RNA–Protein interactions for RNA: ENST00000469415.1

MCF2L-221, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 1 (best)

Gene MCF2L, Length 3,027 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-221ENST00000469415 TRAV22A0A0B4J277 110 aa10.63□□□□□ -0.71
MCF2L-221ENST00000469415 ZNF706Q9Y5V0 76 aaPredicted RBP10.63□□□□□ -0.71
MCF2L-221ENST00000469415 IGLV7-43P04211 117 aa10.61□□□□□ -0.71
MCF2L-221ENST00000469415 C8orf17Q9NRJ1 99 aa10.59□□□□□ -0.71
MCF2L-221ENST00000469415 LINC00483Q53H64 154 aa10.59□□□□□ -0.71
MCF2L-221ENST00000469415 HYDINQ4G0P3 5121 aa10.58□□□□□ -0.72
MCF2L-221ENST00000469415 RETNLBQ9BQ08 111 aa10.56□□□□□ -0.72
MCF2L-221ENST00000469415 A0A1B0GVX0 72 aa10.54□□□□□ -0.72
MCF2L-221ENST00000469415 KRTAP10-1P60331 282 aa10.52□□□□□ -0.72
MCF2L-221ENST00000469415 LRP1BQ9NZR2 4599 aa10.52□□□□□ -0.73
MCF2L-221ENST00000469415 CHKB-CPT1BH3BT56 60 aa10.52□□□□□ -0.73
MCF2L-221ENST00000469415 DNAH5Q8TE73 4624 aa10.5□□□□□ -0.73
MCF2L-221ENST00000469415 RBM12B-AS1Q9P1G2 102 aa10.47□□□□□ -0.73
MCF2L-221ENST00000469415 MRPL34Q9BQ48 92 aaKnown RBP10.46□□□□□ -0.73
MCF2L-221ENST00000469415 CD164Q04900 197 aa10.44□□□□□ -0.74
MCF2L-221ENST00000469415 PRR15LQ9BU68 103 aa10.44□□□□□ -0.74
MCF2L-221ENST00000469415 Q1T7F1 81 aa10.42□□□□□ -0.74
MCF2L-221ENST00000469415 CYP4F30PQ9H0H9 118 aa10.42□□□□□ -0.74
MCF2L-221ENST00000469415 Q5VV11 94 aa10.42□□□□□ -0.74
MCF2L-221ENST00000469415 ALMS1Q8TCU4 4167 aa10.41□□□□□ -0.74
MCF2L-221ENST00000469415 Q5W150 140 aa10.41□□□□□ -0.74
MCF2L-221ENST00000469415 KRTAP13-2Q52LG2 175 aa10.39□□□□□ -0.75
MCF2L-221ENST00000469415 TP53AIP1Q9HCN2 124 aa10.37□□□□□ -0.75
MCF2L-221ENST00000469415 H3BPC8 53 aa10.36□□□□□ -0.75
MCF2L-221ENST00000469415 SMR3BP02814 79 aaPredicted RBP10.36□□□□□ -0.75
MCF2L-221ENST00000469415 COA5Q86WW8 74 aa10.36□□□□□ -0.75
MCF2L-221ENST00000469415 A6NED7 52 aa10.36□□□□□ -0.75
MCF2L-221ENST00000469415 ASB16-AS1Q495Z4 193 aa10.34□□□□□ -0.75
MCF2L-221ENST00000469415 LCA10Q71F78 164 aa10.33□□□□□ -0.76
MCF2L-221ENST00000469415 PKHD1P08F94 4074 aa10.31□□□□□ -0.76
MCF2L-221ENST00000469415 SSBP3-AS1Q7Z2R9 100 aa10.31□□□□□ -0.76
