RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 CCDC141Q6ZP82 1450 aa-0.15□□□□□ -2.43
CD44-238ENST00000534296 FAM223BA6NKX1 122 aa-0.15□□□□□ -2.43
CD44-238ENST00000534296 PRM1P04553 51 aa-0.15□□□□□ -2.43
CD44-238ENST00000534296 BCORQ6W2J9 1755 aa-0.15□□□□□ -2.43
CD44-238ENST00000534296 RRBP1Q9P2E9 1410 aaKnown RBP-0.15□□□□□ -2.43
CD44-238ENST00000534296 ABCA9Q8IUA7 1624 aa-0.16□□□□□ -2.43
CD44-238ENST00000534296 TMEM262E9PQX1 116 aa-0.16□□□□□ -2.44
CD44-238ENST00000534296 HSD52Q0P140 79 aa-0.16□□□□□ -2.44
CD44-238ENST00000534296 KRTAP19-2Q3LHN2 52 aa-0.16□□□□□ -2.44
CD44-238ENST00000534296 LINC00959A0A1B0GUT2 108 aa-0.17□□□□□ -2.44
CD44-238ENST00000534296 C20orf202A1L168 122 aa-0.17□□□□□ -2.44
CD44-238ENST00000534296 MT2AP02795 61 aa-0.17□□□□□ -2.44
CD44-238ENST00000534296 MT1FP04733 61 aa-0.17□□□□□ -2.44
CD44-238ENST00000534296 C14orf144Q96I85 54 aa-0.17□□□□□ -2.44
CD44-238ENST00000534296 H3BQF6 201 aa-0.18□□□□□ -2.44
CD44-238ENST00000534296 NDUFC1O43677 76 aa-0.18□□□□□ -2.44
CD44-238ENST00000534296 CRIPTQ9P021 101 aa-0.18□□□□□ -2.44
CD44-238ENST00000534296 AP4S1Q9Y587 144 aa-0.18□□□□□ -2.44
CD44-238ENST00000534296 FYCO1Q9BQS8 1478 aa-0.18□□□□□ -2.44
CD44-238ENST00000534296 ABCA10Q8WWZ4 1543 aa-0.18□□□□□ -2.44
CD44-238ENST00000534296 AKAP12Q02952 1782 aa-0.19□□□□□ -2.44
CD44-238ENST00000534296 A0A1B0GU69 56 aa-0.19□□□□□ -2.44
CD44-238ENST00000534296 hADV29S1A0JD25 119 aa-0.19□□□□□ -2.44
CD44-238ENST00000534296 CPSF4LA6NMK7 179 aaKnown RBP-0.19□□□□□ -2.44
CD44-238ENST00000534296 GNGT1P63211 74 aa-0.19□□□□□ -2.44
CD44-238ENST00000534296 PMCHL1Q16048 86 aa-0.19□□□□□ -2.44
CD44-238ENST00000534296 LCN9Q8WX39 176 aa-0.19□□□□□ -2.44
CD44-238ENST00000534296 APLNQ9ULZ1 77 aa-0.19□□□□□ -2.44
CD44-238ENST00000534296 NCOA2Q15596 1464 aa-0.19□□□□□ -2.44
CD44-238ENST00000534296 A0A1B0GUL6 1792 aa-0.19□□□□□ -2.44
CD44-238ENST00000534296 MYH4Q9Y623 1939 aa-0.2□□□□□ -2.44
CD44-238ENST00000534296 C7orf77A4D0Y5 90 aa-0.2□□□□□ -2.44
CD44-238ENST00000534296 I3L3M4 83 aa-0.2□□□□□ -2.44
CD44-238ENST00000534296 KLK9Q2XQG4 91 aa-0.2□□□□□ -2.44
CD44-238ENST00000534296 KRTAP6-2Q3LI66 62 aa-0.2□□□□□ -2.44
CD44-238ENST00000534296 SYCP2Q9BX26 1530 aa-0.2□□□□□ -2.44
CD44-238ENST00000534296 CDC42BPGQ6DT37 1551 aa-0.2□□□□□ -2.44
CD44-238ENST00000534296 S100PP25815 95 aa-0.21□□□□□ -2.44
CD44-238ENST00000534296 KRTAP19-8Q3LI54 63 aa-0.21□□□□□ -2.44
CD44-238ENST00000534296 PSMG4Q5JS54 123 aa-0.21□□□□□ -2.44
CD44-238ENST00000534296 ANKRD36CQ5JPF3 1778 aa-0.22□□□□□ -2.44
CD44-238ENST00000534296 GNGT2O14610 69 aa-0.22□□□□□ -2.44
CD44-238ENST00000534296 KRTAP19-7Q3SYF9 63 aa-0.22□□□□□ -2.44
CD44-238ENST00000534296 C6orf201Q7Z4U5 140 aa-0.22□□□□□ -2.44
CD44-238ENST00000534296 TOP2AP11388 1531 aaKnown RBP-0.23□□□□□ -2.45
CD44-238ENST00000534296 CRYBG1Q9Y4K1 1723 aa-0.23□□□□□ -2.45
CD44-238ENST00000534296 A0A087WVE0 104 aa-0.23□□□□□ -2.45
CD44-238ENST00000534296 A0A0G2JND7 137 aa-0.23□□□□□ -2.45
CD44-238ENST00000534296 H7BZZ5 65 aa-0.23□□□□□ -2.45
CD44-238ENST00000534296 UQCRHP07919 91 aa-0.23□□□□□ -2.45
CD44-238ENST00000534296 CACFD1Q9UGQ2 172 aa-0.23□□□□□ -2.45
CD44-238ENST00000534296 PRXQ9BXM0 1461 aa-0.23□□□□□ -2.45
CD44-238ENST00000534296 IQGAP2Q13576 1575 aa-0.23□□□□□ -2.45
CD44-238ENST00000534296 TMEM218A2RU14 115 aa-0.24□□□□□ -2.45
CD44-238ENST00000534296 H0Y9P7 68 aa-0.24□□□□□ -2.45
CD44-238ENST00000534296 MT-ATP8P03928 68 aa-0.24□□□□□ -2.45
CD44-238ENST00000534296 COX6B2Q6YFQ2 88 aa-0.24□□□□□ -2.45
CD44-238ENST00000534296 TCEAL7Q9BRU2 100 aa-0.24□□□□□ -2.45
CD44-238ENST00000534296 ANKRD36BQ8N2N9 1353 aa-0.24□□□□□ -2.45
CD44-238ENST00000534296 RGPD2P0DJD1 1756 aa-0.24□□□□□ -2.45
CD44-238ENST00000534296 TRAV30A0A087WSZ9 112 aa-0.25□□□□□ -2.45
CD44-238ENST00000534296 ARMS2P0C7Q2 107 aa-0.25□□□□□ -2.45
CD44-238ENST00000534296 DEFB107AQ8IZN7 70 aa-0.25□□□□□ -2.45
CD44-238ENST00000534296 EDC4Q6P2E9 1401 aaKnown RBP-0.25□□□□□ -2.45
CD44-238ENST00000534296 VPS8Q8N3P4 1428 aa-0.25□□□□□ -2.45
CD44-238ENST00000534296 KIF20BQ96Q89 1820 aa-0.26□□□□□ -2.45
CD44-238ENST00000534296 ATP6V1G2-DDX39BF2Z307 99 aa-0.26□□□□□ -2.45
CD44-238ENST00000534296 MPC2O95563 127 aa-0.26□□□□□ -2.45
CD44-238ENST00000534296 LINC00032P0C843 101 aa-0.26□□□□□ -2.45
CD44-238ENST00000534296 PMCHL2Q9BQD1 86 aa-0.26□□□□□ -2.45
CD44-238ENST00000534296 PSENENQ9NZ42 101 aa-0.26□□□□□ -2.45
CD44-238ENST00000534296 TRBV25-1A0A075B6N4 114 aa-0.27□□□□□ -2.45
CD44-238ENST00000534296 CCL22O00626 93 aa-0.27□□□□□ -2.45
CD44-238ENST00000534296 DEFB135Q30KP9 77 aa-0.27□□□□□ -2.45
CD44-238ENST00000534296 HEPN1Q6WQI6 88 aa-0.27□□□□□ -2.45
CD44-238ENST00000534296 SPTY2D1-AS1A0A0U1RR47 76 aa-0.28□□□□□ -2.45
CD44-238ENST00000534296 ATOX1O00244 68 aa-0.28□□□□□ -2.45
CD44-238ENST00000534296 MT1GP13640 62 aa-0.28□□□□□ -2.45
CD44-238ENST00000534296 RBP2P50120 134 aa-0.28□□□□□ -2.45
CD44-238ENST00000534296 COL5A1-AS1Q5SY13 56 aa-0.28□□□□□ -2.45
CD44-238ENST00000534296 ZNF720Q7Z2F6 126 aa-0.28□□□□□ -2.45
CD44-238ENST00000534296 S100A10P60903 97 aa-0.29□□□□□ -2.46
CD44-238ENST00000534296 HMGN3Q15651 99 aa-0.29□□□□□ -2.46
CD44-238ENST00000534296 ALKAL2Q6UX46 152 aa-0.29□□□□□ -2.46
CD44-238ENST00000534296 MT1MQ8N339 61 aa-0.29□□□□□ -2.46
CD44-238ENST00000534296 TRGV9Q99603 122 aa-0.29□□□□□ -2.46
CD44-238ENST00000534296 UQCRHLA0A096LP55 91 aa-0.3□□□□□ -2.46
CD44-238ENST00000534296 H0YAA0 97 aa-0.3□□□□□ -2.46
CD44-238ENST00000534296 ACBD7Q8N6N7 88 aa-0.3□□□□□ -2.46
CD44-238ENST00000534296 PLIN4Q96Q06 1357 aa-0.31□□□□□ -2.46
CD44-238ENST00000534296 ARFGEF2Q9Y6D5 1785 aa-0.31□□□□□ -2.46
CD44-238ENST00000534296 TRBV7-7A0A0K0K1E9 115 aa-0.31□□□□□ -2.46
CD44-238ENST00000534296 D6R8Y8 96 aa-0.31□□□□□ -2.46
CD44-238ENST00000534296 H1FX-AS1Q4G0G2 97 aa-0.31□□□□□ -2.46
CD44-238ENST00000534296 MUSTN1Q8IVN3 82 aa-0.31□□□□□ -2.46
CD44-238ENST00000534296 SERP2Q8N6R1 65 aa-0.31□□□□□ -2.46
CD44-238ENST00000534296 CD163L1Q9NR16 1453 aa-0.32□□□□□ -2.46
CD44-238ENST00000534296 LEPROTL1O95214 131 aa-0.32□□□□□ -2.46
CD44-238ENST00000534296 FAUP35544 74 aaKnown RBP-0.32□□□□□ -2.46
CD44-238ENST00000534296 ETDBQ3ZM63 59 aa-0.32□□□□□ -2.46
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms