RNA–Protein interactions for RNA: ENST00000478658.1

USF3-202, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 8,461 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-202ENST00000478658 PELP1Q8IZL8 1130 aaKnown RBP9.23□□□□□ -0.93
USF3-202ENST00000478658 FAM9AQ8IZU1 332 aaPredicted RBP8.76□□□□□ -1.01
USF3-202ENST00000478658 CCER1Q8TC90 406 aaPredicted RBP8.75□□□□□ -1.01
USF3-202ENST00000478658 YTHDC1Q96MU7 727 aaKnown RBP8.74□□□□□ -1.01
USF3-202ENST00000478658 MYT1Q01538 1121 aa8.59□□□□□ -1.04
USF3-202ENST00000478658 ERICH6Q7L0X2 663 aa8.48□□□□□ -1.05
USF3-202ENST00000478658 APLP2Q06481 763 aa8.25□□□□□ -1.09
USF3-202ENST00000478658 DAXXQ9UER7 740 aaPredicted RBP8.19□□□□□ -1.1
USF3-202ENST00000478658 TTBK1Q5TCY1 1321 aaPredicted RBP8.15□□□□□ -1.11
USF3-202ENST00000478658 CLSPNQ9HAW4 1339 aa8.12□□□□□ -1.11
USF3-202ENST00000478658 NEFLP07196 543 aa8.1□□□□□ -1.11
USF3-202ENST00000478658 CENPBP07199 599 aaPredicted RBP8.07□□□□□ -1.12
USF3-202ENST00000478658 DCAF8L2P0C7V8 631 aa8.07□□□□□ -1.12
USF3-202ENST00000478658 NEFMP07197 916 aa8.01□□□□□ -1.13
USF3-202ENST00000478658 ZEB1P37275 1124 aaPredicted RBP7.91□□□□□ -1.14
USF3-202ENST00000478658 ZNF316A6NFI3 1004 aaPredicted RBP7.85□□□□□ -1.15
USF3-202ENST00000478658 RTL5Q5HYW3 569 aaPredicted RBP7.8□□□□□ -1.16
USF3-202ENST00000478658 ZBTB47Q9UFB7 747 aaPredicted RBP7.79□□□□□ -1.16
USF3-202ENST00000478658 CDK11BP21127 795 aaKnown RBP7.77□□□□□ -1.17
USF3-202ENST00000478658 CDK11AQ9UQ88 783 aaPredicted RBP7.77□□□□□ -1.17
USF3-202ENST00000478658 GLIPR1L2Q4G1C9 344 aa7.77□□□□□ -1.17
USF3-202ENST00000478658 ANP32BQ92688 251 aaKnown RBP7.71□□□□□ -1.17
USF3-202ENST00000478658 TRIM26Q12899 539 aaPredicted RBP7.63□□□□□ -1.19
USF3-202ENST00000478658 MYT1LQ9UL68 1186 aa7.56□□□□□ -1.2
USF3-202ENST00000478658 EIF5BO60841 1220 aaKnown RBP7.54□□□□□ -1.2
USF3-202ENST00000478658 TNNT2P45379 298 aaPredicted RBP7.51□□□□□ -1.21
USF3-202ENST00000478658 NISCHQ9Y2I1 1504 aa7.5□□□□□ -1.21
USF3-202ENST00000478658 L1TD1Q5T7N2 865 aaKnown RBP7.47□□□□□ -1.21
USF3-202ENST00000478658 RANGAP1P46060 587 aaPredicted RBP7.46□□□□□ -1.22
USF3-202ENST00000478658 TRIM44Q96DX7 344 aaPredicted RBP7.45□□□□□ -1.22
USF3-202ENST00000478658 POLR3GLQ9BT43 218 aa7.45□□□□□ -1.22
USF3-202ENST00000478658 ATP1B4Q9UN42 357 aaPredicted RBP7.45□□□□□ -1.22
USF3-202ENST00000478658 ANP32EQ9BTT0 268 aa7.44□□□□□ -1.22
USF3-202ENST00000478658 SLC4A1APQ9BWU0 796 aaKnown RBP7.43□□□□□ -1.22
USF3-202ENST00000478658 UPF2Q9HAU5 1272 aaKnown RBP7.41□□□□□ -1.22
USF3-202ENST00000478658 SUPT5HO00267 1087 aaKnown RBP7.41□□□□□ -1.22
USF3-202ENST00000478658 USP35Q9P2H5 1018 aa7.41□□□□□ -1.22
USF3-202ENST00000478658 NCLP19338 710 aaKnown RBP7.37□□□□□ -1.23
USF3-202ENST00000478658 CANXP27824 592 aaKnown RBP7.36□□□□□ -1.23
USF3-202ENST00000478658 HSP90AA1P07900 732 aaKnown RBP7.36□□□□□ -1.23
USF3-202ENST00000478658 GOLGA6L6A8MZA4 724 aa7.35□□□□□ -1.23
USF3-202ENST00000478658 ANO8Q9HCE9 1232 aaPredicted RBP7.33□□□□□ -1.24
USF3-202ENST00000478658 NRDCO43847 1150 aa7.33□□□□□ -1.24
USF3-202ENST00000478658 ANP32AP39687 249 aaKnown RBP7.32□□□□□ -1.24
USF3-202ENST00000478658 ZRSR1Q15695 479 aaKnown RBP7.31□□□□□ -1.24
USF3-202ENST00000478658 NPM2Q86SE8 214 aaKnown RBP7.3□□□□□ -1.24
USF3-202ENST00000478658 PCGF6Q9BYE7 350 aa7.29□□□□□ -1.24
USF3-202ENST00000478658 KRI1Q8N9T8 703 aaKnown RBP7.29□□□□□ -1.24
USF3-202ENST00000478658 SLC24A1O60721 1099 aa7.28□□□□□ -1.24
USF3-202ENST00000478658 UBTFP17480 764 aaKnown RBP7.27□□□□□ -1.25
USF3-202ENST00000478658 CSRNP3Q8WYN3 585 aa7.26□□□□□ -1.25
USF3-202ENST00000478658 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.26□□□□□ -1.25
USF3-202ENST00000478658 HNRNPUL2Q1KMD3 747 aaKnown RBP7.26□□□□□ -1.25
USF3-202ENST00000478658 CALRP27797 417 aaKnown RBP7.25□□□□□ -1.25
USF3-202ENST00000478658 ESF1Q9H501 851 aaKnown RBP7.25□□□□□ -1.25
USF3-202ENST00000478658 CHAF1AQ13111 956 aaPredicted RBP7.24□□□□□ -1.25
USF3-202ENST00000478658 KIAA2012Q0VF49 1180 aa7.23□□□□□ -1.25
USF3-202ENST00000478658 HMGB3O15347 200 aaKnown RBP7.23□□□□□ -1.25
USF3-202ENST00000478658 MYH16Q9H6N6 1097 aa7.22□□□□□ -1.25
USF3-202ENST00000478658 ERICH6BQ5W0A0 696 aa7.22□□□□□ -1.25
USF3-202ENST00000478658 GOLGA6L22H0YM25 854 aa7.21□□□□□ -1.25
USF3-202ENST00000478658 ARID4BQ4LE39 1312 aaPredicted RBP7.2□□□□□ -1.26
USF3-202ENST00000478658 ACIN1Q9UKV3 1341 aaKnown RBP7.2□□□□□ -1.26
USF3-202ENST00000478658 EHMT2Q96KQ7 1210 aa7.2□□□□□ -1.26
USF3-202ENST00000478658 EIF4G2P78344 907 aaKnown RBP eCLIP7.2□□□□□ -1.26
USF3-202ENST00000478658 NEUROD1Q13562 356 aa7.19□□□□□ -1.26
USF3-202ENST00000478658 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.18□□□□□ -1.26
USF3-202ENST00000478658 CASC1Q6TDU7 716 aa7.17□□□□□ -1.26
USF3-202ENST00000478658 BCANQ96GW7 911 aa7.17□□□□□ -1.26
USF3-202ENST00000478658 TRIM41Q8WV44 630 aa7.16□□□□□ -1.26
USF3-202ENST00000478658 CFAP44Q96MT7 982 aa7.14□□□□□ -1.27
USF3-202ENST00000478658 GOLGA6L1Q8N7Z2 621 aa7.14□□□□□ -1.27
USF3-202ENST00000478658 BECN1Q14457 450 aa7.13□□□□□ -1.27
USF3-202ENST00000478658 CHMP4BQ9H444 224 aaKnown RBP7.13□□□□□ -1.27
USF3-202ENST00000478658 GOLGA6L4A6NEF3 574 aa7.12□□□□□ -1.27
USF3-202ENST00000478658 SETQ01105 290 aaPredicted RBP7.12□□□□□ -1.27
USF3-202ENST00000478658 PRM3Q9NNZ6 103 aa7.12□□□□□ -1.27
USF3-202ENST00000478658 ANP32CO43423 234 aa7.11□□□□□ -1.27
USF3-202ENST00000478658 HMGB1P09429 215 aaKnown RBP7.11□□□□□ -1.27
USF3-202ENST00000478658 CCDC34Q96HJ3 373 aa7.11□□□□□ -1.27
USF3-202ENST00000478658 PTMSP20962 102 aa7.11□□□□□ -1.27
USF3-202ENST00000478658 PNNQ9H307 717 aaKnown RBP7.11□□□□□ -1.27
USF3-202ENST00000478658 GOLGA2Q08379 1002 aa7.1□□□□□ -1.27
USF3-202ENST00000478658 ZNF326Q5BKZ1 582 aaKnown RBP7.09□□□□□ -1.27
USF3-202ENST00000478658 NOC3LQ8WTT2 800 aaKnown RBP7.09□□□□□ -1.27
USF3-202ENST00000478658 CHIC1Q5VXU3 224 aa7.09□□□□□ -1.27
USF3-202ENST00000478658 DDRGK1Q96HY6 314 aa7.08□□□□□ -1.28
USF3-202ENST00000478658 HMGB1P1B2RPK0 211 aaPredicted RBP7.05□□□□□ -1.28
USF3-202ENST00000478658 TMX4Q9H1E5 349 aaPredicted RBP7.05□□□□□ -1.28
USF3-202ENST00000478658 FKBP8Q14318 412 aa7.04□□□□□ -1.28
USF3-202ENST00000478658 SEPT11Q9NVA2 429 aaKnown RBP7.04□□□□□ -1.28
USF3-202ENST00000478658 PTMAP06454 111 aaKnown RBP7.03□□□□□ -1.28
USF3-202ENST00000478658 HAP1P54257 671 aaPredicted RBP7.03□□□□□ -1.28
USF3-202ENST00000478658 DIEXFQ68CQ4 756 aaKnown RBP7.03□□□□□ -1.28
USF3-202ENST00000478658 STAG3Q9UJ98 1225 aa7.03□□□□□ -1.28
USF3-202ENST00000478658 CEP89Q96ST8 783 aa7.03□□□□□ -1.28
USF3-202ENST00000478658 TPM4P67936 248 aa7.02□□□□□ -1.28
USF3-202ENST00000478658 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.02□□□□□ -1.28
USF3-202ENST00000478658 PPP4R2Q9NY27 417 aa7.02□□□□□ -1.29
USF3-202ENST00000478658 A0A0U1RQG5 324 aaPredicted RBP7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms