RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 A8MUN3 132 aa3.28□□□□□ -1.88
SYNE1-220ENST00000471834 CDC42SE1Q9NRR8 79 aa3.28□□□□□ -1.88
SYNE1-220ENST00000471834 LAMA5O15230 3695 aa3.28□□□□□ -1.88
SYNE1-220ENST00000471834 STAB1Q9NY15 2570 aa3.27□□□□□ -1.89
SYNE1-220ENST00000471834 MGAM2Q2M2H8 2515 aa3.27□□□□□ -1.89
SYNE1-220ENST00000471834 CRYBG3Q68DQ2 2970 aa3.27□□□□□ -1.89
SYNE1-220ENST00000471834 A0A0D9SG42 100 aa3.27□□□□□ -1.89
SYNE1-220ENST00000471834 BSNQ9UPA5 3926 aa3.26□□□□□ -1.89
SYNE1-220ENST00000471834 MIR22HGQ0VDD5 57 aa3.26□□□□□ -1.89
SYNE1-220ENST00000471834 C8orf17Q9NRJ1 99 aa3.25□□□□□ -1.89
SYNE1-220ENST00000471834 PKD1L1Q8TDX9 2849 aa3.25□□□□□ -1.89
SYNE1-220ENST00000471834 PLAC4Q8WY50 150 aa3.25□□□□□ -1.89
SYNE1-220ENST00000471834 A0A1B0GVX0 72 aa3.24□□□□□ -1.89
SYNE1-220ENST00000471834 LINC01554Q52M75 96 aa3.24□□□□□ -1.89
SYNE1-220ENST00000471834 LCE2CQ5TA81 110 aa3.24□□□□□ -1.89
SYNE1-220ENST00000471834 HECTD1Q9ULT8 2610 aa3.24□□□□□ -1.89
SYNE1-220ENST00000471834 Q8N1X5 172 aa3.24□□□□□ -1.89
SYNE1-220ENST00000471834 SVEP1Q4LDE5 3571 aa3.23□□□□□ -1.89
SYNE1-220ENST00000471834 ANK3Q12955 4377 aaKnown RBP3.23□□□□□ -1.89
SYNE1-220ENST00000471834 HRES1P13985 223 aa3.23□□□□□ -1.89
SYNE1-220ENST00000471834 CAMK2N1Q7Z7J9 78 aa3.22□□□□□ -1.89
SYNE1-220ENST00000471834 ZNF861PO60384 105 aa3.22□□□□□ -1.89
SYNE1-220ENST00000471834 A8MU10 97 aa3.21□□□□□ -1.9
SYNE1-220ENST00000471834 SRRM2Q9UQ35 2752 aaKnown RBP3.21□□□□□ -1.9
SYNE1-220ENST00000471834 LCE2BO14633 110 aa3.21□□□□□ -1.9
SYNE1-220ENST00000471834 Q6ZRN7 208 aaPredicted RBP3.21□□□□□ -1.9
SYNE1-220ENST00000471834 SPATA8Q6RVD6 105 aa3.21□□□□□ -1.9
SYNE1-220ENST00000471834 IGLV7-43P04211 117 aa3.2□□□□□ -1.9
SYNE1-220ENST00000471834 DMAC1Q96GE9 116 aa3.2□□□□□ -1.9
SYNE1-220ENST00000471834 UQCR11O14957 56 aa3.2□□□□□ -1.9
SYNE1-220ENST00000471834 CRIPTQ9P021 101 aa3.2□□□□□ -1.9
SYNE1-220ENST00000471834 AKAP9Q99996 3911 aa3.19□□□□□ -1.9
SYNE1-220ENST00000471834 RELNP78509 3460 aa3.18□□□□□ -1.9
SYNE1-220ENST00000471834 DNAH17Q9UFH2 4485 aa3.17□□□□□ -1.9
SYNE1-220ENST00000471834 KRTAP11-1Q8IUC1 163 aa3.17□□□□□ -1.9
SYNE1-220ENST00000471834 COL6A5A8TX70 2615 aa3.16□□□□□ -1.9
SYNE1-220ENST00000471834 PLECQ15149 4684 aaKnown RBP3.16□□□□□ -1.9
SYNE1-220ENST00000471834 KRTAP1-5Q9BYS1 174 aa3.16□□□□□ -1.9
SYNE1-220ENST00000471834 A0A0A0MQY5 61 aa3.15□□□□□ -1.91
SYNE1-220ENST00000471834 CSMD1Q96PZ7 3565 aa3.15□□□□□ -1.91
SYNE1-220ENST00000471834 KRTAP16-1A8MUX0 517 aa3.15□□□□□ -1.91
SYNE1-220ENST00000471834 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP3.14□□□□□ -1.91
SYNE1-220ENST00000471834 S4R3F8 94 aa3.13□□□□□ -1.91
SYNE1-220ENST00000471834 DNAH1Q9P2D7 4330 aa3.12□□□□□ -1.91
SYNE1-220ENST00000471834 CSAG1Q6PB30 78 aa3.11□□□□□ -1.91
SYNE1-220ENST00000471834 TENM2Q9NT68 2774 aa3.1□□□□□ -1.91
SYNE1-220ENST00000471834 Q5W150 140 aa3.1□□□□□ -1.91
SYNE1-220ENST00000471834 VPS13CQ709C8 3753 aa3.1□□□□□ -1.91
SYNE1-220ENST00000471834 LUZP6Q538Z0 58 aa3.1□□□□□ -1.91
SYNE1-220ENST00000471834 SPINK7P58062 85 aa3.09□□□□□ -1.92
SYNE1-220ENST00000471834 TGP01266 2768 aa3.09□□□□□ -1.92
SYNE1-220ENST00000471834 MEGF8Q7Z7M0 2845 aa3.08□□□□□ -1.92
SYNE1-220ENST00000471834 PRAC1Q96KF2 57 aa3.08□□□□□ -1.92
SYNE1-220ENST00000471834 DNAH10Q8IVF4 4471 aa3.07□□□□□ -1.92
SYNE1-220ENST00000471834 NOTCH2NLQ7Z3S9 236 aa3.07□□□□□ -1.92
SYNE1-220ENST00000471834 DYNC2H1Q8NCM8 4307 aaKnown RBP3.06□□□□□ -1.92
SYNE1-220ENST00000471834 VPS13DQ5THJ4 4388 aa3.06□□□□□ -1.92
SYNE1-220ENST00000471834 RPS29P62273 56 aaKnown RBP3.06□□□□□ -1.92
SYNE1-220ENST00000471834 A0A1B0GU33 70 aa3.05□□□□□ -1.92
SYNE1-220ENST00000471834 LCE2AQ5TA79 106 aaPredicted RBP3.05□□□□□ -1.92
SYNE1-220ENST00000471834 PANO1I0J062 215 aa3.05□□□□□ -1.92
SYNE1-220ENST00000471834 LRP1BQ9NZR2 4599 aa3.04□□□□□ -1.92
SYNE1-220ENST00000471834 DNAH3Q8TD57 4116 aa3.04□□□□□ -1.92
SYNE1-220ENST00000471834 DNAH8Q96JB1 4490 aa3.04□□□□□ -1.92
SYNE1-220ENST00000471834 R4GN34 69 aa3.03□□□□□ -1.92
SYNE1-220ENST00000471834 FBN3Q75N90 2809 aa3.03□□□□□ -1.93
SYNE1-220ENST00000471834 NBPF19A0A087WUL8 3843 aa3.02□□□□□ -1.93
SYNE1-220ENST00000471834 RYR1P21817 5038 aa3.02□□□□□ -1.93
SYNE1-220ENST00000471834 FBN1P35555 2871 aaKnown RBP3.01□□□□□ -1.93
SYNE1-220ENST00000471834 RYR2Q92736 4967 aa3.01□□□□□ -1.93
SYNE1-220ENST00000471834 SACSQ9NZJ4 4579 aa3.01□□□□□ -1.93
SYNE1-220ENST00000471834 DMBT1Q9UGM3 2413 aaPredicted RBP3□□□□□ -1.93
SYNE1-220ENST00000471834 KRTAP1-4P0C5Y4 121 aa3□□□□□ -1.93
SYNE1-220ENST00000471834 STARD9Q9P2P6 4700 aa3□□□□□ -1.93
SYNE1-220ENST00000471834 KRTAP10-1P60331 282 aa2.99□□□□□ -1.93
SYNE1-220ENST00000471834 KRTAP10-2P60368 255 aa2.99□□□□□ -1.93
SYNE1-220ENST00000471834 A8MUU9 505 aa2.99□□□□□ -1.93
SYNE1-220ENST00000471834 ADM2Q7Z4H4 148 aa2.99□□□□□ -1.93
SYNE1-220ENST00000471834 DNAH9Q9NYC9 4486 aa2.99□□□□□ -1.93
SYNE1-220ENST00000471834 CSMD2Q7Z408 3487 aa2.98□□□□□ -1.93
SYNE1-220ENST00000471834 DNAH11Q96DT5 4516 aa2.98□□□□□ -1.93
SYNE1-220ENST00000471834 COL7A1Q02388 2944 aa2.98□□□□□ -1.93
SYNE1-220ENST00000471834 CUBNO60494 3623 aa2.98□□□□□ -1.93
SYNE1-220ENST00000471834 H1FX-AS1Q4G0G2 97 aa2.97□□□□□ -1.93
SYNE1-220ENST00000471834 KRTAP13-2Q52LG2 175 aa2.97□□□□□ -1.93
SYNE1-220ENST00000471834 ROMO1P60602 79 aa2.96□□□□□ -1.94
SYNE1-220ENST00000471834 DNHD1Q96M86 4753 aa2.95□□□□□ -1.94
SYNE1-220ENST00000471834 KIAA1109Q2LD37 5005 aa2.95□□□□□ -1.94
SYNE1-220ENST00000471834 DNAH2Q9P225 4427 aa2.95□□□□□ -1.94
SYNE1-220ENST00000471834 C20orf166-AS1Q96NR2 134 aa2.94□□□□□ -1.94
SYNE1-220ENST00000471834 FLG2Q5D862 2391 aaPredicted RBP2.94□□□□□ -1.94
SYNE1-220ENST00000471834 KRTAP3-1Q9BYR8 98 aa2.94□□□□□ -1.94
SYNE1-220ENST00000471834 M0QZ58 72 aa2.93□□□□□ -1.94
SYNE1-220ENST00000471834 DYNC1H1Q14204 4646 aaKnown RBP2.93□□□□□ -1.94
SYNE1-220ENST00000471834 ZNF469Q96JG9 3925 aaPredicted RBP2.93□□□□□ -1.94
SYNE1-220ENST00000471834 ANK2Q01484 3957 aa2.93□□□□□ -1.94
SYNE1-220ENST00000471834 KRTAP10-4P60372 401 aaPredicted RBP2.9□□□□□ -1.94
SYNE1-220ENST00000471834 H0YAA0 97 aa2.89□□□□□ -1.95
SYNE1-220ENST00000471834 HUWE1Q7Z6Z7 4374 aaKnown RBP2.88□□□□□ -1.95
SYNE1-220ENST00000471834 KRTAP25-1Q3LHN0 102 aa2.88□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms