RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 Q8N9P0 234 aaPredicted RBP7.88□□□□□ -1.15
LDLR-203ENST00000535915 DNHD1Q96M86 4753 aa7.88□□□□□ -1.15
LDLR-203ENST00000535915 LY6G6CO95867 125 aa7.87□□□□□ -1.15
LDLR-203ENST00000535915 DNAH6Q9C0G6 4158 aa7.86□□□□□ -1.15
LDLR-203ENST00000535915 A6NED7 52 aa7.85□□□□□ -1.15
LDLR-203ENST00000535915 IGHV6-1A0A0B4J1U7 121 aa7.85□□□□□ -1.15
LDLR-203ENST00000535915 C8orf17Q9NRJ1 99 aa7.85□□□□□ -1.15
LDLR-203ENST00000535915 CDK2AP2O75956 126 aa7.84□□□□□ -1.15
LDLR-203ENST00000535915 ATP11AUNQ6ZP68 121 aa7.84□□□□□ -1.15
LDLR-203ENST00000535915 A0A1B0GVX0 72 aa7.83□□□□□ -1.16
LDLR-203ENST00000535915 IGLV7-43P04211 117 aa7.83□□□□□ -1.16
LDLR-203ENST00000535915 ASB16-AS1Q495Z4 193 aa7.82□□□□□ -1.16
LDLR-203ENST00000535915 NDUFS5O43920 106 aa7.82□□□□□ -1.16
LDLR-203ENST00000535915 LCA10Q71F78 164 aa7.82□□□□□ -1.16
LDLR-203ENST00000535915 SPANXA2-OT1Q8N9U9 137 aa7.82□□□□□ -1.16
LDLR-203ENST00000535915 ALMS1Q8TCU4 4167 aa7.82□□□□□ -1.16
LDLR-203ENST00000535915 TP53AIP1Q9HCN2 124 aa7.81□□□□□ -1.16
LDLR-203ENST00000535915 DNAH5Q8TE73 4624 aa7.81□□□□□ -1.16
LDLR-203ENST00000535915 DNAH11Q96DT5 4516 aa7.81□□□□□ -1.16
LDLR-203ENST00000535915 Q75L30 129 aa7.79□□□□□ -1.16
LDLR-203ENST00000535915 CIRBP-AS1Q8TBR5 109 aa7.78□□□□□ -1.16
LDLR-203ENST00000535915 SPINK6Q6UWN8 80 aa7.77□□□□□ -1.16
LDLR-203ENST00000535915 KRTAP10-2P60368 255 aa7.77□□□□□ -1.17
LDLR-203ENST00000535915 MRPL34Q9BQ48 92 aaKnown RBP7.77□□□□□ -1.17
LDLR-203ENST00000535915 A6NN06 94 aa7.76□□□□□ -1.17
LDLR-203ENST00000535915 A0A087X002 238 aa7.76□□□□□ -1.17
LDLR-203ENST00000535915 NOTCH2NLQ7Z3S9 236 aa7.76□□□□□ -1.17
LDLR-203ENST00000535915 PCOTHQ58A44 107 aa7.75□□□□□ -1.17
LDLR-203ENST00000535915 LOC101927531A0A1B0GV80 90 aa7.74□□□□□ -1.17
LDLR-203ENST00000535915 COA5Q86WW8 74 aa7.74□□□□□ -1.17
LDLR-203ENST00000535915 CDC42SE1Q9NRR8 79 aa7.74□□□□□ -1.17
LDLR-203ENST00000535915 PKD1P98161 4303 aa7.72□□□□□ -1.17
LDLR-203ENST00000535915 IGLV7-46A0A075B6I9 117 aa7.72□□□□□ -1.17
LDLR-203ENST00000535915 C7orf65Q6ZTY9 151 aa7.72□□□□□ -1.17
LDLR-203ENST00000535915 SSBP3-AS1Q7Z2R9 100 aa7.71□□□□□ -1.17
LDLR-203ENST00000535915 HYDINQ4G0P3 5121 aa7.69□□□□□ -1.18
LDLR-203ENST00000535915 SPAG11AQ6PDA7 123 aa7.69□□□□□ -1.18
LDLR-203ENST00000535915 FAT2Q9NYQ8 4349 aa7.67□□□□□ -1.18
LDLR-203ENST00000535915 LRP1BQ9NZR2 4599 aa7.67□□□□□ -1.18
LDLR-203ENST00000535915 KRTAP10-1P60331 282 aa7.66□□□□□ -1.18
LDLR-203ENST00000535915 Q6ZSA8 131 aa7.65□□□□□ -1.18
LDLR-203ENST00000535915 KRTAP13-2Q52LG2 175 aa7.63□□□□□ -1.19
LDLR-203ENST00000535915 LINC01558Q9Y6Z2 57 aa7.63□□□□□ -1.19
LDLR-203ENST00000535915 Q5W150 140 aa7.63□□□□□ -1.19
LDLR-203ENST00000535915 C8orf87E5RJ46 101 aa7.62□□□□□ -1.19
LDLR-203ENST00000535915 VPS13BQ7Z7G8 4022 aa7.61□□□□□ -1.19
LDLR-203ENST00000535915 SPINK7P58062 85 aa7.61□□□□□ -1.19
LDLR-203ENST00000535915 C4orf48Q5BLP8 95 aa7.61□□□□□ -1.19
LDLR-203ENST00000535915 LINC00313P59037 77 aa7.59□□□□□ -1.19
LDLR-203ENST00000535915 KRTAP13-3Q3SY46 172 aa7.59□□□□□ -1.19
LDLR-203ENST00000535915 HRES1P13985 223 aa7.56□□□□□ -1.2
LDLR-203ENST00000535915 KRTAP1-4P0C5Y4 121 aa7.55□□□□□ -1.2
LDLR-203ENST00000535915 RETNLBQ9BQ08 111 aa7.53□□□□□ -1.2
LDLR-203ENST00000535915 PRAC1Q96KF2 57 aa7.52□□□□□ -1.21
LDLR-203ENST00000535915 PKHD1P08F94 4074 aa7.52□□□□□ -1.21
LDLR-203ENST00000535915 FAM229AH3BQW9 127 aa7.52□□□□□ -1.21
LDLR-203ENST00000535915 PLA2G1BP04054 148 aaKnown RBP7.51□□□□□ -1.21
LDLR-203ENST00000535915 TYMSOSQ8TAI1 123 aa7.48□□□□□ -1.21
LDLR-203ENST00000535915 KRTAP16-1A8MUX0 517 aa7.47□□□□□ -1.21
LDLR-203ENST00000535915 SACSQ9NZJ4 4579 aa7.45□□□□□ -1.22
LDLR-203ENST00000535915 ACYP2P14621 99 aa7.45□□□□□ -1.22
LDLR-203ENST00000535915 ADM2Q7Z4H4 148 aa7.45□□□□□ -1.22
LDLR-203ENST00000535915 PRR26Q8N8Z3 221 aa7.44□□□□□ -1.22
LDLR-203ENST00000535915 IGKV2-30P06310 120 aa7.44□□□□□ -1.22
LDLR-203ENST00000535915 SPINK1P00995 79 aa7.43□□□□□ -1.22
LDLR-203ENST00000535915 LINC01554Q52M75 96 aa7.43□□□□□ -1.22
LDLR-203ENST00000535915 DMAC1Q96GE9 116 aa7.42□□□□□ -1.22
LDLR-203ENST00000535915 H3BS24 57 aa7.41□□□□□ -1.22
LDLR-203ENST00000535915 IGKV2D-30A0A075B6S6 120 aa7.38□□□□□ -1.23
LDLR-203ENST00000535915 LINC00304Q8N9R0 145 aa7.37□□□□□ -1.23
LDLR-203ENST00000535915 SMR3BP02814 79 aaPredicted RBP7.37□□□□□ -1.23
LDLR-203ENST00000535915 DYNC1H1Q14204 4646 aaKnown RBP7.37□□□□□ -1.23
LDLR-203ENST00000535915 A0A1B0GU69 56 aa7.32□□□□□ -1.24
LDLR-203ENST00000535915 RPS29P62273 56 aaKnown RBP7.32□□□□□ -1.24
LDLR-203ENST00000535915 FAT1Q14517 4588 aa7.3□□□□□ -1.24
LDLR-203ENST00000535915 APOBP04114 4563 aaKnown RBP7.29□□□□□ -1.24
LDLR-203ENST00000535915 SPATA8Q6RVD6 105 aa7.27□□□□□ -1.25
LDLR-203ENST00000535915 A0A1B0GVY2 172 aa7.26□□□□□ -1.25
LDLR-203ENST00000535915 MIR22HGQ0VDD5 57 aa7.26□□□□□ -1.25
LDLR-203ENST00000535915 PKHD1L1Q86WI1 4243 aa7.25□□□□□ -1.25
LDLR-203ENST00000535915 UQCR11O14957 56 aa7.24□□□□□ -1.25
LDLR-203ENST00000535915 CSAG1Q6PB30 78 aa7.24□□□□□ -1.25
LDLR-203ENST00000535915 C9orf92A6NGG3 77 aa7.23□□□□□ -1.25
LDLR-203ENST00000535915 KRTAP10-4P60372 401 aaPredicted RBP7.22□□□□□ -1.25
LDLR-203ENST00000535915 Q8N1X5 172 aa7.2□□□□□ -1.26
LDLR-203ENST00000535915 RYR2Q92736 4967 aa7.18□□□□□ -1.26
LDLR-203ENST00000535915 A8MUU9 505 aa7.16□□□□□ -1.26
LDLR-203ENST00000535915 C20orf166-AS1Q96NR2 134 aa7.16□□□□□ -1.26
LDLR-203ENST00000535915 KMT2CQ8NEZ4 4911 aaKnown RBP7.14□□□□□ -1.27
LDLR-203ENST00000535915 FLG2Q5D862 2391 aaPredicted RBP7.08□□□□□ -1.28
LDLR-203ENST00000535915 LRP1Q07954 4544 aaKnown RBP7.03□□□□□ -1.28
LDLR-203ENST00000535915 TNXBP22105 4242 aa7.03□□□□□ -1.28
LDLR-203ENST00000535915 FAT3Q8TDW7 4589 aa7.03□□□□□ -1.28
LDLR-203ENST00000535915 KRTAP3-1Q9BYR8 98 aa7.02□□□□□ -1.29
LDLR-203ENST00000535915 HSPG2P98160 4391 aa6.98□□□□□ -1.29
LDLR-203ENST00000535915 Q5VSD8 79 aa6.97□□□□□ -1.29
LDLR-203ENST00000535915 KRTAP10-8P60410 259 aa6.95□□□□□ -1.3
LDLR-203ENST00000535915 ROMO1P60602 79 aa6.95□□□□□ -1.3
LDLR-203ENST00000535915 KRTAP25-1Q3LHN0 102 aa6.95□□□□□ -1.3
LDLR-203ENST00000535915 COX6B2Q6YFQ2 88 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 90.2 ms