RNA–Protein interactions for RNA: ENST00000531858.1

AC055878.1-201, humanhuman

TSL 3 BASIC

Gene AC055878.1, Length 281 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AC055878.1-201ENST00000531858 PRRC2CQ9Y520 2896 aaKnown RBP0.31□□□□□ -2.36
AC055878.1-201ENST00000531858 APC2O95996 2303 aa0.3□□□□□ -2.36
AC055878.1-201ENST00000531858 NDUFA1O15239 70 aa0.3□□□□□ -2.36
AC055878.1-201ENST00000531858 MAP1BP46821 2468 aaKnown RBP0.3□□□□□ -2.36
AC055878.1-201ENST00000531858 MUC5ACP98088 5654 aa0.3□□□□□ -2.36
AC055878.1-201ENST00000531858 IGSF10Q6WRI0 2623 aa0.29□□□□□ -2.36
AC055878.1-201ENST00000531858 SETXQ7Z333 2677 aaKnown RBP0.29□□□□□ -2.36
AC055878.1-201ENST00000531858 M0QZ58 72 aa0.28□□□□□ -2.36
AC055878.1-201ENST00000531858 MDN1Q9NU22 5596 aa0.28□□□□□ -2.36
AC055878.1-201ENST00000531858 WNK1Q9H4A3 2382 aa0.27□□□□□ -2.37
AC055878.1-201ENST00000531858 DDX60Q8IY21 1712 aaKnown RBP0.27□□□□□ -2.37
AC055878.1-201ENST00000531858 CELSR1Q9NYQ6 3014 aa0.26□□□□□ -2.37
AC055878.1-201ENST00000531858 KMT2DO14686 5537 aa0.26□□□□□ -2.37
AC055878.1-201ENST00000531858 MT1AP04731 61 aa0.26□□□□□ -2.37
AC055878.1-201ENST00000531858 TNP1P09430 55 aa0.26□□□□□ -2.37
AC055878.1-201ENST00000531858 KRTAP6-2Q3LI66 62 aa0.26□□□□□ -2.37
AC055878.1-201ENST00000531858 HSPG2P98160 4391 aa0.26□□□□□ -2.37
AC055878.1-201ENST00000531858 SAMD9LQ8IVG5 1584 aa0.26□□□□□ -2.37
AC055878.1-201ENST00000531858 PKD1L2Q7Z442 2459 aa0.25□□□□□ -2.37
AC055878.1-201ENST00000531858 TNRC18O15417 2968 aaPredicted RBP0.24□□□□□ -2.37
AC055878.1-201ENST00000531858 HMCN2Q8NDA2 5059 aa0.24□□□□□ -2.37
AC055878.1-201ENST00000531858 SPRR2EP22531 72 aa0.23□□□□□ -2.37
AC055878.1-201ENST00000531858 DMBT1Q9UGM3 2413 aaPredicted RBP0.23□□□□□ -2.37
AC055878.1-201ENST00000531858 LRP1BQ9NZR2 4599 aa0.22□□□□□ -2.37
AC055878.1-201ENST00000531858 CEP290O15078 2479 aa0.21□□□□□ -2.38
AC055878.1-201ENST00000531858 FLNBO75369 2602 aaKnown RBP0.21□□□□□ -2.38
AC055878.1-201ENST00000531858 CLTCL1P53675 1640 aa0.2□□□□□ -2.38
AC055878.1-201ENST00000531858 DEFB110Q30KQ9 67 aa0.2□□□□□ -2.38
AC055878.1-201ENST00000531858 PKD1P98161 4303 aa0.19□□□□□ -2.38
AC055878.1-201ENST00000531858 NSD1Q96L73 2696 aaPredicted RBP0.19□□□□□ -2.38
AC055878.1-201ENST00000531858 MAST4O15021 2626 aa0.19□□□□□ -2.38
AC055878.1-201ENST00000531858 NBASA2RRP1 2371 aa0.19□□□□□ -2.38
AC055878.1-201ENST00000531858 HECTD4Q9Y4D8 3996 aa0.19□□□□□ -2.38
AC055878.1-201ENST00000531858 SYNE2Q8WXH0 6885 aaKnown RBP0.18□□□□□ -2.38
AC055878.1-201ENST00000531858 TOP2AP11388 1531 aaKnown RBP0.18□□□□□ -2.38
AC055878.1-201ENST00000531858 SONP18583 2426 aaKnown RBP0.17□□□□□ -2.38
AC055878.1-201ENST00000531858 FLNCQ14315 2725 aa0.17□□□□□ -2.38
AC055878.1-201ENST00000531858 SPTBN4Q9H254 2564 aa0.17□□□□□ -2.38
AC055878.1-201ENST00000531858 COL6A3P12111 3177 aa0.16□□□□□ -2.38
AC055878.1-201ENST00000531858 STAB1Q9NY15 2570 aa0.16□□□□□ -2.38
AC055878.1-201ENST00000531858 FSIP2Q5CZC0 6907 aa0.16□□□□□ -2.38
AC055878.1-201ENST00000531858 LRP2P98164 4655 aa0.15□□□□□ -2.39
AC055878.1-201ENST00000531858 SPRR2FQ96RM1 72 aa0.15□□□□□ -2.39
AC055878.1-201ENST00000531858 LYSTQ99698 3801 aa0.15□□□□□ -2.39
AC055878.1-201ENST00000531858 PKHD1P08F94 4074 aa0.14□□□□□ -2.39
AC055878.1-201ENST00000531858 SPRR2GQ9BYE4 73 aa0.13□□□□□ -2.39
AC055878.1-201ENST00000531858 COL7A1Q02388 2944 aa0.13□□□□□ -2.39
AC055878.1-201ENST00000531858 ANK3Q12955 4377 aaKnown RBP0.12□□□□□ -2.39
AC055878.1-201ENST00000531858 VPS13BQ7Z7G8 4022 aa0.11□□□□□ -2.39
AC055878.1-201ENST00000531858 NF1P21359 2839 aa0.11□□□□□ -2.39
AC055878.1-201ENST00000531858 DCHS2Q6V1P9 2916 aa0.1□□□□□ -2.39
AC055878.1-201ENST00000531858 SACSQ9NZJ4 4579 aa0.1□□□□□ -2.39
AC055878.1-201ENST00000531858 MTORP42345 2549 aa0.1□□□□□ -2.39
AC055878.1-201ENST00000531858 FLNAP21333 2647 aaKnown RBP0.1□□□□□ -2.39
AC055878.1-201ENST00000531858 KRTAP8-1Q8IUC2 63 aa0.09□□□□□ -2.4
AC055878.1-201ENST00000531858 SETD2Q9BYW2 2564 aaPredicted RBP0.09□□□□□ -2.4
AC055878.1-201ENST00000531858 CUBNO60494 3623 aa0.08□□□□□ -2.4
AC055878.1-201ENST00000531858 POLR2KP53803 58 aaKnown RBP0.08□□□□□ -2.4
AC055878.1-201ENST00000531858 CLPSL2Q6UWE3 100 aa0.08□□□□□ -2.4
AC055878.1-201ENST00000531858 MACF1Q9UPN3 7388 aaKnown RBP0.08□□□□□ -2.4
AC055878.1-201ENST00000531858 DNAH9Q9NYC9 4486 aa0.08□□□□□ -2.4
AC055878.1-201ENST00000531858 SSPOA2VEC9 5147 aa0.07□□□□□ -2.4
AC055878.1-201ENST00000531858 PKHD1L1Q86WI1 4243 aa0.07□□□□□ -2.4
AC055878.1-201ENST00000531858 DNAH3Q8TD57 4116 aa0.07□□□□□ -2.4
AC055878.1-201ENST00000531858 FAT3Q8TDW7 4589 aa0.06□□□□□ -2.4
AC055878.1-201ENST00000531858 FLGP20930 4061 aaPredicted RBP0.06□□□□□ -2.4
AC055878.1-201ENST00000531858 SVEP1Q4LDE5 3571 aa0.04□□□□□ -2.4
AC055878.1-201ENST00000531858 GCN1Q92616 2671 aaKnown RBP0.03□□□□□ -2.4
AC055878.1-201ENST00000531858 ANKRD11Q6UB99 2663 aaPredicted RBP0.02□□□□□ -2.41
AC055878.1-201ENST00000531858 TENM2Q9NT68 2774 aa0.02□□□□□ -2.41
AC055878.1-201ENST00000531858 ZANQ9Y493 2812 aa0.02□□□□□ -2.41
AC055878.1-201ENST00000531858 ACACAQ13085 2346 aa0.01□□□□□ -2.41
AC055878.1-201ENST00000531858 SPG11Q96JI7 2443 aa0.01□□□□□ -2.41
AC055878.1-201ENST00000531858 ANKHD1Q8IWZ3 2542 aaKnown RBP0.01□□□□□ -2.41
AC055878.1-201ENST00000531858 APOBP04114 4563 aaKnown RBP0□□□□□ -2.41
AC055878.1-201ENST00000531858 SPART-AS1P0CW21 52 aa0□□□□□ -2.41
AC055878.1-201ENST00000531858 KRTAP19-5Q3LI72 72 aa0□□□□□ -2.41
AC055878.1-201ENST00000531858 DMXL1Q9Y485 3027 aa-0□□□□□ -2.41
AC055878.1-201ENST00000531858 ZZEF1O43149 2961 aa-0□□□□□ -2.41
AC055878.1-201ENST00000531858 DNAH2Q9P225 4427 aa-0.01□□□□□ -2.41
AC055878.1-201ENST00000531858 PDZD2O15018 2839 aa-0.01□□□□□ -2.41
AC055878.1-201ENST00000531858 TGP01266 2768 aa-0.01□□□□□ -2.41
AC055878.1-201ENST00000531858 A0A0C4DFX4 3053 aa-0.01□□□□□ -2.41
AC055878.1-201ENST00000531858 TEP1Q99973 2627 aaKnown RBP-0.01□□□□□ -2.41
AC055878.1-201ENST00000531858 EPG5Q9HCE0 2579 aa-0.01□□□□□ -2.41
AC055878.1-201ENST00000531858 TACC2O95359 2948 aa-0.02□□□□□ -2.41
AC055878.1-201ENST00000531858 SRRM2Q9UQ35 2752 aaKnown RBP-0.04□□□□□ -2.42
AC055878.1-201ENST00000531858 STAB2Q8WWQ8 2551 aa-0.04□□□□□ -2.42
AC055878.1-201ENST00000531858 SNRPGP62308 76 aaKnown RBP-0.04□□□□□ -2.42
AC055878.1-201ENST00000531858 DNAH11Q96DT5 4516 aa-0.05□□□□□ -2.42
AC055878.1-201ENST00000531858 ACACBO00763 2458 aa-0.05□□□□□ -2.42
AC055878.1-201ENST00000531858 SMR3BP02814 79 aaPredicted RBP-0.05□□□□□ -2.42
AC055878.1-201ENST00000531858 RANBP2P49792 3224 aaKnown RBP-0.05□□□□□ -2.42
AC055878.1-201ENST00000531858 MAP1AP78559 2803 aaPredicted RBP-0.06□□□□□ -2.42
AC055878.1-201ENST00000531858 FAM186AA6NE01 2351 aa-0.06□□□□□ -2.42
AC055878.1-201ENST00000531858 UTP20O75691 2785 aaKnown RBP-0.06□□□□□ -2.42
AC055878.1-201ENST00000531858 MROH2BQ7Z745 1585 aa-0.06□□□□□ -2.42
AC055878.1-201ENST00000531858 FASNP49327 2511 aaKnown RBP-0.07□□□□□ -2.42
AC055878.1-201ENST00000531858 LRRK2Q5S007 2527 aa-0.08□□□□□ -2.42
AC055878.1-201ENST00000531858 VPS13DQ5THJ4 4388 aa-0.08□□□□□ -2.42
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms