RNA–Protein interactions for RNA: ENST00000464541.5

PTCD3-205, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5

Gene PTCD3, Length 890 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-205ENST00000464541 ACANP16112 2415 aa0.61□□□□□ -2.31
PTCD3-205ENST00000464541 SPRR2BP35325 72 aa0.59□□□□□ -2.31
PTCD3-205ENST00000464541 PHGR1C9JFL3 82 aa0.58□□□□□ -2.32
PTCD3-205ENST00000464541 TNP1P09430 55 aa0.58□□□□□ -2.32
PTCD3-205ENST00000464541 HUWE1Q7Z6Z7 4374 aaKnown RBP0.58□□□□□ -2.32
PTCD3-205ENST00000464541 SYNE1Q8NF91 8797 aaKnown RBP0.58□□□□□ -2.32
PTCD3-205ENST00000464541 PRKDCP78527 4128 aaKnown RBP0.57□□□□□ -2.32
PTCD3-205ENST00000464541 UBR5O95071 2799 aaPredicted RBP0.57□□□□□ -2.32
PTCD3-205ENST00000464541 CELSR1Q9NYQ6 3014 aa0.56□□□□□ -2.32
PTCD3-205ENST00000464541 TNRC18O15417 2968 aaPredicted RBP0.56□□□□□ -2.32
PTCD3-205ENST00000464541 SETXQ7Z333 2677 aaKnown RBP0.56□□□□□ -2.32
PTCD3-205ENST00000464541 MDN1Q9NU22 5596 aa0.55□□□□□ -2.32
PTCD3-205ENST00000464541 GPR98Q8WXG9 6306 aa0.55□□□□□ -2.32
PTCD3-205ENST00000464541 DEFB110Q30KQ9 67 aa0.54□□□□□ -2.32
PTCD3-205ENST00000464541 IGSF10Q6WRI0 2623 aa0.54□□□□□ -2.32
PTCD3-205ENST00000464541 POLR2KP53803 58 aaKnown RBP0.53□□□□□ -2.32
PTCD3-205ENST00000464541 LRP1Q07954 4544 aaKnown RBP0.52□□□□□ -2.33
PTCD3-205ENST00000464541 LYSTQ99698 3801 aa0.51□□□□□ -2.33
PTCD3-205ENST00000464541 CACNA1AO00555 2505 aa0.51□□□□□ -2.33
PTCD3-205ENST00000464541 MTORP42345 2549 aa0.51□□□□□ -2.33
PTCD3-205ENST00000464541 CLPSL2Q6UWE3 100 aa0.51□□□□□ -2.33
PTCD3-205ENST00000464541 LPAP08519 4548 aa0.5□□□□□ -2.33
PTCD3-205ENST00000464541 DUOX1Q9NRD9 1551 aa0.5□□□□□ -2.33
PTCD3-205ENST00000464541 FLNBO75369 2602 aaKnown RBP0.5□□□□□ -2.33
PTCD3-205ENST00000464541 MROH2BQ7Z745 1585 aa0.49□□□□□ -2.33
PTCD3-205ENST00000464541 ACACAQ13085 2346 aa0.49□□□□□ -2.33
PTCD3-205ENST00000464541 HRNRQ86YZ3 2850 aaPredicted RBP0.48□□□□□ -2.33
PTCD3-205ENST00000464541 SPTBN4Q9H254 2564 aa0.48□□□□□ -2.33
PTCD3-205ENST00000464541 SPRR2AP35326 72 aa0.48□□□□□ -2.33
PTCD3-205ENST00000464541 RPL39P62891 51 aaKnown RBP0.48□□□□□ -2.33
PTCD3-205ENST00000464541 DMBT1Q9UGM3 2413 aaPredicted RBP0.48□□□□□ -2.33
PTCD3-205ENST00000464541 KMT2AQ03164 3969 aa0.48□□□□□ -2.33
PTCD3-205ENST00000464541 NF1P21359 2839 aa0.47□□□□□ -2.33
PTCD3-205ENST00000464541 MYCBP2O75592 4640 aa0.47□□□□□ -2.33
PTCD3-205ENST00000464541 SRRM2Q9UQ35 2752 aaKnown RBP0.47□□□□□ -2.33
PTCD3-205ENST00000464541 SPART-AS1P0CW21 52 aa0.45□□□□□ -2.34
PTCD3-205ENST00000464541 A0A0C4DFX4 3053 aa0.45□□□□□ -2.34
PTCD3-205ENST00000464541 SONP18583 2426 aaKnown RBP0.45□□□□□ -2.34
PTCD3-205ENST00000464541 NSD1Q96L73 2696 aaPredicted RBP0.44□□□□□ -2.34
PTCD3-205ENST00000464541 SPG11Q96JI7 2443 aa0.44□□□□□ -2.34
PTCD3-205ENST00000464541 FAT4Q6V0I7 4981 aa0.44□□□□□ -2.34
PTCD3-205ENST00000464541 TOMM7Q9P0U1 55 aa0.44□□□□□ -2.34
PTCD3-205ENST00000464541 GCC2Q8IWJ2 1684 aa0.43□□□□□ -2.34
PTCD3-205ENST00000464541 VPS13BQ7Z7G8 4022 aa0.43□□□□□ -2.34
PTCD3-205ENST00000464541 CUBNO60494 3623 aa0.43□□□□□ -2.34
PTCD3-205ENST00000464541 HECTD4Q9Y4D8 3996 aa0.42□□□□□ -2.34
PTCD3-205ENST00000464541 DCHS2Q6V1P9 2916 aa0.42□□□□□ -2.34
PTCD3-205ENST00000464541 MT1AP04731 61 aa0.42□□□□□ -2.34
PTCD3-205ENST00000464541 KMT2DO14686 5537 aa0.42□□□□□ -2.34
PTCD3-205ENST00000464541 GCN1Q92616 2671 aaKnown RBP0.41□□□□□ -2.34
PTCD3-205ENST00000464541 FLNCQ14315 2725 aa0.41□□□□□ -2.34
PTCD3-205ENST00000464541 KRTAP6-2Q3LI66 62 aa0.41□□□□□ -2.34
PTCD3-205ENST00000464541 RPL39LQ96EH5 51 aaKnown RBP0.41□□□□□ -2.34
PTCD3-205ENST00000464541 LRRK2Q5S007 2527 aa0.41□□□□□ -2.34
PTCD3-205ENST00000464541 FAM186AA6NE01 2351 aa0.4□□□□□ -2.34
PTCD3-205ENST00000464541 RIF1Q5UIP0 2472 aaKnown RBP0.4□□□□□ -2.35
PTCD3-205ENST00000464541 SETD2Q9BYW2 2564 aaPredicted RBP0.4□□□□□ -2.35
PTCD3-205ENST00000464541 STAB1Q9NY15 2570 aa0.4□□□□□ -2.35
PTCD3-205ENST00000464541 COL6A5A8TX70 2615 aa0.39□□□□□ -2.35
PTCD3-205ENST00000464541 FLNAP21333 2647 aaKnown RBP0.39□□□□□ -2.35
PTCD3-205ENST00000464541 HSPG2P98160 4391 aa0.39□□□□□ -2.35
PTCD3-205ENST00000464541 ZZEF1O43149 2961 aa0.39□□□□□ -2.35
PTCD3-205ENST00000464541 ANKHD1Q8IWZ3 2542 aaKnown RBP0.38□□□□□ -2.35
PTCD3-205ENST00000464541 COL7A1Q02388 2944 aa0.37□□□□□ -2.35
PTCD3-205ENST00000464541 MAST4O15021 2626 aa0.36□□□□□ -2.35
PTCD3-205ENST00000464541 UTP20O75691 2785 aaKnown RBP0.36□□□□□ -2.35
PTCD3-205ENST00000464541 EPG5Q9HCE0 2579 aa0.36□□□□□ -2.35
PTCD3-205ENST00000464541 SPRR2EP22531 72 aa0.36□□□□□ -2.35
PTCD3-205ENST00000464541 HMCN2Q8NDA2 5059 aa0.36□□□□□ -2.35
PTCD3-205ENST00000464541 DMXL1Q9Y485 3027 aa0.35□□□□□ -2.35
PTCD3-205ENST00000464541 FLGP20930 4061 aaPredicted RBP0.35□□□□□ -2.35
PTCD3-205ENST00000464541 COL6A3P12111 3177 aa0.35□□□□□ -2.35
PTCD3-205ENST00000464541 LEAP2Q969E1 77 aa0.35□□□□□ -2.35
PTCD3-205ENST00000464541 ANKRD11Q6UB99 2663 aaPredicted RBP0.35□□□□□ -2.35
PTCD3-205ENST00000464541 SACSQ9NZJ4 4579 aa0.35□□□□□ -2.35
PTCD3-205ENST00000464541 KRTAP8-1Q8IUC2 63 aa0.34□□□□□ -2.36
PTCD3-205ENST00000464541 DNAH3Q8TD57 4116 aa0.34□□□□□ -2.36
PTCD3-205ENST00000464541 ACACBO00763 2458 aa0.33□□□□□ -2.36
PTCD3-205ENST00000464541 LINC01590Q5TEZ4 76 aa0.33□□□□□ -2.36
PTCD3-205ENST00000464541 PDZD2O15018 2839 aa0.33□□□□□ -2.36
PTCD3-205ENST00000464541 TENM2Q9NT68 2774 aa0.33□□□□□ -2.36
PTCD3-205ENST00000464541 FASNP49327 2511 aaKnown RBP0.32□□□□□ -2.36
PTCD3-205ENST00000464541 LRP1BQ9NZR2 4599 aa0.32□□□□□ -2.36
PTCD3-205ENST00000464541 ARHGAP5-AS1Q96IT6 56 aa0.31□□□□□ -2.36
PTCD3-205ENST00000464541 SPRR2FQ96RM1 72 aa0.31□□□□□ -2.36
PTCD3-205ENST00000464541 PKD1P98161 4303 aa0.31□□□□□ -2.36
PTCD3-205ENST00000464541 SPENQ96T58 3664 aaKnown RBP0.31□□□□□ -2.36
PTCD3-205ENST00000464541 NBEAL2Q6ZNJ1 2754 aa0.3□□□□□ -2.36
PTCD3-205ENST00000464541 TACC2O95359 2948 aa0.3□□□□□ -2.36
PTCD3-205ENST00000464541 SVEP1Q4LDE5 3571 aa0.3□□□□□ -2.36
PTCD3-205ENST00000464541 TGP01266 2768 aa0.3□□□□□ -2.36
PTCD3-205ENST00000464541 ZANQ9Y493 2812 aa0.3□□□□□ -2.36
PTCD3-205ENST00000464541 RANBP2P49792 3224 aaKnown RBP0.29□□□□□ -2.36
PTCD3-205ENST00000464541 ANK3Q12955 4377 aaKnown RBP0.29□□□□□ -2.36
PTCD3-205ENST00000464541 DNAH9Q9NYC9 4486 aa0.28□□□□□ -2.36
PTCD3-205ENST00000464541 NBEAQ8NFP9 2946 aa0.28□□□□□ -2.36
PTCD3-205ENST00000464541 DNAH11Q96DT5 4516 aa0.28□□□□□ -2.36
PTCD3-205ENST00000464541 SYNE2Q8WXH0 6885 aaKnown RBP0.28□□□□□ -2.36
PTCD3-205ENST00000464541 AKAP9Q99996 3911 aa0.28□□□□□ -2.37
PTCD3-205ENST00000464541 COL12A1Q99715 3063 aa0.27□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms