-204ENST00000538492 CD164Q04900 197 aa14.53□□□□□ -0.08
RAB40C-204ENST00000538492 KRTAP13-2Q52LG2 175 aa14.5□□□□□ -0.09
RAB40C-204ENST00000538492 VPS13BQ7Z7G8 4022 aa14.47□□□□□ -0.09
RAB40C-204ENST00000538492 Q1T7F1 81 aa14.45□□□□□ -0.1
RAB40C-204ENST00000538492 IGLV7-46A0A075B6I9 117 aa14.44□□□□□ -0.1
RAB40C-204ENST00000538492 BRK1Q8WUW1 75 aa14.4□□□□□ -0.1
RAB40C-204ENST00000538492 Q5W150 140 aa14.39□□□□□ -0.11
RAB40C-204ENST00000538492 PSPHP1O15172 72 aa14.38□□□□□ -0.11
RAB40C-204ENST00000538492 PRO0628Q9UI54 55 aa14.37□□□□□ -0.11
RAB40C-204ENST00000538492 KRTAP1-4P0C5Y4 121 aa14.36□□□□□ -0.11
RAB40C-204ENST00000538492 PKHD1P08F94 4074 aa14.34□□□□□ -0.11
RAB40C-204ENST00000538492 C1orf195Q5TG92 126 aa14.34□□□□□ -0.11
RAB40C-204ENST00000538492 COA5Q86WW8 74 aa14.33□□□□□ -0.11
RAB40C-204ENST00000538492 C8orf87E5RJ46 101 aa14.32□□□□□ -0.12
RAB40C-204ENST00000538492 LINC00313P59037 77 aa14.31□□□□□ -0.12
RAB40C-204ENST00000538492 KRTAP13-3Q3SY46 172 aa14.29□□□□□ -0.12
RAB40C-204ENST00000538492 Q8N9P0 234 aaPredicted RBP14.28□□□□□ -0.12
RAB40C-204ENST00000538492 KRTAP21-3Q3LHN1 58 aa14.27□□□□□ -0.13
RAB40C-204ENST00000538492 LOC101927531A0A1B0GV80 90 aa14.27□□□□□ -0.13
RAB40C-204ENST00000538492 PLA2G1BP04054 148 aaKnown RBP14.27□□□□□ -0.13
RAB40C-204ENST00000538492 A8MUN3 132 aa14.26□□□□□ -0.13
RAB40C-204ENST00000538492 SACSQ9NZJ4 4579 aa14.24□□□□□ -0.13
RAB40C-204ENST00000538492 V9GYY9 64 aa14.24□□□□□ -0.13
RAB40C-204ENST00000538492 RETNLBQ9BQ08 111 aa14.22□□□□□ -0.13
RAB40C-204ENST00000538492 LIMD2Q9BT23 127 aa14.2□□□□□ -0.14
RAB40C-204ENST00000538492 TYMSOSQ8TAI1 123 aa14.19□□□□□ -0.14
RAB40C-204ENST00000538492 HRES1P13985 223 aa14.16□□□□□ -0.14
RAB40C-204ENST00000538492 C4orf48Q5BLP8 95 aa14.16□□□□□ -0.14
RAB40C-204ENST00000538492 Q5VV11 94 aa14.13□□□□□ -0.15
RAB40C-204ENST00000538492 FAM229AH3BQW9 127 aa14.12□□□□□ -0.15
RAB40C-204ENST00000538492 PRR15LQ9BU68 103 aa14.12□□□□□ -0.15
RAB40C-204ENST00000538492 KRTAP16-1A8MUX0 517 aa14.11□□□□□ -0.15
RAB40C-204ENST00000538492 SMR3BP02814 79 aaPredicted RBP14.1□□□□□ -0.15
RAB40C-204ENST00000538492 SPAG11AQ6PDA7 123 aa14.07□□□□□ -0.16
RAB40C-204ENST00000538492 PRR26Q8N8Z3 221 aa14.07□□□□□ -0.16
RAB40C-204ENST00000538492 DYNC1H1Q14204 4646 aaKnown RBP14.06□□□□□ -0.16
RAB40C-204ENST00000538492 SPINK1P00995 79 aa14.06□□□□□ -0.16
RAB40C-204ENST00000538492 CHKB-CPT1BH3BT56 60 aa14.02□□□□□ -0.16
RAB40C-204ENST00000538492 IGKV2-30P06310 120 aa13.99□□□□□ -0.17
RAB40C-204ENST00000538492 LINC00304Q8N9R0 145 aa13.98□□□□□ -0.17
RAB40C-204ENST00000538492 A8MU10 97 aa13.95□□□□□ -0.18
RAB40C-204ENST00000538492 FAT1Q14517 4588 aa13.94□□□□□ -0.18
RAB40C-204ENST00000538492 ACYP2P14621 99 aa13.93□□□□□ -0.18
RAB40C-204ENST00000538492 LINC01558Q9Y6Z2 57 aa13.92□□□□□ -0.18
RAB40C-204ENST00000538492 A0A1B0GVY2 172 aa13.92□□□□□ -0.18
RAB40C-204ENST00000538492 IGKV2D-30A0A075B6S6 120 aa13.91□□□□□ -0.18
RAB40C-204ENST00000538492 Q75L30 129 aa13.9□□□□□ -0.18
RAB40C-204ENST00000538492 DMAC1Q96GE9 116 aa13.9□□□□□ -0.18
RAB40C-204ENST00000538492 APOBP04114 4563 aaKnown RBP13.89□□□□□ -0.19
RAB40C-204ENST00000538492 A6NED7 52 aa13.84□□□□□ -0.19
RAB40C-204ENST00000538492 RPS29P62273 56 aaKnown RBP13.82□□□□□ -0.2
RAB40C-204ENST00000538492 KRTAP10-4P60372 401 aaPredicted RBP13.81□□□□□ -0.2
RAB40C-204ENST00000538492 RYR2Q92736 4967 aa13.81□□□□□ -0.2
RAB40C-204ENST00000538492 KMT2CQ8NEZ4 4911 aaKnown RBP13.77□□□□□ -0.2
RAB40C-204ENST00000538492 LCA10Q71F78 164 aa13.76□□□□□ -0.21
RAB40C-204ENST00000538492 PKHD1L1Q86WI1 4243 aa13.72□□□□□ -0.21
RAB40C-204ENST00000538492 C9orf92A6NGG3 77 aa13.72□□□□□ -0.21
RAB40C-204ENST00000538492 SPINK7P58062 85 aa13.69□□□□□ -0.22
RAB40C-204ENST00000538492 C7orf65Q6ZTY9 151 aa13.69□□□□□ -0.22
RAB40C-204ENST00000538492 SPTSSBQ8NFR3 76 aa13.65□□□□□ -0.22
RAB40C-204ENST00000538492 CDC42SE1Q9NRR8 79 aa13.62□□□□□ -0.23
RAB40C-204ENST00000538492 PMAIP1Q13794 54 aa13.59□□□□□ -0.23
RAB40C-204ENST00000538492 Q8N1X5 172 aa13.58□□□□□ -0.24
RAB40C-204ENST00000538492 ATP11AUNQ6ZP68 121 aa13.53□□□□□ -0.24
RAB40C-204ENST00000538492 C20orf166-AS1Q96NR2 134 aa13.53□□□□□ -0.24
RAB40C-204ENST00000538492 A0A1B0GU69 56 aa13.52□□□□□ -0.24
RAB40C-204ENST00000538492 A8MUU9 505 aa13.52□□□□□ -0.24
RAB40C-204ENST00000538492 FLG2Q5D862 2391 aaPredicted RBP13.47□□□□□ -0.25
RAB40C-204ENST00000538492 LRP1Q07954 4544 aaKnown RBP13.46□□□□□ -0.26
RAB40C-204ENST00000538492 TNXBP22105 4242 aa13.36□□□□□ -0.27
RAB40C-204ENST00000538492 HSPG2P98160 4391 aa13.35□□□□□ -0.27
RAB40C-204ENST00000538492 Q5VSD8 79 aa13.33□□□□□ -0.27
RAB40C-204ENST00000538492 RYR3Q15413 4870 aa13.33□□□□□ -0.28
RAB40C-204ENST00000538492 FAT3Q8TDW7 4589 aa13.32□□□□□ -0.28
RAB40C-204ENST00000538492 A6NN06 94 aa13.32□□□□□ -0.28
RAB40C-204ENST00000538492 KRTAP3-1Q9BYR8 98 aa13.28□□□□□ -0.28
RAB40C-204ENST00000538492 KRTAP10-8P60410 259 aa13.27□□□□□ -0.29
RAB40C-204ENST00000538492 UQCR11O14957 56 aa13.23□□□□□ -0.29
RAB40C-204ENST00000538492 DMBT1Q9UGM3 2413 aaPredicted RBP13.2□□□□□ -0.3
RAB40C-204ENST00000538492 SPATA8Q6RVD6 105 aa13.2□□□□□ -0.3
RAB40C-204ENST00000538492 KTN1-AS1Q86SY8 53 aa13.19□□□□□ -0.3
RAB40C-204ENST00000538492 RYR1P21817 5038 aa13.19□□□□□ -0.3
RAB40C-204ENST00000538492 MIR22HGQ0VDD5 57 aa13.19□□□□□ -0.3
RAB40C-204ENST00000538492 KRTAP17-1Q9BYP8 105 aa13.16□□□□□ -0.3
RAB40C-204ENST00000538492 SEC61GP60059 68 aa13.14□□□□□ -0.31
RAB40C-204ENST00000538492 MYCBP2O75592 4640 aa13.08□□□□□ -0.32
RAB40C-204ENST00000538492 KIAA1109Q2LD37 5005 aa13.07□□□□□ -0.32
RAB40C-204ENST00000538492 COX6B2Q6YFQ2 88 aa13.06□□□□□ -0.32
RAB40C-204ENST00000538492 RPL37P61927 97 aaKnown RBP12.99□□□□□ -0.33
RAB40C-204ENST00000538492 XP32Q5T750 250 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms