RNA–Protein interactions for RNA: ENST00000492280.5

HMGN1-220, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 2,707 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-220ENST00000492280 TRAV22A0A0B4J277 110 aa7.37□□□□□ -1.23
HMGN1-220ENST00000492280 KRTAP10-1P60331 282 aa7.36□□□□□ -1.23
HMGN1-220ENST00000492280 PCOTHQ58A44 107 aa7.35□□□□□ -1.23
HMGN1-220ENST00000492280 C8orf17Q9NRJ1 99 aa7.35□□□□□ -1.23
HMGN1-220ENST00000492280 LINC00336Q6ZUF6 198 aa7.33□□□□□ -1.24
HMGN1-220ENST00000492280 A0A1B0GVX0 72 aa7.32□□□□□ -1.24
HMGN1-220ENST00000492280 FAT1Q14517 4588 aa7.31□□□□□ -1.24
HMGN1-220ENST00000492280 CDK2AP2O75956 126 aa7.31□□□□□ -1.24
HMGN1-220ENST00000492280 DYNC1H1Q14204 4646 aaKnown RBP7.28□□□□□ -1.24
HMGN1-220ENST00000492280 KRTAP13-2Q52LG2 175 aa7.27□□□□□ -1.25
HMGN1-220ENST00000492280 RETNLBQ9BQ08 111 aa7.26□□□□□ -1.25
HMGN1-220ENST00000492280 ASB16-AS1Q495Z4 193 aa7.25□□□□□ -1.25
HMGN1-220ENST00000492280 PSPHP1O15172 72 aa7.25□□□□□ -1.25
HMGN1-220ENST00000492280 CD164Q04900 197 aa7.25□□□□□ -1.25
HMGN1-220ENST00000492280 MRPL34Q9BQ48 92 aaKnown RBP7.25□□□□□ -1.25
HMGN1-220ENST00000492280 CYP4F30PQ9H0H9 118 aa7.23□□□□□ -1.25
HMGN1-220ENST00000492280 BRK1Q8WUW1 75 aa7.23□□□□□ -1.25
HMGN1-220ENST00000492280 Q5W150 140 aa7.22□□□□□ -1.25
HMGN1-220ENST00000492280 KMT2CQ8NEZ4 4911 aaKnown RBP7.22□□□□□ -1.25
HMGN1-220ENST00000492280 Q6ZSA8 131 aa7.22□□□□□ -1.25
HMGN1-220ENST00000492280 H3BPC8 53 aa7.18□□□□□ -1.26
HMGN1-220ENST00000492280 KRTAP1-4P0C5Y4 121 aa7.18□□□□□ -1.26
HMGN1-220ENST00000492280 SMR3BP02814 79 aaPredicted RBP7.17□□□□□ -1.26
HMGN1-220ENST00000492280 TP53AIP1Q9HCN2 124 aa7.17□□□□□ -1.26
HMGN1-220ENST00000492280 SSBP3-AS1Q7Z2R9 100 aa7.16□□□□□ -1.26
HMGN1-220ENST00000492280 APOBP04114 4563 aaKnown RBP7.15□□□□□ -1.26
HMGN1-220ENST00000492280 A8MUN3 132 aa7.15□□□□□ -1.26
HMGN1-220ENST00000492280 COA5Q86WW8 74 aa7.15□□□□□ -1.26
HMGN1-220ENST00000492280 SPANXA2-OT1Q8N9U9 137 aa7.15□□□□□ -1.26
HMGN1-220ENST00000492280 C1orf195Q5TG92 126 aa7.15□□□□□ -1.26
HMGN1-220ENST00000492280 IGLV7-46A0A075B6I9 117 aa7.13□□□□□ -1.27
HMGN1-220ENST00000492280 PLA2G1BP04054 148 aaKnown RBP7.13□□□□□ -1.27
HMGN1-220ENST00000492280 Q8N9P0 234 aaPredicted RBP7.13□□□□□ -1.27
HMGN1-220ENST00000492280 A8MU10 97 aa7.12□□□□□ -1.27
HMGN1-220ENST00000492280 RYR2Q92736 4967 aa7.12□□□□□ -1.27
HMGN1-220ENST00000492280 Q1T7F1 81 aa7.12□□□□□ -1.27
HMGN1-220ENST00000492280 LINC00313P59037 77 aa7.1□□□□□ -1.27
HMGN1-220ENST00000492280 KRTAP13-3Q3SY46 172 aa7.09□□□□□ -1.27
HMGN1-220ENST00000492280 PRO0628Q9UI54 55 aa7.09□□□□□ -1.27
HMGN1-220ENST00000492280 PRR26Q8N8Z3 221 aa7.09□□□□□ -1.27
HMGN1-220ENST00000492280 TYMSOSQ8TAI1 123 aa7.07□□□□□ -1.28
HMGN1-220ENST00000492280 PRR15LQ9BU68 103 aa7.07□□□□□ -1.28
HMGN1-220ENST00000492280 HRES1P13985 223 aa7.07□□□□□ -1.28
HMGN1-220ENST00000492280 SPAG11AQ6PDA7 123 aa7.07□□□□□ -1.28
HMGN1-220ENST00000492280 Q5VV11 94 aa7.05□□□□□ -1.28
HMGN1-220ENST00000492280 LRP1Q07954 4544 aaKnown RBP7.04□□□□□ -1.28
HMGN1-220ENST00000492280 C8orf87E5RJ46 101 aa7.03□□□□□ -1.28
HMGN1-220ENST00000492280 LOC101927531A0A1B0GV80 90 aa7.03□□□□□ -1.28
HMGN1-220ENST00000492280 KRTAP16-1A8MUX0 517 aa7.02□□□□□ -1.29
HMGN1-220ENST00000492280 C4orf48Q5BLP8 95 aa7.02□□□□□ -1.29
HMGN1-220ENST00000492280 IGKV2D-30A0A075B6S6 120 aa7.01□□□□□ -1.29
HMGN1-220ENST00000492280 IGKV2-30P06310 120 aa7.01□□□□□ -1.29
HMGN1-220ENST00000492280 CHKB-CPT1BH3BT56 60 aa7□□□□□ -1.29
HMGN1-220ENST00000492280 PKHD1L1Q86WI1 4243 aa6.99□□□□□ -1.29
HMGN1-220ENST00000492280 LIMD2Q9BT23 127 aa6.99□□□□□ -1.29
HMGN1-220ENST00000492280 RYR3Q15413 4870 aa6.98□□□□□ -1.29
HMGN1-220ENST00000492280 FLG2Q5D862 2391 aaPredicted RBP6.97□□□□□ -1.29
HMGN1-220ENST00000492280 FAM229AH3BQW9 127 aa6.97□□□□□ -1.29
HMGN1-220ENST00000492280 LINC00304Q8N9R0 145 aa6.97□□□□□ -1.29
HMGN1-220ENST00000492280 MYCBP2O75592 4640 aa6.96□□□□□ -1.3
HMGN1-220ENST00000492280 C9orf92A6NGG3 77 aa6.95□□□□□ -1.3
HMGN1-220ENST00000492280 V9GYY9 64 aa6.95□□□□□ -1.3
HMGN1-220ENST00000492280 A0A1B0GVY2 172 aa6.93□□□□□ -1.3
HMGN1-220ENST00000492280 SPINK1P00995 79 aa6.93□□□□□ -1.3
HMGN1-220ENST00000492280 A6NED7 52 aa6.92□□□□□ -1.3
HMGN1-220ENST00000492280 DMBT1Q9UGM3 2413 aaPredicted RBP6.91□□□□□ -1.3
HMGN1-220ENST00000492280 KRTAP10-4P60372 401 aaPredicted RBP6.89□□□□□ -1.31
HMGN1-220ENST00000492280 LCA10Q71F78 164 aa6.88□□□□□ -1.31
HMGN1-220ENST00000492280 HSPG2P98160 4391 aa6.88□□□□□ -1.31
HMGN1-220ENST00000492280 SPINK7P58062 85 aa6.88□□□□□ -1.31
HMGN1-220ENST00000492280 DMAC1Q96GE9 116 aa6.88□□□□□ -1.31
HMGN1-220ENST00000492280 ACYP2P14621 99 aa6.87□□□□□ -1.31
HMGN1-220ENST00000492280 SPTSSBQ8NFR3 76 aa6.87□□□□□ -1.31
HMGN1-220ENST00000492280 LINC01558Q9Y6Z2 57 aa6.87□□□□□ -1.31
HMGN1-220ENST00000492280 Q75L30 129 aa6.86□□□□□ -1.31
HMGN1-220ENST00000492280 Q8N1X5 172 aa6.86□□□□□ -1.31
HMGN1-220ENST00000492280 KIAA1109Q2LD37 5005 aa6.85□□□□□ -1.31
HMGN1-220ENST00000492280 FAT3Q8TDW7 4589 aa6.84□□□□□ -1.31
HMGN1-220ENST00000492280 C7orf65Q6ZTY9 151 aa6.84□□□□□ -1.31
HMGN1-220ENST00000492280 TNXBP22105 4242 aa6.84□□□□□ -1.32
HMGN1-220ENST00000492280 RYR1P21817 5038 aa6.79□□□□□ -1.32
HMGN1-220ENST00000492280 PMAIP1Q13794 54 aa6.77□□□□□ -1.33
HMGN1-220ENST00000492280 EPPK1P58107 5090 aaKnown RBP6.74□□□□□ -1.33
HMGN1-220ENST00000492280 KRTAP17-1Q9BYP8 105 aa6.74□□□□□ -1.33
HMGN1-220ENST00000492280 RPS29P62273 56 aaKnown RBP6.73□□□□□ -1.33
HMGN1-220ENST00000492280 CDC42SE1Q9NRR8 79 aa6.73□□□□□ -1.33
HMGN1-220ENST00000492280 A0A1B0GU69 56 aa6.72□□□□□ -1.33
HMGN1-220ENST00000492280 Q5VSD8 79 aa6.7□□□□□ -1.34
HMGN1-220ENST00000492280 A8MUU9 505 aa6.69□□□□□ -1.34
HMGN1-220ENST00000492280 C20orf166-AS1Q96NR2 134 aa6.68□□□□□ -1.34
HMGN1-220ENST00000492280 LPAP08519 4548 aa6.66□□□□□ -1.34
HMGN1-220ENST00000492280 ATP11AUNQ6ZP68 121 aa6.65□□□□□ -1.34
HMGN1-220ENST00000492280 KRTAP3-1Q9BYR8 98 aa6.65□□□□□ -1.34
HMGN1-220ENST00000492280 A6NN06 94 aa6.62□□□□□ -1.35
HMGN1-220ENST00000492280 LRP2P98164 4655 aa6.6□□□□□ -1.35
HMGN1-220ENST00000492280 ABCA13Q86UQ4 5058 aa6.58□□□□□ -1.36
HMGN1-220ENST00000492280 KRTAP10-8P60410 259 aa6.57□□□□□ -1.36
HMGN1-220ENST00000492280 MIR22HGQ0VDD5 57 aa6.55□□□□□ -1.36
HMGN1-220ENST00000492280 UQCR11O14957 56 aa6.54□□□□□ -1.36
HMGN1-220ENST00000492280 KTN1-AS1Q86SY8 53 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms