RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 EP300Q09472 2414 aaPredicted RBP1.4□□□□□ -2.19
VPS41-212ENST00000482217 PRRC2CQ9Y520 2896 aaKnown RBP1.4□□□□□ -2.19
VPS41-212ENST00000482217 SMG1Q96Q15 3661 aaKnown RBP1.39□□□□□ -2.19
VPS41-212ENST00000482217 ATMQ13315 3056 aa1.39□□□□□ -2.19
VPS41-212ENST00000482217 BOD1L1Q8NFC6 3051 aa1.39□□□□□ -2.19
VPS41-212ENST00000482217 RELNP78509 3460 aa1.39□□□□□ -2.19
VPS41-212ENST00000482217 DMXL2Q8TDJ6 3036 aa1.39□□□□□ -2.19
VPS41-212ENST00000482217 CEP250Q9BV73 2442 aa1.38□□□□□ -2.19
VPS41-212ENST00000482217 ANK2Q01484 3957 aa1.38□□□□□ -2.19
VPS41-212ENST00000482217 FAM186AA6NE01 2351 aa1.38□□□□□ -2.19
VPS41-212ENST00000482217 ZZEF1O43149 2961 aa1.38□□□□□ -2.19
VPS41-212ENST00000482217 MGAQ8IWI9 3026 aa1.37□□□□□ -2.19
VPS41-212ENST00000482217 RIF1Q5UIP0 2472 aaKnown RBP1.37□□□□□ -2.19
VPS41-212ENST00000482217 KRTAP21-2Q3LI59 83 aa1.37□□□□□ -2.19
VPS41-212ENST00000482217 CACNA1AO00555 2505 aa1.37□□□□□ -2.19
VPS41-212ENST00000482217 ITPR1Q14643 2758 aa1.36□□□□□ -2.19
VPS41-212ENST00000482217 APC2O95996 2303 aa1.36□□□□□ -2.19
VPS41-212ENST00000482217 DEFB131AP59861 70 aa1.36□□□□□ -2.19
VPS41-212ENST00000482217 CEP295Q9C0D2 2601 aa1.36□□□□□ -2.19
VPS41-212ENST00000482217 CSMD3Q7Z407 3707 aa1.36□□□□□ -2.19
VPS41-212ENST00000482217 ANKRD11Q6UB99 2663 aaPredicted RBP1.36□□□□□ -2.19
VPS41-212ENST00000482217 NCOR2Q9Y618 2525 aa1.36□□□□□ -2.19
VPS41-212ENST00000482217 NBEAQ8NFP9 2946 aa1.36□□□□□ -2.19
VPS41-212ENST00000482217 SRRM2Q9UQ35 2752 aaKnown RBP1.35□□□□□ -2.19
VPS41-212ENST00000482217 A8MTW9 85 aa1.35□□□□□ -2.19
VPS41-212ENST00000482217 DEFB108AA8MXU0 73 aa1.35□□□□□ -2.19
VPS41-212ENST00000482217 PIEZO1Q92508 2521 aa1.35□□□□□ -2.19
VPS41-212ENST00000482217 OTOGQ6ZRI0 2925 aa1.35□□□□□ -2.19
VPS41-212ENST00000482217 SPTBN4Q9H254 2564 aa1.34□□□□□ -2.19
VPS41-212ENST00000482217 USP24Q9UPU5 2620 aa1.34□□□□□ -2.19
VPS41-212ENST00000482217 H3BUA1 57 aa1.34□□□□□ -2.19
VPS41-212ENST00000482217 PKD1L2Q7Z442 2459 aa1.34□□□□□ -2.2
VPS41-212ENST00000482217 CHD8Q9HCK8 2581 aa1.34□□□□□ -2.2
VPS41-212ENST00000482217 KALRNO60229 2985 aa1.33□□□□□ -2.2
VPS41-212ENST00000482217 ACACAQ13085 2346 aa1.33□□□□□ -2.2
VPS41-212ENST00000482217 CSMD2Q7Z408 3487 aa1.33□□□□□ -2.2
VPS41-212ENST00000482217 ADGRG4Q8IZF6 3080 aa1.33□□□□□ -2.2
VPS41-212ENST00000482217 CSMD1Q96PZ7 3565 aa1.33□□□□□ -2.2
VPS41-212ENST00000482217 CLPSL2Q6UWE3 100 aa1.33□□□□□ -2.2
VPS41-212ENST00000482217 DEFB108BQ8NET1 73 aa1.33□□□□□ -2.2
VPS41-212ENST00000482217 PRKDCP78527 4128 aaKnown RBP1.33□□□□□ -2.2
VPS41-212ENST00000482217 IGSF10Q6WRI0 2623 aa1.33□□□□□ -2.2
VPS41-212ENST00000482217 VPS13CQ709C8 3753 aa1.32□□□□□ -2.2
VPS41-212ENST00000482217 NBPF19A0A087WUL8 3843 aa1.32□□□□□ -2.2
VPS41-212ENST00000482217 ATRQ13535 2644 aa1.32□□□□□ -2.2
VPS41-212ENST00000482217 DEFB104AQ8WTQ1 72 aa1.32□□□□□ -2.2
VPS41-212ENST00000482217 MAP1BP46821 2468 aaKnown RBP1.32□□□□□ -2.2
VPS41-212ENST00000482217 UBR5O95071 2799 aaPredicted RBP1.32□□□□□ -2.2
VPS41-212ENST00000482217 TLN1Q9Y490 2541 aaKnown RBP1.32□□□□□ -2.2
VPS41-212ENST00000482217 CFAP46Q8IYW2 2715 aa1.31□□□□□ -2.2
VPS41-212ENST00000482217 HMCN1Q96RW7 5635 aa1.31□□□□□ -2.2
VPS41-212ENST00000482217 ACACBO00763 2458 aa1.31□□□□□ -2.2
VPS41-212ENST00000482217 M0QY20 66 aa1.31□□□□□ -2.2
VPS41-212ENST00000482217 KRTAP21-3Q3LHN1 58 aa1.31□□□□□ -2.2
VPS41-212ENST00000482217 SVEP1Q4LDE5 3571 aa1.31□□□□□ -2.2
VPS41-212ENST00000482217 COL12A1Q99715 3063 aa1.31□□□□□ -2.2
VPS41-212ENST00000482217 HRNRQ86YZ3 2850 aaPredicted RBP1.3□□□□□ -2.2
VPS41-212ENST00000482217 FBN2P35556 2912 aa1.3□□□□□ -2.2
VPS41-212ENST00000482217 HELZ2Q9BYK8 2649 aaKnown RBP1.3□□□□□ -2.2
VPS41-212ENST00000482217 SPINK1P00995 79 aa1.3□□□□□ -2.2
VPS41-212ENST00000482217 RPL39P5Q59GN2 51 aa1.3□□□□□ -2.2
VPS41-212ENST00000482217 VWFP04275 2813 aa1.3□□□□□ -2.2
VPS41-212ENST00000482217 DNAH11Q96DT5 4516 aa1.3□□□□□ -2.2
VPS41-212ENST00000482217 ZNF469Q96JG9 3925 aaPredicted RBP1.29□□□□□ -2.2
VPS41-212ENST00000482217 AKAP9Q99996 3911 aa1.29□□□□□ -2.2
VPS41-212ENST00000482217 EPG5Q9HCE0 2579 aa1.29□□□□□ -2.2
VPS41-212ENST00000482217 TENM4Q6N022 2769 aa1.29□□□□□ -2.2
VPS41-212ENST00000482217 LYSTQ99698 3801 aa1.29□□□□□ -2.2
VPS41-212ENST00000482217 AKAP6Q13023 2319 aa1.29□□□□□ -2.2
VPS41-212ENST00000482217 SPTA1P02549 2419 aa1.29□□□□□ -2.2
VPS41-212ENST00000482217 DOPEY1Q5JWR5 2465 aa1.29□□□□□ -2.2
VPS41-212ENST00000482217 ZFYVE26Q68DK2 2539 aa1.29□□□□□ -2.2
VPS41-212ENST00000482217 CHD6Q8TD26 2715 aa1.29□□□□□ -2.2
VPS41-212ENST00000482217 LRBAP50851 2863 aa1.29□□□□□ -2.2
VPS41-212ENST00000482217 DCHS2Q6V1P9 2916 aa1.29□□□□□ -2.2
VPS41-212ENST00000482217 HIVEP3Q5T1R4 2406 aa1.28□□□□□ -2.2
VPS41-212ENST00000482217 ANKHD1Q8IWZ3 2542 aaKnown RBP1.28□□□□□ -2.2
VPS41-212ENST00000482217 CUBNO60494 3623 aa1.28□□□□□ -2.2
VPS41-212ENST00000482217 PRCDQ00LT1 54 aa1.28□□□□□ -2.2
VPS41-212ENST00000482217 ANK3Q12955 4377 aaKnown RBP1.28□□□□□ -2.2
VPS41-212ENST00000482217 USP9XQ93008 2570 aaPredicted RBP1.28□□□□□ -2.2
VPS41-212ENST00000482217 UTP20O75691 2785 aaKnown RBP1.28□□□□□ -2.2
VPS41-212ENST00000482217 FLNCQ14315 2725 aa1.27□□□□□ -2.21
VPS41-212ENST00000482217 VPS13DQ5THJ4 4388 aa1.27□□□□□ -2.21
VPS41-212ENST00000482217 H3BUX3 64 aa1.27□□□□□ -2.21
VPS41-212ENST00000482217 TMEM167AQ8TBQ9 72 aa1.27□□□□□ -2.21
VPS41-212ENST00000482217 TOMM7Q9P0U1 55 aa1.27□□□□□ -2.21
VPS41-212ENST00000482217 CRYBG3Q68DQ2 2970 aa1.27□□□□□ -2.21
VPS41-212ENST00000482217 PDZD2O15018 2839 aa1.27□□□□□ -2.21
VPS41-212ENST00000482217 NBASA2RRP1 2371 aa1.26□□□□□ -2.21
VPS41-212ENST00000482217 APELAP0DMC3 54 aa1.26□□□□□ -2.21
VPS41-212ENST00000482217 SMR3AQ99954 134 aa1.26□□□□□ -2.21
VPS41-212ENST00000482217 HECTD1Q9ULT8 2610 aa1.26□□□□□ -2.21
VPS41-212ENST00000482217 MYO18BQ8IUG5 2567 aa1.26□□□□□ -2.21
VPS41-212ENST00000482217 GCN1Q92616 2671 aaKnown RBP1.25□□□□□ -2.21
VPS41-212ENST00000482217 USP9YO00507 2555 aaPredicted RBP1.25□□□□□ -2.21
VPS41-212ENST00000482217 LRRK2Q5S007 2527 aa1.25□□□□□ -2.21
VPS41-212ENST00000482217 TACC2O95359 2948 aa1.25□□□□□ -2.21
VPS41-212ENST00000482217 APCP25054 2843 aa1.25□□□□□ -2.21
VPS41-212ENST00000482217 FAT2Q9NYQ8 4349 aa1.24□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms