RNA–Protein interactions for RNA: ENST00000471694.1

CD47-204, Transcript of CD47 molecule, humanhuman

TSL 1 (best)

Gene CD47, Length 6,796 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD47-204ENST00000471694 TRANK1O15050 2925 aa4.31□□□□□ -1.72
CD47-204ENST00000471694 TRIOO75962 3097 aa4.29□□□□□ -1.72
CD47-204ENST00000471694 NDUFAF8A1L188 74 aa4.28□□□□□ -1.72
CD47-204ENST00000471694 LAMA1P25391 3075 aa4.28□□□□□ -1.72
CD47-204ENST00000471694 BRCA2P51587 3418 aa4.26□□□□□ -1.73
CD47-204ENST00000471694 UTP20O75691 2785 aaKnown RBP4.25□□□□□ -1.73
CD47-204ENST00000471694 LAMA2P24043 3122 aaKnown RBP4.24□□□□□ -1.73
CD47-204ENST00000471694 ITPR1Q14643 2758 aa4.24□□□□□ -1.73
CD47-204ENST00000471694 APCP25054 2843 aa4.21□□□□□ -1.74
CD47-204ENST00000471694 CELSR3Q9NYQ7 3312 aa4.21□□□□□ -1.74
CD47-204ENST00000471694 CDH23Q9H251 3354 aa4.2□□□□□ -1.74
CD47-204ENST00000471694 TENM2Q9NT68 2774 aa4.2□□□□□ -1.74
CD47-204ENST00000471694 LRBAP50851 2863 aa4.2□□□□□ -1.74
CD47-204ENST00000471694 COL6A3P12111 3177 aa4.2□□□□□ -1.74
CD47-204ENST00000471694 CRCT1Q9UGL9 99 aa4.18□□□□□ -1.74
CD47-204ENST00000471694 FLNCQ14315 2725 aa4.17□□□□□ -1.74
CD47-204ENST00000471694 H0YAA0 97 aa4.16□□□□□ -1.74
CD47-204ENST00000471694 TACC2O95359 2948 aa4.15□□□□□ -1.74
CD47-204ENST00000471694 EYSQ5T1H1 3165 aa4.15□□□□□ -1.74
CD47-204ENST00000471694 KRTAP15-1Q3LI76 137 aa4.13□□□□□ -1.75
CD47-204ENST00000471694 COL12A1Q99715 3063 aa4.13□□□□□ -1.75
CD47-204ENST00000471694 KRTAP12-2P59991 146 aa4.13□□□□□ -1.75
CD47-204ENST00000471694 TNRC18O15417 2968 aaPredicted RBP4.13□□□□□ -1.75
CD47-204ENST00000471694 VCANP13611 3396 aa4.12□□□□□ -1.75
CD47-204ENST00000471694 TENM1Q9UKZ4 2725 aa4.12□□□□□ -1.75
CD47-204ENST00000471694 USP34Q70CQ2 3546 aa4.11□□□□□ -1.75
CD47-204ENST00000471694 FRYLO94915 3013 aa4.11□□□□□ -1.75
CD47-204ENST00000471694 VPS13AQ96RL7 3174 aa4.1□□□□□ -1.75
CD47-204ENST00000471694 SZT2Q5T011 3432 aa4.1□□□□□ -1.75
CD47-204ENST00000471694 ATMQ13315 3056 aa4.09□□□□□ -1.75
CD47-204ENST00000471694 CFAP47Q6ZTR5 3102 aa4.09□□□□□ -1.75
CD47-204ENST00000471694 NBPF19A0A087WUL8 3843 aa4.07□□□□□ -1.76
CD47-204ENST00000471694 KRTAP4-5Q9BYR2 181 aa4.06□□□□□ -1.76
CD47-204ENST00000471694 SPEGQ15772 3267 aa4.06□□□□□ -1.76
CD47-204ENST00000471694 KALRNO60229 2985 aa4.06□□□□□ -1.76
CD47-204ENST00000471694 DMXL2Q8TDJ6 3036 aa4.06□□□□□ -1.76
CD47-204ENST00000471694 KRTAP13-4Q3LI77 160 aa4.05□□□□□ -1.76
CD47-204ENST00000471694 NBEAQ8NFP9 2946 aa4.02□□□□□ -1.77
CD47-204ENST00000471694 LORP23490 312 aaPredicted RBP4.01□□□□□ -1.77
CD47-204ENST00000471694 SPTBN5Q9NRC6 3674 aaKnown RBP4.01□□□□□ -1.77
CD47-204ENST00000471694 FREM2Q5SZK8 3169 aa4.01□□□□□ -1.77
CD47-204ENST00000471694 DNAH14Q0VDD8 3507 aa4□□□□□ -1.77
CD47-204ENST00000471694 MT1HL1P0DM35 61 aa3.98□□□□□ -1.77
CD47-204ENST00000471694 BOD1L1Q8NFC6 3051 aa3.97□□□□□ -1.77
CD47-204ENST00000471694 CELSR2Q9HCU4 2923 aa3.97□□□□□ -1.77
CD47-204ENST00000471694 TENM3Q9P273 2699 aa3.96□□□□□ -1.77
CD47-204ENST00000471694 ASH1LQ9NR48 2969 aaKnown RBP3.96□□□□□ -1.78
CD47-204ENST00000471694 KRTAP10-12P60413 245 aa3.94□□□□□ -1.78
CD47-204ENST00000471694 DCHS2Q6V1P9 2916 aa3.94□□□□□ -1.78
CD47-204ENST00000471694 NF1P21359 2839 aa3.93□□□□□ -1.78
CD47-204ENST00000471694 KRTAP12-1P59990 96 aa3.92□□□□□ -1.78
CD47-204ENST00000471694 ZZEF1O43149 2961 aa3.92□□□□□ -1.78
CD47-204ENST00000471694 NIPBLQ6KC79 2804 aaeCLIP3.91□□□□□ -1.78
CD47-204ENST00000471694 CELSR1Q9NYQ6 3014 aa3.91□□□□□ -1.78
CD47-204ENST00000471694 ALMS1Q8TCU4 4167 aa3.9□□□□□ -1.78
CD47-204ENST00000471694 DMXL1Q9Y485 3027 aa3.9□□□□□ -1.79
CD47-204ENST00000471694 KRTAP8-1Q8IUC2 63 aa3.89□□□□□ -1.79
CD47-204ENST00000471694 ADGRG4Q8IZF6 3080 aa3.89□□□□□ -1.79
CD47-204ENST00000471694 PKD1L1Q8TDX9 2849 aa3.86□□□□□ -1.79
CD47-204ENST00000471694 ANK3Q12955 4377 aaKnown RBP3.82□□□□□ -1.8
CD47-204ENST00000471694 KRTAP3-1Q9BYR8 98 aa3.81□□□□□ -1.8
CD47-204ENST00000471694 VWFP04275 2813 aa3.81□□□□□ -1.8
CD47-204ENST00000471694 ZANQ9Y493 2812 aa3.8□□□□□ -1.8
CD47-204ENST00000471694 ASPMQ8IZT6 3477 aa3.79□□□□□ -1.8
CD47-204ENST00000471694 TGP01266 2768 aa3.79□□□□□ -1.8
CD47-204ENST00000471694 HRNRQ86YZ3 2850 aaPredicted RBP3.77□□□□□ -1.81
CD47-204ENST00000471694 ZFHX3Q15911 3703 aa3.75□□□□□ -1.81
CD47-204ENST00000471694 PDZD2O15018 2839 aa3.74□□□□□ -1.81
CD47-204ENST00000471694 MXRA5Q9NR99 2828 aa3.74□□□□□ -1.81
CD47-204ENST00000471694 ZFHX4Q86UP3 3567 aa3.74□□□□□ -1.81
CD47-204ENST00000471694 KRTAP10-6P60371 365 aaPredicted RBP3.74□□□□□ -1.81
CD47-204ENST00000471694 WDFY3Q8IZQ1 3526 aa3.73□□□□□ -1.81
CD47-204ENST00000471694 KRTAP12-3P60328 96 aa3.72□□□□□ -1.81
CD47-204ENST00000471694 FBN3Q75N90 2809 aa3.72□□□□□ -1.81
CD47-204ENST00000471694 FBN2P35556 2912 aa3.7□□□□□ -1.82
CD47-204ENST00000471694 HUWE1Q7Z6Z7 4374 aaKnown RBP3.7□□□□□ -1.82
CD47-204ENST00000471694 MYO15AQ9UKN7 3530 aa3.69□□□□□ -1.82
CD47-204ENST00000471694 KRTAP10-4P60372 401 aaPredicted RBP3.68□□□□□ -1.82
CD47-204ENST00000471694 LCE3AQ5TA76 89 aa3.66□□□□□ -1.82
CD47-204ENST00000471694 SPRR2FQ96RM1 72 aa3.66□□□□□ -1.82
CD47-204ENST00000471694 KRTAP10-5P60370 271 aa3.65□□□□□ -1.82
CD47-204ENST00000471694 LOC400499M0QZD8 3231 aa3.65□□□□□ -1.83
CD47-204ENST00000471694 RELNP78509 3460 aa3.64□□□□□ -1.83
CD47-204ENST00000471694 FBN1P35555 2871 aaKnown RBP3.61□□□□□ -1.83
CD47-204ENST00000471694 MT1HP80294 61 aa3.61□□□□□ -1.83
CD47-204ENST00000471694 DCHS1Q96JQ0 3298 aa3.6□□□□□ -1.83
CD47-204ENST00000471694 KRTAP10-7P60409 375 aaPredicted RBP3.6□□□□□ -1.83
CD47-204ENST00000471694 OTOGQ6ZRI0 2925 aa3.57□□□□□ -1.84
CD47-204ENST00000471694 SPRR2EP22531 72 aa3.56□□□□□ -1.84
CD47-204ENST00000471694 SPRR2BP35325 72 aa3.56□□□□□ -1.84
CD47-204ENST00000471694 SPRR2AP35326 72 aa3.56□□□□□ -1.84
CD47-204ENST00000471694 DNAH1Q9P2D7 4330 aa3.56□□□□□ -1.84
CD47-204ENST00000471694 KRTAP3-3Q9BYR6 98 aa3.55□□□□□ -1.84
CD47-204ENST00000471694 DMDP11532 3685 aa3.54□□□□□ -1.84
CD47-204ENST00000471694 KRTAP3-2Q9BYR7 98 aa3.51□□□□□ -1.85
CD47-204ENST00000471694 SPENQ96T58 3664 aaKnown RBP3.51□□□□□ -1.85
CD47-204ENST00000471694 INE1O15225 51 aa3.49□□□□□ -1.85
CD47-204ENST00000471694 LAMA5O15230 3695 aa3.48□□□□□ -1.85
CD47-204ENST00000471694 TRRAPQ9Y4A5 3859 aa3.47□□□□□ -1.85
CD47-204ENST00000471694 SMG1Q96Q15 3661 aaKnown RBP3.47□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms