RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 MIR22HGQ0VDD5 57 aa4.38□□□□□ -1.71
LIMCH1-207ENST00000508466 C8orf17Q9NRJ1 99 aa4.38□□□□□ -1.71
LIMCH1-207ENST00000508466 KRTAP1-3Q8IUG1 177 aa4.37□□□□□ -1.71
LIMCH1-207ENST00000508466 DNAH9Q9NYC9 4486 aa4.36□□□□□ -1.71
LIMCH1-207ENST00000508466 CDK2AP2O75956 126 aa4.35□□□□□ -1.71
LIMCH1-207ENST00000508466 FBN3Q75N90 2809 aa4.35□□□□□ -1.71
LIMCH1-207ENST00000508466 PANO1I0J062 215 aa4.34□□□□□ -1.72
LIMCH1-207ENST00000508466 LINC01556Q5JQF7 62 aa4.34□□□□□ -1.72
LIMCH1-207ENST00000508466 Q96NJ1 140 aa4.33□□□□□ -1.72
LIMCH1-207ENST00000508466 MRPL34Q9BQ48 92 aaKnown RBP4.32□□□□□ -1.72
LIMCH1-207ENST00000508466 DNAH10OSP0CZ25 163 aa4.32□□□□□ -1.72
LIMCH1-207ENST00000508466 DNAH7Q8WXX0 4024 aa4.31□□□□□ -1.72
LIMCH1-207ENST00000508466 ACYP2P14621 99 aa4.31□□□□□ -1.72
LIMCH1-207ENST00000508466 CMYA5Q8N3K9 4069 aa4.31□□□□□ -1.72
LIMCH1-207ENST00000508466 A0A1B0GVX0 72 aa4.3□□□□□ -1.72
LIMCH1-207ENST00000508466 UQCR11O14957 56 aa4.3□□□□□ -1.72
LIMCH1-207ENST00000508466 TLX1NBP0CAT3 122 aa4.3□□□□□ -1.72
LIMCH1-207ENST00000508466 SPATA8Q6RVD6 105 aa4.3□□□□□ -1.72
LIMCH1-207ENST00000508466 KRTAP1-5Q9BYS1 174 aa4.3□□□□□ -1.72
LIMCH1-207ENST00000508466 PLA2G2DQ9UNK4 145 aa4.3□□□□□ -1.72
LIMCH1-207ENST00000508466 IGKV2D-30A0A075B6S6 120 aa4.29□□□□□ -1.72
LIMCH1-207ENST00000508466 IGKV2-30P06310 120 aa4.29□□□□□ -1.72
LIMCH1-207ENST00000508466 KRTAP1-1Q07627 177 aa4.29□□□□□ -1.72
LIMCH1-207ENST00000508466 TP53AIP1Q9HCN2 124 aa4.29□□□□□ -1.72
LIMCH1-207ENST00000508466 ALMS1Q8TCU4 4167 aa4.29□□□□□ -1.72
LIMCH1-207ENST00000508466 INAFM1C9JVW0 142 aa4.28□□□□□ -1.72
LIMCH1-207ENST00000508466 ZNF861PO60384 105 aa4.28□□□□□ -1.72
LIMCH1-207ENST00000508466 KRTAP10-11P60412 298 aa4.28□□□□□ -1.72
LIMCH1-207ENST00000508466 LORP23490 312 aaPredicted RBP4.27□□□□□ -1.73
LIMCH1-207ENST00000508466 CIRBP-AS1Q8TBR5 109 aa4.27□□□□□ -1.73
LIMCH1-207ENST00000508466 Q8N1X5 172 aa4.26□□□□□ -1.73
LIMCH1-207ENST00000508466 DNAH1Q9P2D7 4330 aa4.26□□□□□ -1.73
LIMCH1-207ENST00000508466 DNAH17Q9UFH2 4485 aa4.26□□□□□ -1.73
LIMCH1-207ENST00000508466 ROMO1P60602 79 aa4.26□□□□□ -1.73
LIMCH1-207ENST00000508466 P0C880 135 aa4.25□□□□□ -1.73
LIMCH1-207ENST00000508466 SSBP3-AS1Q7Z2R9 100 aa4.24□□□□□ -1.73
LIMCH1-207ENST00000508466 DNAH8Q96JB1 4490 aa4.24□□□□□ -1.73
LIMCH1-207ENST00000508466 DMAC1Q96GE9 116 aa4.23□□□□□ -1.73
LIMCH1-207ENST00000508466 ASB16-AS1Q495Z4 193 aa4.23□□□□□ -1.73
LIMCH1-207ENST00000508466 A8MUU9 505 aa4.21□□□□□ -1.74
LIMCH1-207ENST00000508466 C14orf177Q52M58 125 aa4.21□□□□□ -1.74
LIMCH1-207ENST00000508466 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.21□□□□□ -1.74
LIMCH1-207ENST00000508466 LINC00304Q8N9R0 145 aa4.2□□□□□ -1.74
LIMCH1-207ENST00000508466 KRTAP25-1Q3LHN0 102 aa4.19□□□□□ -1.74
LIMCH1-207ENST00000508466 IGLV5-52A0A0A0MRZ9 124 aa4.19□□□□□ -1.74
LIMCH1-207ENST00000508466 H3BNG1 76 aa4.18□□□□□ -1.74
LIMCH1-207ENST00000508466 SPRR1BP22528 89 aa4.18□□□□□ -1.74
LIMCH1-207ENST00000508466 KRTAP13-3Q3SY46 172 aa4.18□□□□□ -1.74
LIMCH1-207ENST00000508466 UBE2DNLQ8IWF7 75 aa4.18□□□□□ -1.74
LIMCH1-207ENST00000508466 TYMSOSQ8TAI1 123 aa4.17□□□□□ -1.74
LIMCH1-207ENST00000508466 NDUFAF8A1L188 74 aa4.16□□□□□ -1.74
LIMCH1-207ENST00000508466 H0YAA0 97 aa4.16□□□□□ -1.74
LIMCH1-207ENST00000508466 HUWE1Q7Z6Z7 4374 aaKnown RBP4.16□□□□□ -1.74
LIMCH1-207ENST00000508466 SPINT4Q6UDR6 99 aa4.16□□□□□ -1.74
LIMCH1-207ENST00000508466 Q6ZSA8 131 aa4.16□□□□□ -1.74
LIMCH1-207ENST00000508466 WWC2-AS2Q96NR7 200 aa4.16□□□□□ -1.74
LIMCH1-207ENST00000508466 IGLV7-43P04211 117 aa4.15□□□□□ -1.74
LIMCH1-207ENST00000508466 HECTD4Q9Y4D8 3996 aa4.15□□□□□ -1.74
LIMCH1-207ENST00000508466 KMT2AQ03164 3969 aa4.15□□□□□ -1.75
LIMCH1-207ENST00000508466 PSORS1C2Q9UIG4 136 aa4.15□□□□□ -1.75
LIMCH1-207ENST00000508466 PLECQ15149 4684 aaKnown RBP4.14□□□□□ -1.75
LIMCH1-207ENST00000508466 C10orf95Q9H7T3 257 aa4.13□□□□□ -1.75
LIMCH1-207ENST00000508466 KRTAP13-1Q8IUC0 172 aa4.12□□□□□ -1.75
LIMCH1-207ENST00000508466 SPACA4Q8TDM5 124 aa4.11□□□□□ -1.75
LIMCH1-207ENST00000508466 A0A0D9SG42 100 aa4.1□□□□□ -1.75
LIMCH1-207ENST00000508466 KRTAP16-1A8MUX0 517 aa4.1□□□□□ -1.75
LIMCH1-207ENST00000508466 DNAH6Q9C0G6 4158 aa4.09□□□□□ -1.76
LIMCH1-207ENST00000508466 LINC00483Q53H64 154 aa4.08□□□□□ -1.76
LIMCH1-207ENST00000508466 VPS13DQ5THJ4 4388 aa4.08□□□□□ -1.76
LIMCH1-207ENST00000508466 A0A1B0GU33 70 aa4.07□□□□□ -1.76
LIMCH1-207ENST00000508466 A0A0A0MQY5 61 aa4.06□□□□□ -1.76
LIMCH1-207ENST00000508466 DNAH11Q96DT5 4516 aa4.05□□□□□ -1.76
LIMCH1-207ENST00000508466 TPRXLQ17RH7 258 aa4.03□□□□□ -1.76
LIMCH1-207ENST00000508466 DNAH2Q9P225 4427 aa4.03□□□□□ -1.76
LIMCH1-207ENST00000508466 LRP1BQ9NZR2 4599 aa4.01□□□□□ -1.77
LIMCH1-207ENST00000508466 LY6G6CO95867 125 aa4.01□□□□□ -1.77
LIMCH1-207ENST00000508466 C9orf92A6NGG3 77 aa4.01□□□□□ -1.77
LIMCH1-207ENST00000508466 A0A087WTM6 91 aa3.99□□□□□ -1.77
LIMCH1-207ENST00000508466 STARD9Q9P2P6 4700 aa3.99□□□□□ -1.77
LIMCH1-207ENST00000508466 H1FX-AS1Q4G0G2 97 aa3.98□□□□□ -1.77
LIMCH1-207ENST00000508466 C20orf166-AS1Q96NR2 134 aa3.98□□□□□ -1.77
LIMCH1-207ENST00000508466 APLNQ9ULZ1 77 aa3.98□□□□□ -1.77
LIMCH1-207ENST00000508466 FAT2Q9NYQ8 4349 aa3.97□□□□□ -1.77
LIMCH1-207ENST00000508466 NBDYA0A0U1RRE5 68 aa3.97□□□□□ -1.77
LIMCH1-207ENST00000508466 KRTAP24-1Q3LI83 254 aa3.96□□□□□ -1.77
LIMCH1-207ENST00000508466 KRTAP13-2Q52LG2 175 aa3.96□□□□□ -1.77
LIMCH1-207ENST00000508466 COX6B2Q6YFQ2 88 aa3.96□□□□□ -1.78
LIMCH1-207ENST00000508466 K7ERS5 55 aa3.95□□□□□ -1.78
LIMCH1-207ENST00000508466 KRTAP3-1Q9BYR8 98 aa3.95□□□□□ -1.78
LIMCH1-207ENST00000508466 Q6ZRN7 208 aaPredicted RBP3.93□□□□□ -1.78
LIMCH1-207ENST00000508466 VPS13BQ7Z7G8 4022 aa3.92□□□□□ -1.78
LIMCH1-207ENST00000508466 DNAH3Q8TD57 4116 aa3.92□□□□□ -1.78
LIMCH1-207ENST00000508466 KRTAP13-4Q3LI77 160 aa3.92□□□□□ -1.78
LIMCH1-207ENST00000508466 MYCBP2O75592 4640 aa3.91□□□□□ -1.78
LIMCH1-207ENST00000508466 KRTAP15-1Q3LI76 137 aa3.89□□□□□ -1.79
LIMCH1-207ENST00000508466 NUPR2A6NF83 97 aa3.89□□□□□ -1.79
LIMCH1-207ENST00000508466 J3QKU1 62 aa3.87□□□□□ -1.79
LIMCH1-207ENST00000508466 DNAH5Q8TE73 4624 aa3.86□□□□□ -1.79
LIMCH1-207ENST00000508466 KRTAP10-2P60368 255 aa3.86□□□□□ -1.79
LIMCH1-207ENST00000508466 RPL37P61927 97 aaKnown RBP3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 84.6 ms