MCF2L-221ENST00000469415 SPANXA2-OT1Q8N9U9 137 aa10.31□□□□□ -0.76
MCF2L-221ENST00000469415 VPS13BQ7Z7G8 4022 aa10.31□□□□□ -0.76
MCF2L-221ENST00000469415 Q8N9P0 234 aaPredicted RBP10.31□□□□□ -0.76
MCF2L-221ENST00000469415 PLA2G1BP04054 148 aaKnown RBP10.31□□□□□ -0.76
MCF2L-221ENST00000469415 SPAG11AQ6PDA7 123 aa10.31□□□□□ -0.76
MCF2L-221ENST00000469415 IGLV7-46A0A075B6I9 117 aa10.29□□□□□ -0.76
MCF2L-221ENST00000469415 KTN1-AS1Q86SY8 53 aa10.29□□□□□ -0.76
MCF2L-221ENST00000469415 LINC00313P59037 77 aa10.29□□□□□ -0.76
MCF2L-221ENST00000469415 FAT2Q9NYQ8 4349 aa10.27□□□□□ -0.76
MCF2L-221ENST00000469415 PKD1P98161 4303 aa10.25□□□□□ -0.77
MCF2L-221ENST00000469415 PRAC1Q96KF2 57 aa10.24□□□□□ -0.77
MCF2L-221ENST00000469415 Q6ZSA8 131 aa10.24□□□□□ -0.77
MCF2L-221ENST00000469415 C4orf48Q5BLP8 95 aa10.23□□□□□ -0.77
MCF2L-221ENST00000469415 PRR26Q8N8Z3 221 aa10.23□□□□□ -0.77
MCF2L-221ENST00000469415 KRTAP1-4P0C5Y4 121 aa10.22□□□□□ -0.77
MCF2L-221ENST00000469415 TYMSOSQ8TAI1 123 aa10.22□□□□□ -0.77
MCF2L-221ENST00000469415 HRES1P13985 223 aa10.21□□□□□ -0.77
MCF2L-221ENST00000469415 FAT1Q14517 4588 aa10.19□□□□□ -0.78
MCF2L-221ENST00000469415 IGKV2D-30A0A075B6S6 120 aa10.19□□□□□ -0.78
MCF2L-221ENST00000469415 IGKV2-30P06310 120 aa10.19□□□□□ -0.78
MCF2L-221ENST00000469415 ADM2Q7Z4H4 148 aa10.16□□□□□ -0.78
MCF2L-221ENST00000469415 LOC101927531A0A1B0GV80 90 aa10.15□□□□□ -0.78
MCF2L-221ENST00000469415 C8orf87E5RJ46 101 aa10.12□□□□□ -0.79
MCF2L-221ENST00000469415 A6NN06 94 aa10.11□□□□□ -0.79
MCF2L-221ENST00000469415 SPINK7P58062 85 aa10.11□□□□□ -0.79
MCF2L-221ENST00000469415 SACSQ9NZJ4 4579 aa10.11□□□□□ -0.79
MCF2L-221ENST00000469415 KRTAP13-3Q3SY46 172 aa10.1□□□□□ -0.79
MCF2L-221ENST00000469415 LIMD2Q9BT23 127 aa10.1□□□□□ -0.79
MCF2L-221ENST00000469415 DYNC1H1Q14204 4646 aaKnown RBP10.07□□□□□ -0.8
MCF2L-221ENST00000469415 FAM229AH3BQW9 127 aa10.07□□□□□ -0.8
MCF2L-221ENST00000469415 ATP11AUNQ6ZP68 121 aa10.07□□□□□ -0.8
MCF2L-221ENST00000469415 H3BS24 57 aa10.06□□□□□ -0.8
MCF2L-221ENST00000469415 C9orf92A6NGG3 77 aa10.06□□□□□ -0.8
MCF2L-221ENST00000469415 FLG2Q5D862 2391 aaPredicted RBP10.02□□□□□ -0.81
MCF2L-221ENST00000469415 LINC00304Q8N9R0 145 aa10.02□□□□□ -0.81
MCF2L-221ENST00000469415 KRTAP16-1A8MUX0 517 aa10.01□□□□□ -0.81
MCF2L-221ENST00000469415 C7orf65Q6ZTY9 151 aa10.01□□□□□ -0.81
MCF2L-221ENST00000469415 DMBT1Q9UGM3 2413 aaPredicted RBP10□□□□□ -0.81
MCF2L-221ENST00000469415 SPINK1P00995 79 aa9.99□□□□□ -0.81
MCF2L-221ENST00000469415 ACYP2P14621 99 aa9.99□□□□□ -0.81
MCF2L-221ENST00000469415 Q75L30 129 aa9.97□□□□□ -0.81
MCF2L-221ENST00000469415 KMT2CQ8NEZ4 4911 aaKnown RBP9.97□□□□□ -0.81
MCF2L-221ENST00000469415 Q8N1X5 172 aa9.96□□□□□ -0.82
MCF2L-221ENST00000469415 CDC42SE1Q9NRR8 79 aa9.96□□□□□ -0.82
MCF2L-221ENST00000469415 LINC01558Q9Y6Z2 57 aa9.93□□□□□ -0.82
MCF2L-221ENST00000469415 DMAC1Q96GE9 116 aa9.89□□□□□ -0.83
MCF2L-221ENST00000469415 APOBP04114 4563 aaKnown RBP9.83□□□□□ -0.84
MCF2L-221ENST00000469415 LRP1Q07954 4544 aaKnown RBP9.81□□□□□ -0.84
MCF2L-221ENST00000469415 A0A1B0GU69 56 aa9.8□□□□□ -0.84
MCF2L-221ENST00000469415 A0A1B0GVY2 172 aa9.79□□□□□ -0.84
MCF2L-221ENST00000469415 RYR2Q92736 4967 aa9.78□□□□□ -0.84
MCF2L-221ENST00000469415 KRTAP21-3Q3LHN1 58 aa9.74□□□□□ -0.85
MCF2L-221ENST00000469415 LINC01554Q52M75 96 aa9.74□□□□□ -0.85
MCF2L-221ENST00000469415 MYCBP2O75592 4640 aa9.73□□□□□ -0.85
MCF2L-221ENST00000469415 KRTAP10-4P60372 401 aaPredicted RBP9.72□□□□□ -0.85
MCF2L-221ENST00000469415 CSAG1Q6PB30 78 aa9.66□□□□□ -0.86
MCF2L-221ENST00000469415 KIAA1109Q2LD37 5005 aa9.59□□□□□ -0.87
MCF2L-221ENST00000469415 RYR3Q15413 4870 aa9.58□□□□□ -0.88
MCF2L-221ENST00000469415 PKHD1L1Q86WI1 4243 aa9.58□□□□□ -0.88
MCF2L-221ENST00000469415 RPS29P62273 56 aaKnown RBP9.58□□□□□ -0.88
MCF2L-221ENST00000469415 Q5VSD8 79 aa9.57□□□□□ -0.88
MCF2L-221ENST00000469415 A8MUU9 505 aa9.56□□□□□ -0.88
MCF2L-221ENST00000469415 MIR22HGQ0VDD5 57 aa9.55□□□□□ -0.88
MCF2L-221ENST00000469415 C20orf166-AS1Q96NR2 134 aa9.55□□□□□ -0.88
MCF2L-221ENST00000469415 KRTAP3-1Q9BYR8 98 aa9.53□□□□□ -0.88
MCF2L-221ENST00000469415 UQCR11O14957 56 aa9.52□□□□□ -0.89
MCF2L-221ENST00000469415 KRTAP17-1Q9BYP8 105 aa9.49□□□□□ -0.89
MCF2L-221ENST00000469415 CRIPTQ9P021 101 aa9.49□□□□□ -0.89
MCF2L-221ENST00000469415 FAT3Q8TDW7 4589 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms