RNA–Protein interactions for RNA: ENST00000478658.1

USF3-202, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 8,461 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-202ENST00000478658 NF1P21359 2839 aa2.39□□□□□ -2.03
USF3-202ENST00000478658 KRTAP10-5P60370 271 aa2.39□□□□□ -2.03
USF3-202ENST00000478658 TNRC18O15417 2968 aaPredicted RBP2.39□□□□□ -2.03
USF3-202ENST00000478658 RYR1P21817 5038 aa2.38□□□□□ -2.03
USF3-202ENST00000478658 HIVEP1P15822 2718 aa2.38□□□□□ -2.03
USF3-202ENST00000478658 DSPP15924 2871 aaKnown RBP2.38□□□□□ -2.03
USF3-202ENST00000478658 SRRM2Q9UQ35 2752 aaKnown RBP2.33□□□□□ -2.04
USF3-202ENST00000478658 LORP23490 312 aaPredicted RBP2.32□□□□□ -2.04
USF3-202ENST00000478658 NIPBLQ6KC79 2804 aaeCLIP2.32□□□□□ -2.04
USF3-202ENST00000478658 UBR4Q5T4S7 5183 aa2.31□□□□□ -2.04
USF3-202ENST00000478658 LAMA1P25391 3075 aa2.29□□□□□ -2.04
USF3-202ENST00000478658 CENPFP49454 3210 aa2.29□□□□□ -2.04
USF3-202ENST00000478658 TENM4Q6N022 2769 aa2.27□□□□□ -2.05
USF3-202ENST00000478658 UTRNP46939 3433 aa2.27□□□□□ -2.05
USF3-202ENST00000478658 RYR2Q92736 4967 aa2.26□□□□□ -2.05
USF3-202ENST00000478658 LRBAP50851 2863 aa2.26□□□□□ -2.05
USF3-202ENST00000478658 BSNQ9UPA5 3926 aa2.25□□□□□ -2.05
USF3-202ENST00000478658 NBEAQ8NFP9 2946 aa2.25□□□□□ -2.05
USF3-202ENST00000478658 DNHD1Q96M86 4753 aa2.22□□□□□ -2.05
USF3-202ENST00000478658 CRYBG3Q68DQ2 2970 aa2.21□□□□□ -2.05
USF3-202ENST00000478658 LCE3AQ5TA76 89 aa2.21□□□□□ -2.05
USF3-202ENST00000478658 ZANQ9Y493 2812 aa2.21□□□□□ -2.06
USF3-202ENST00000478658 ZFHX4Q86UP3 3567 aa2.21□□□□□ -2.06
USF3-202ENST00000478658 KRTAP12-4P60329 112 aa2.2□□□□□ -2.06
USF3-202ENST00000478658 A0A0C4DFX4 3053 aa2.2□□□□□ -2.06
USF3-202ENST00000478658 KRTAP3-2Q9BYR7 98 aa2.2□□□□□ -2.06
USF3-202ENST00000478658 TRANK1O15050 2925 aa2.19□□□□□ -2.06
USF3-202ENST00000478658 PCLOQ9Y6V0 5065 aa2.18□□□□□ -2.06
USF3-202ENST00000478658 KRTAP3-1Q9BYR8 98 aa2.18□□□□□ -2.06
USF3-202ENST00000478658 FRYLO94915 3013 aa2.18□□□□□ -2.06
USF3-202ENST00000478658 MEGF8Q7Z7M0 2845 aa2.17□□□□□ -2.06
USF3-202ENST00000478658 FRYQ5TBA9 3013 aa2.16□□□□□ -2.06
USF3-202ENST00000478658 FBN3Q75N90 2809 aa2.15□□□□□ -2.07
USF3-202ENST00000478658 COL12A1Q99715 3063 aa2.15□□□□□ -2.07
USF3-202ENST00000478658 PKD1L1Q8TDX9 2849 aa2.13□□□□□ -2.07
USF3-202ENST00000478658 CEP350Q5VT06 3117 aa2.13□□□□□ -2.07
USF3-202ENST00000478658 RYR3Q15413 4870 aa2.13□□□□□ -2.07
USF3-202ENST00000478658 C5orf42Q9H799 3197 aa2.12□□□□□ -2.07
USF3-202ENST00000478658 KRTAP10-4P60372 401 aaPredicted RBP2.12□□□□□ -2.07
USF3-202ENST00000478658 COL7A1Q02388 2944 aa2.12□□□□□ -2.07
USF3-202ENST00000478658 WDFY4Q6ZS81 3184 aa2.11□□□□□ -2.07
USF3-202ENST00000478658 CHD7Q9P2D1 2997 aa2.1□□□□□ -2.07
USF3-202ENST00000478658 MT1HL1P0DM35 61 aa2.1□□□□□ -2.07
USF3-202ENST00000478658 CMYA5Q8N3K9 4069 aa2.1□□□□□ -2.07
USF3-202ENST00000478658 LCE3CQ5T5A8 94 aa2.1□□□□□ -2.07
USF3-202ENST00000478658 MXRA5Q9NR99 2828 aa2.1□□□□□ -2.07
USF3-202ENST00000478658 SPRR2FQ96RM1 72 aa2.1□□□□□ -2.07
USF3-202ENST00000478658 VWFP04275 2813 aa2.09□□□□□ -2.08
USF3-202ENST00000478658 CELSR2Q9HCU4 2923 aa2.08□□□□□ -2.08
USF3-202ENST00000478658 CELSR1Q9NYQ6 3014 aa2.08□□□□□ -2.08
USF3-202ENST00000478658 GOLGB1Q14789 3259 aaKnown RBP2.08□□□□□ -2.08
USF3-202ENST00000478658 LAMA2P24043 3122 aaKnown RBP2.07□□□□□ -2.08
USF3-202ENST00000478658 EPPK1P58107 5090 aaKnown RBP2.07□□□□□ -2.08
USF3-202ENST00000478658 ASH1LQ9NR48 2969 aaKnown RBP2.06□□□□□ -2.08
USF3-202ENST00000478658 DNAH12Q6ZR08 3092 aa2.05□□□□□ -2.08
USF3-202ENST00000478658 DMXL2Q8TDJ6 3036 aa2.05□□□□□ -2.08
USF3-202ENST00000478658 LCE2BO14633 110 aa2.05□□□□□ -2.08
USF3-202ENST00000478658 SPRR2EP22531 72 aa2.05□□□□□ -2.08
USF3-202ENST00000478658 SPRR2BP35325 72 aa2.05□□□□□ -2.08
USF3-202ENST00000478658 SPRR2AP35326 72 aa2.05□□□□□ -2.08
USF3-202ENST00000478658 EP400Q96L91 3159 aa2.05□□□□□ -2.08
USF3-202ENST00000478658 ALMS1Q8TCU4 4167 aa2.04□□□□□ -2.08
USF3-202ENST00000478658 KRTAP3-3Q9BYR6 98 aa2.04□□□□□ -2.08
USF3-202ENST00000478658 PCNTO95613 3336 aa2.04□□□□□ -2.08
USF3-202ENST00000478658 SPRR2DP22532 72 aa2.04□□□□□ -2.08
USF3-202ENST00000478658 SPRR2GQ9BYE4 73 aa2.03□□□□□ -2.08
USF3-202ENST00000478658 MKI67P46013 3256 aaKnown RBP2.03□□□□□ -2.09
USF3-202ENST00000478658 DCHS2Q6V1P9 2916 aa2.02□□□□□ -2.09
USF3-202ENST00000478658 MGAQ8IWI9 3026 aa2.01□□□□□ -2.09
USF3-202ENST00000478658 ATMQ13315 3056 aa2.01□□□□□ -2.09
USF3-202ENST00000478658 HYDINQ4G0P3 5121 aa2□□□□□ -2.09
USF3-202ENST00000478658 HUWE1Q7Z6Z7 4374 aaKnown RBP2□□□□□ -2.09
USF3-202ENST00000478658 TRRAPQ9Y4A5 3859 aa1.99□□□□□ -2.09
USF3-202ENST00000478658 BIRC6Q9NR09 4857 aa1.99□□□□□ -2.09
USF3-202ENST00000478658 DNAH3Q8TD57 4116 aa1.98□□□□□ -2.09
USF3-202ENST00000478658 OTOGQ6ZRI0 2925 aa1.98□□□□□ -2.09
USF3-202ENST00000478658 AKAP9Q99996 3911 aa1.97□□□□□ -2.09
USF3-202ENST00000478658 KRTAP17-1Q9BYP8 105 aa1.97□□□□□ -2.09
USF3-202ENST00000478658 LCE3DQ9BYE3 92 aa1.96□□□□□ -2.1
USF3-202ENST00000478658 LCE2CQ5TA81 110 aa1.95□□□□□ -2.1
USF3-202ENST00000478658 ZFHX3Q15911 3703 aa1.95□□□□□ -2.1
USF3-202ENST00000478658 LCE3EQ5T5B0 92 aa1.95□□□□□ -2.1
USF3-202ENST00000478658 KMT2CQ8NEZ4 4911 aaKnown RBP1.95□□□□□ -2.1
USF3-202ENST00000478658 KRTAP19-5Q3LI72 72 aa1.95□□□□□ -2.1
USF3-202ENST00000478658 CFAP54Q96N23 3096 aa1.94□□□□□ -2.1
USF3-202ENST00000478658 PKHD1P08F94 4074 aa1.94□□□□□ -2.1
USF3-202ENST00000478658 EYSQ5T1H1 3165 aa1.94□□□□□ -2.1
USF3-202ENST00000478658 DNAH7Q8WXX0 4024 aa1.93□□□□□ -2.1
USF3-202ENST00000478658 UNC80Q8N2C7 3258 aa1.93□□□□□ -2.1
USF3-202ENST00000478658 XIRP2A4UGR9 3374 aa1.92□□□□□ -2.1
USF3-202ENST00000478658 DNAH1Q9P2D7 4330 aa1.92□□□□□ -2.1
USF3-202ENST00000478658 FBN1P35555 2871 aaKnown RBP1.92□□□□□ -2.1
USF3-202ENST00000478658 HTTP42858 3142 aa1.91□□□□□ -2.1
USF3-202ENST00000478658 TACC2O95359 2948 aa1.91□□□□□ -2.1
USF3-202ENST00000478658 MT1GP13640 62 aa1.91□□□□□ -2.1
USF3-202ENST00000478658 NBPF19A0A087WUL8 3843 aa1.9□□□□□ -2.1
USF3-202ENST00000478658 LCE3BQ5TA77 95 aa1.9□□□□□ -2.1
USF3-202ENST00000478658 ZZEF1O43149 2961 aa1.9□□□□□ -2.11
USF3-202ENST00000478658 FRAS1Q86XX4 4008 aa1.89□□□□□ -2.11
USF3-202ENST00000478658 ABCA13Q86UQ4 5058 aa1.89□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 885.5 ms