RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 LRBAP50851 2863 aa10.71□□□□□ -0.69
CCDC88B-204ENST00000463837 APCP25054 2843 aa10.69□□□□□ -0.7
CCDC88B-204ENST00000463837 KRTAP13-2Q52LG2 175 aa10.69□□□□□ -0.7
CCDC88B-204ENST00000463837 ITPR2Q14571 2701 aa10.68□□□□□ -0.7
CCDC88B-204ENST00000463837 BOD1L1Q8NFC6 3051 aa10.68□□□□□ -0.7
CCDC88B-204ENST00000463837 COL12A1Q99715 3063 aa10.65□□□□□ -0.7
CCDC88B-204ENST00000463837 PLAC4Q8WY50 150 aa10.65□□□□□ -0.7
CCDC88B-204ENST00000463837 UTP20O75691 2785 aaKnown RBP10.65□□□□□ -0.7
CCDC88B-204ENST00000463837 COL6A3P12111 3177 aa10.64□□□□□ -0.71
CCDC88B-204ENST00000463837 HIVEP1P15822 2718 aa10.6□□□□□ -0.71
CCDC88B-204ENST00000463837 NDUFAF8A1L188 74 aa10.51□□□□□ -0.73
CCDC88B-204ENST00000463837 KMT2BQ9UMN6 2715 aaPredicted RBP10.51□□□□□ -0.73
CCDC88B-204ENST00000463837 A8MUU9 505 aa10.47□□□□□ -0.73
CCDC88B-204ENST00000463837 ZZEF1O43149 2961 aa10.47□□□□□ -0.73
CCDC88B-204ENST00000463837 CFAP47Q6ZTR5 3102 aa10.46□□□□□ -0.73
CCDC88B-204ENST00000463837 CELSR2Q9HCU4 2923 aa10.46□□□□□ -0.74
CCDC88B-204ENST00000463837 TNRC18O15417 2968 aaPredicted RBP10.45□□□□□ -0.74
CCDC88B-204ENST00000463837 C20orf166-AS1Q96NR2 134 aa10.44□□□□□ -0.74
CCDC88B-204ENST00000463837 TENM4Q6N022 2769 aa10.42□□□□□ -0.74
CCDC88B-204ENST00000463837 NIPBLQ6KC79 2804 aaeCLIP10.41□□□□□ -0.74
CCDC88B-204ENST00000463837 REV3LO60673 3130 aa10.41□□□□□ -0.74
CCDC88B-204ENST00000463837 SPTBN5Q9NRC6 3674 aaKnown RBP10.41□□□□□ -0.74
CCDC88B-204ENST00000463837 EYSQ5T1H1 3165 aa10.38□□□□□ -0.75
CCDC88B-204ENST00000463837 SPEGQ15772 3267 aa10.37□□□□□ -0.75
CCDC88B-204ENST00000463837 DMXL1Q9Y485 3027 aa10.32□□□□□ -0.76
CCDC88B-204ENST00000463837 ZANQ9Y493 2812 aa10.31□□□□□ -0.76
CCDC88B-204ENST00000463837 DCHS2Q6V1P9 2916 aa10.28□□□□□ -0.76
CCDC88B-204ENST00000463837 KRTAP1-4P0C5Y4 121 aa10.22□□□□□ -0.77
CCDC88B-204ENST00000463837 USP34Q70CQ2 3546 aa10.2□□□□□ -0.78
CCDC88B-204ENST00000463837 H0YAA0 97 aa10.2□□□□□ -0.78
CCDC88B-204ENST00000463837 C10orf95Q9H7T3 257 aa10.17□□□□□ -0.78
CCDC88B-204ENST00000463837 CRYBG3Q68DQ2 2970 aa10.16□□□□□ -0.78
CCDC88B-204ENST00000463837 LOC400499M0QZD8 3231 aa10.15□□□□□ -0.78
CCDC88B-204ENST00000463837 HRNRQ86YZ3 2850 aaPredicted RBP10.13□□□□□ -0.79
CCDC88B-204ENST00000463837 FBN2P35556 2912 aa10.12□□□□□ -0.79
CCDC88B-204ENST00000463837 PP632Q6XCG6 107 aa10.08□□□□□ -0.8
CCDC88B-204ENST00000463837 TNP1P09430 55 aa10.07□□□□□ -0.8
CCDC88B-204ENST00000463837 KRTAP13-3Q3SY46 172 aa10.04□□□□□ -0.8
CCDC88B-204ENST00000463837 NF1P21359 2839 aa10.04□□□□□ -0.8
CCDC88B-204ENST00000463837 MYO15AQ9UKN7 3530 aa9.98□□□□□ -0.81
CCDC88B-204ENST00000463837 XP32Q5T750 250 aa9.97□□□□□ -0.81
CCDC88B-204ENST00000463837 P0C880 135 aa9.92□□□□□ -0.82
CCDC88B-204ENST00000463837 TENM3Q9P273 2699 aa9.9□□□□□ -0.82
CCDC88B-204ENST00000463837 TPRXLQ17RH7 258 aa9.86□□□□□ -0.83
CCDC88B-204ENST00000463837 TGP01266 2768 aa9.85□□□□□ -0.83
CCDC88B-204ENST00000463837 KRTAP10-8P60410 259 aa9.77□□□□□ -0.85
CCDC88B-204ENST00000463837 TENM1Q9UKZ4 2725 aa9.75□□□□□ -0.85
CCDC88B-204ENST00000463837 MXRA5Q9NR99 2828 aa9.75□□□□□ -0.85
CCDC88B-204ENST00000463837 CELSR1Q9NYQ6 3014 aa9.74□□□□□ -0.85
CCDC88B-204ENST00000463837 RELNP78509 3460 aa9.71□□□□□ -0.85
CCDC88B-204ENST00000463837 A0A1B0GVY2 172 aa9.65□□□□□ -0.86
CCDC88B-204ENST00000463837 DCHS1Q96JQ0 3298 aa9.64□□□□□ -0.87
CCDC88B-204ENST00000463837 WDFY3Q8IZQ1 3526 aa9.62□□□□□ -0.87
CCDC88B-204ENST00000463837 KRTAP10-10P60014 251 aa9.6□□□□□ -0.87
CCDC88B-204ENST00000463837 TENM2Q9NT68 2774 aa9.58□□□□□ -0.88
CCDC88B-204ENST00000463837 PDZD2O15018 2839 aa9.55□□□□□ -0.88
CCDC88B-204ENST00000463837 PRO2289Q9P1D8 64 aa9.55□□□□□ -0.88
CCDC88B-204ENST00000463837 LAMA5O15230 3695 aa9.54□□□□□ -0.88
CCDC88B-204ENST00000463837 KRTAP12-2P59991 146 aa9.48□□□□□ -0.89
CCDC88B-204ENST00000463837 ZFHX4Q86UP3 3567 aa9.46□□□□□ -0.89
CCDC88B-204ENST00000463837 MUC3AQ02505 3323 aa9.46□□□□□ -0.9
CCDC88B-204ENST00000463837 ASPMQ8IZT6 3477 aa9.45□□□□□ -0.9
CCDC88B-204ENST00000463837 PKD1L1Q8TDX9 2849 aa9.44□□□□□ -0.9
CCDC88B-204ENST00000463837 KRTAP3-1Q9BYR8 98 aa9.39□□□□□ -0.91
CCDC88B-204ENST00000463837 CSMD1Q96PZ7 3565 aa9.38□□□□□ -0.91
CCDC88B-204ENST00000463837 DMDP11532 3685 aa9.37□□□□□ -0.91
CCDC88B-204ENST00000463837 VWFP04275 2813 aa9.36□□□□□ -0.91
CCDC88B-204ENST00000463837 KRTAP12-1P59990 96 aa9.36□□□□□ -0.91
CCDC88B-204ENST00000463837 KRTAP13-4Q3LI77 160 aa9.32□□□□□ -0.92
CCDC88B-204ENST00000463837 FBN1P35555 2871 aaKnown RBP9.21□□□□□ -0.93
CCDC88B-204ENST00000463837 KRTAP10-6P60371 365 aaPredicted RBP9.18□□□□□ -0.94
CCDC88B-204ENST00000463837 OTOGQ6ZRI0 2925 aa9.18□□□□□ -0.94
CCDC88B-204ENST00000463837 SMG1Q96Q15 3661 aaKnown RBP9.17□□□□□ -0.94
CCDC88B-204ENST00000463837 NBPF19A0A087WUL8 3843 aa9.14□□□□□ -0.95
CCDC88B-204ENST00000463837 FBN3Q75N90 2809 aa9.04□□□□□ -0.96
CCDC88B-204ENST00000463837 ZFHX3Q15911 3703 aa9.04□□□□□ -0.96
CCDC88B-204ENST00000463837 SVEP1Q4LDE5 3571 aa9.02□□□□□ -0.97
CCDC88B-204ENST00000463837 SRRM2Q9UQ35 2752 aaKnown RBP8.99□□□□□ -0.97
CCDC88B-204ENST00000463837 CUBNO60494 3623 aa8.96□□□□□ -0.97
CCDC88B-204ENST00000463837 MEGF8Q7Z7M0 2845 aa8.93□□□□□ -0.98
CCDC88B-204ENST00000463837 ANK3Q12955 4377 aaKnown RBP8.92□□□□□ -0.98
CCDC88B-204ENST00000463837 KRTAP15-1Q3LI76 137 aa8.92□□□□□ -0.98
CCDC88B-204ENST00000463837 KRTAP3-2Q9BYR7 98 aa8.87□□□□□ -0.99
CCDC88B-204ENST00000463837 CSMD2Q7Z408 3487 aa8.86□□□□□ -0.99
CCDC88B-204ENST00000463837 KRTAP3-3Q9BYR6 98 aa8.83□□□□□ -1
CCDC88B-204ENST00000463837 SPENQ96T58 3664 aaKnown RBP8.82□□□□□ -1
CCDC88B-204ENST00000463837 COL7A1Q02388 2944 aa8.75□□□□□ -1.01
CCDC88B-204ENST00000463837 TRRAPQ9Y4A5 3859 aa8.67□□□□□ -1.02
CCDC88B-204ENST00000463837 INE1O15225 51 aa8.63□□□□□ -1.03
CCDC88B-204ENST00000463837 MT1HL1P0DM35 61 aa8.61□□□□□ -1.03
CCDC88B-204ENST00000463837 BSNQ9UPA5 3926 aa8.61□□□□□ -1.03
CCDC88B-204ENST00000463837 KRTAP10-4P60372 401 aaPredicted RBP8.56□□□□□ -1.04
CCDC88B-204ENST00000463837 KRTAP23-1A1A580 65 aa8.53□□□□□ -1.04
CCDC88B-204ENST00000463837 HUWE1Q7Z6Z7 4374 aaKnown RBP8.43□□□□□ -1.06
CCDC88B-204ENST00000463837 KRTAP4-5Q9BYR2 181 aa8.3□□□□□ -1.08
CCDC88B-204ENST00000463837 KRTAP10-12P60413 245 aa8.29□□□□□ -1.08
CCDC88B-204ENST00000463837 VPS13CQ709C8 3753 aa8.28□□□□□ -1.08
CCDC88B-204ENST00000463837 ALMS1Q8TCU4 4167 aa8.22□□□□□ -1.09
CCDC88B-204ENST00000463837 LORP23490 312 aaPredicted RBP8.17□□□□□ -1.1
CCDC88B-204ENST00000463837 KRTAP12-3P60328 96 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms