RNA–Protein interactions for RNA: ENST00000504761.6

TCOF1-207, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 4,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-207ENST00000504761 PMAIP1Q13794 54 aa8.35□□□□□ -1.07
TCOF1-207ENST00000504761 A8MUN3 132 aa8.35□□□□□ -1.07
TCOF1-207ENST00000504761 LINC00483Q53H64 154 aa8.34□□□□□ -1.07
TCOF1-207ENST00000504761 IGLV7-46A0A075B6I9 117 aa8.33□□□□□ -1.08
TCOF1-207ENST00000504761 C1orf195Q5TG92 126 aa8.33□□□□□ -1.08
TCOF1-207ENST00000504761 ZNF469Q96JG9 3925 aaPredicted RBP8.33□□□□□ -1.08
TCOF1-207ENST00000504761 SRRM2Q9UQ35 2752 aaKnown RBP8.31□□□□□ -1.08
TCOF1-207ENST00000504761 Q8N9P0 234 aaPredicted RBP8.29□□□□□ -1.08
TCOF1-207ENST00000504761 KRTAP13-1Q8IUC0 172 aa8.24□□□□□ -1.09
TCOF1-207ENST00000504761 NOTCH2NLQ7Z3S9 236 aa8.24□□□□□ -1.09
TCOF1-207ENST00000504761 COX6B2Q6YFQ2 88 aa8.23□□□□□ -1.09
TCOF1-207ENST00000504761 HRES1P13985 223 aa8.23□□□□□ -1.09
TCOF1-207ENST00000504761 SPANXA2-OT1Q8N9U9 137 aa8.22□□□□□ -1.09
TCOF1-207ENST00000504761 KRTAP13-2Q52LG2 175 aa8.18□□□□□ -1.1
TCOF1-207ENST00000504761 Q5W150 140 aa8.18□□□□□ -1.1
TCOF1-207ENST00000504761 CYP4F30PQ9H0H9 118 aa8.18□□□□□ -1.1
TCOF1-207ENST00000504761 ZCCHC13Q8WW36 166 aaKnown RBP8.17□□□□□ -1.1
TCOF1-207ENST00000504761 PRO0628Q9UI54 55 aa8.17□□□□□ -1.1
TCOF1-207ENST00000504761 KRTAP29-1A8MX34 341 aaPredicted RBP8.15□□□□□ -1.1
TCOF1-207ENST00000504761 Q6ZSA8 131 aa8.14□□□□□ -1.11
TCOF1-207ENST00000504761 FBN3Q75N90 2809 aa8.13□□□□□ -1.11
TCOF1-207ENST00000504761 SPINK7P58062 85 aa8.11□□□□□ -1.11
TCOF1-207ENST00000504761 RBM12B-AS1Q9P1G2 102 aa8.1□□□□□ -1.11
TCOF1-207ENST00000504761 UQCR11O14957 56 aa8.08□□□□□ -1.12
TCOF1-207ENST00000504761 COL7A1Q02388 2944 aa8.05□□□□□ -1.12
TCOF1-207ENST00000504761 MIR22HGQ0VDD5 57 aa8.01□□□□□ -1.13
TCOF1-207ENST00000504761 OXTP01178 125 aa8□□□□□ -1.13
TCOF1-207ENST00000504761 FP248Q71RG6 208 aaPredicted RBP8□□□□□ -1.13
TCOF1-207ENST00000504761 MEGF8Q7Z7M0 2845 aa7.98□□□□□ -1.13
TCOF1-207ENST00000504761 LINC01554Q52M75 96 aa7.98□□□□□ -1.13
TCOF1-207ENST00000504761 A0A0D9SG42 100 aa7.97□□□□□ -1.13
TCOF1-207ENST00000504761 ASB16-AS1Q495Z4 193 aa7.96□□□□□ -1.14
TCOF1-207ENST00000504761 AKAP9Q99996 3911 aa7.95□□□□□ -1.14
TCOF1-207ENST00000504761 Q1T7F1 81 aa7.95□□□□□ -1.14
TCOF1-207ENST00000504761 KRTAP1-4P0C5Y4 121 aa7.94□□□□□ -1.14
TCOF1-207ENST00000504761 Q5XG85 94 aa7.93□□□□□ -1.14
TCOF1-207ENST00000504761 SPINT4Q6UDR6 99 aa7.86□□□□□ -1.15
TCOF1-207ENST00000504761 DMAC1Q96GE9 116 aa7.86□□□□□ -1.15
TCOF1-207ENST00000504761 SEC61BP60468 96 aaKnown RBP7.85□□□□□ -1.15
TCOF1-207ENST00000504761 RPS29P62273 56 aaKnown RBP7.85□□□□□ -1.15
TCOF1-207ENST00000504761 LINC01558Q9Y6Z2 57 aa7.85□□□□□ -1.15
TCOF1-207ENST00000504761 A0A1B0GU33 70 aa7.84□□□□□ -1.16
TCOF1-207ENST00000504761 S4R3F8 94 aa7.82□□□□□ -1.16
TCOF1-207ENST00000504761 M0R2T5 61 aa7.82□□□□□ -1.16
TCOF1-207ENST00000504761 CDC42SE1Q9NRR8 79 aa7.81□□□□□ -1.16
TCOF1-207ENST00000504761 CSAG1Q6PB30 78 aa7.81□□□□□ -1.16
TCOF1-207ENST00000504761 Q5VV11 94 aa7.8□□□□□ -1.16
TCOF1-207ENST00000504761 CSMD3Q7Z407 3707 aa7.79□□□□□ -1.16
TCOF1-207ENST00000504761 Q75L30 129 aa7.78□□□□□ -1.16
TCOF1-207ENST00000504761 HUWE1Q7Z6Z7 4374 aaKnown RBP7.72□□□□□ -1.17
TCOF1-207ENST00000504761 A0A1B0GVY2 172 aa7.72□□□□□ -1.17
TCOF1-207ENST00000504761 RPL37P61927 97 aaKnown RBP7.67□□□□□ -1.18
TCOF1-207ENST00000504761 A8MUU9 505 aa7.65□□□□□ -1.18
TCOF1-207ENST00000504761 C20orf166-AS1Q96NR2 134 aa7.63□□□□□ -1.19
TCOF1-207ENST00000504761 R4GN34 69 aa7.62□□□□□ -1.19
TCOF1-207ENST00000504761 DNHD1Q96M86 4753 aa7.62□□□□□ -1.19
TCOF1-207ENST00000504761 CRIPTQ9P021 101 aa7.61□□□□□ -1.19
TCOF1-207ENST00000504761 SPATA8Q6RVD6 105 aa7.6□□□□□ -1.19
TCOF1-207ENST00000504761 KTN1-AS1Q86SY8 53 aa7.59□□□□□ -1.19
TCOF1-207ENST00000504761 CAMK2N1Q7Z7J9 78 aa7.58□□□□□ -1.2
TCOF1-207ENST00000504761 XP32Q5T750 250 aa7.57□□□□□ -1.2
TCOF1-207ENST00000504761 ADM2Q7Z4H4 148 aa7.56□□□□□ -1.2
TCOF1-207ENST00000504761 KRTAP16-1A8MUX0 517 aa7.55□□□□□ -1.2
TCOF1-207ENST00000504761 H1FX-AS1Q4G0G2 97 aa7.55□□□□□ -1.2
TCOF1-207ENST00000504761 M0QZ58 72 aa7.52□□□□□ -1.21
TCOF1-207ENST00000504761 LCA10Q71F78 164 aa7.52□□□□□ -1.21
TCOF1-207ENST00000504761 DNAH9Q9NYC9 4486 aa7.51□□□□□ -1.21
TCOF1-207ENST00000504761 PRAC1Q96KF2 57 aa7.5□□□□□ -1.21
TCOF1-207ENST00000504761 A8MU10 97 aa7.49□□□□□ -1.21
TCOF1-207ENST00000504761 KRTAP10-8P60410 259 aa7.49□□□□□ -1.21
TCOF1-207ENST00000504761 KRTAP13-3Q3SY46 172 aa7.42□□□□□ -1.22
TCOF1-207ENST00000504761 PLECQ15149 4684 aaKnown RBP7.4□□□□□ -1.22
TCOF1-207ENST00000504761 TPRXLQ17RH7 258 aa7.38□□□□□ -1.23
TCOF1-207ENST00000504761 PRKDCP78527 4128 aaKnown RBP7.27□□□□□ -1.25
TCOF1-207ENST00000504761 DNAH10Q8IVF4 4471 aa7.26□□□□□ -1.25
TCOF1-207ENST00000504761 ROMO1P60602 79 aa7.24□□□□□ -1.25
TCOF1-207ENST00000504761 DNAH11Q96DT5 4516 aa7.24□□□□□ -1.25
TCOF1-207ENST00000504761 STARD9Q9P2P6 4700 aa7.23□□□□□ -1.25
TCOF1-207ENST00000504761 DNAH5Q8TE73 4624 aa7.22□□□□□ -1.25
TCOF1-207ENST00000504761 DNAH1Q9P2D7 4330 aa7.22□□□□□ -1.25
TCOF1-207ENST00000504761 KRTAP10-4P60372 401 aaPredicted RBP7.17□□□□□ -1.26
TCOF1-207ENST00000504761 KRTAP4-5Q9BYR2 181 aa7.17□□□□□ -1.26
TCOF1-207ENST00000504761 A6NN06 94 aa7.15□□□□□ -1.26
TCOF1-207ENST00000504761 PLAC4Q8WY50 150 aa7.15□□□□□ -1.26
TCOF1-207ENST00000504761 MT1HL1P0DM35 61 aa7.14□□□□□ -1.27
TCOF1-207ENST00000504761 ANK2Q01484 3957 aa7.14□□□□□ -1.27
TCOF1-207ENST00000504761 P0C880 135 aa7.12□□□□□ -1.27
TCOF1-207ENST00000504761 VPS13DQ5THJ4 4388 aa7.09□□□□□ -1.27
TCOF1-207ENST00000504761 H0YAA0 97 aa7.09□□□□□ -1.27
TCOF1-207ENST00000504761 FAT1Q14517 4588 aa7.08□□□□□ -1.28
TCOF1-207ENST00000504761 KRTAP3-1Q9BYR8 98 aa7.07□□□□□ -1.28
TCOF1-207ENST00000504761 KMT2AQ03164 3969 aa7.03□□□□□ -1.28
TCOF1-207ENST00000504761 DYNC1H1Q14204 4646 aaKnown RBP6.99□□□□□ -1.29
TCOF1-207ENST00000504761 ALMS1Q8TCU4 4167 aa6.98□□□□□ -1.29
TCOF1-207ENST00000504761 LRP1BQ9NZR2 4599 aa6.96□□□□□ -1.29
TCOF1-207ENST00000504761 DNAH17Q9UFH2 4485 aa6.95□□□□□ -1.3
TCOF1-207ENST00000504761 LYSTQ99698 3801 aa6.94□□□□□ -1.3
TCOF1-207ENST00000504761 LUZP6Q538Z0 58 aa6.94□□□□□ -1.3
TCOF1-207ENST00000504761 KRTAP10-10P60014 251 aa6.94□□□□□ -1.3
TCOF1-207ENST00000504761 KRTAP25-1Q3LHN0 102 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms