RNA–Protein interactions for RNA: ENST00000442461.6

LIN54-202, Transcript of lin-54 DREAM MuvB core complex component, humanhuman

TSL 1 (best) BASIC

Gene LIN54, Length 4,254 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIN54-202ENST00000442461 DCHS1Q96JQ0 3298 aa5.9□□□□□ -1.46
LIN54-202ENST00000442461 SEC61BP60468 96 aaKnown RBP5.89□□□□□ -1.47
LIN54-202ENST00000442461 UBR5O95071 2799 aaPredicted RBP5.89□□□□□ -1.47
LIN54-202ENST00000442461 Q6ZSA8 131 aa5.89□□□□□ -1.47
LIN54-202ENST00000442461 NSD1Q96L73 2696 aaPredicted RBP5.88□□□□□ -1.47
LIN54-202ENST00000442461 ATMQ13315 3056 aa5.88□□□□□ -1.47
LIN54-202ENST00000442461 R4GN34 69 aa5.88□□□□□ -1.47
LIN54-202ENST00000442461 TACC2O95359 2948 aa5.87□□□□□ -1.47
LIN54-202ENST00000442461 APCP25054 2843 aa5.87□□□□□ -1.47
LIN54-202ENST00000442461 SMR3BP02814 79 aaPredicted RBP5.85□□□□□ -1.47
LIN54-202ENST00000442461 ZZEF1O43149 2961 aa5.84□□□□□ -1.47
LIN54-202ENST00000442461 UTP20O75691 2785 aaKnown RBP5.84□□□□□ -1.48
LIN54-202ENST00000442461 ZFHX4Q86UP3 3567 aa5.83□□□□□ -1.48
LIN54-202ENST00000442461 H0YAA0 97 aa5.82□□□□□ -1.48
LIN54-202ENST00000442461 KRTAP13-1Q8IUC0 172 aa5.81□□□□□ -1.48
LIN54-202ENST00000442461 COL12A1Q99715 3063 aa5.8□□□□□ -1.48
LIN54-202ENST00000442461 M0QZ58 72 aa5.79□□□□□ -1.48
LIN54-202ENST00000442461 C10orf95Q9H7T3 257 aa5.78□□□□□ -1.48
LIN54-202ENST00000442461 RELNP78509 3460 aa5.78□□□□□ -1.48
LIN54-202ENST00000442461 PLAC4Q8WY50 150 aa5.77□□□□□ -1.49
LIN54-202ENST00000442461 P0C880 135 aa5.72□□□□□ -1.49
LIN54-202ENST00000442461 FLNCQ14315 2725 aa5.68□□□□□ -1.5
LIN54-202ENST00000442461 HIVEP1P15822 2718 aa5.66□□□□□ -1.5
LIN54-202ENST00000442461 SMG1Q96Q15 3661 aaKnown RBP5.65□□□□□ -1.5
LIN54-202ENST00000442461 CELSR2Q9HCU4 2923 aa5.65□□□□□ -1.5
LIN54-202ENST00000442461 NIPBLQ6KC79 2804 aaeCLIP5.65□□□□□ -1.51
LIN54-202ENST00000442461 IGSF10Q6WRI0 2623 aa5.63□□□□□ -1.51
LIN54-202ENST00000442461 KRTAP13-2Q52LG2 175 aa5.63□□□□□ -1.51
LIN54-202ENST00000442461 RPS29P62273 56 aaKnown RBP5.61□□□□□ -1.51
LIN54-202ENST00000442461 KRTAP13-3Q3SY46 172 aa5.6□□□□□ -1.51
LIN54-202ENST00000442461 CSMD1Q96PZ7 3565 aa5.59□□□□□ -1.51
LIN54-202ENST00000442461 SPENQ96T58 3664 aaKnown RBP5.59□□□□□ -1.51
LIN54-202ENST00000442461 KRTAP10-1P60331 282 aa5.58□□□□□ -1.52
LIN54-202ENST00000442461 CRYBG3Q68DQ2 2970 aa5.58□□□□□ -1.52
LIN54-202ENST00000442461 Q6ZRN7 208 aaPredicted RBP5.57□□□□□ -1.52
LIN54-202ENST00000442461 DCHS2Q6V1P9 2916 aa5.56□□□□□ -1.52
LIN54-202ENST00000442461 KRTAP10-2P60368 255 aa5.56□□□□□ -1.52
LIN54-202ENST00000442461 PP632Q6XCG6 107 aa5.56□□□□□ -1.52
LIN54-202ENST00000442461 KMT2BQ9UMN6 2715 aaPredicted RBP5.56□□□□□ -1.52
LIN54-202ENST00000442461 HRNRQ86YZ3 2850 aaPredicted RBP5.55□□□□□ -1.52
LIN54-202ENST00000442461 ZANQ9Y493 2812 aa5.55□□□□□ -1.52
LIN54-202ENST00000442461 TGP01266 2768 aa5.52□□□□□ -1.53
LIN54-202ENST00000442461 SVEP1Q4LDE5 3571 aa5.52□□□□□ -1.53
LIN54-202ENST00000442461 TPRXLQ17RH7 258 aa5.48□□□□□ -1.53
LIN54-202ENST00000442461 ITPR2Q14571 2701 aa5.48□□□□□ -1.53
LIN54-202ENST00000442461 FBN2P35556 2912 aa5.48□□□□□ -1.53
LIN54-202ENST00000442461 J3QL48 77 aa5.48□□□□□ -1.53
LIN54-202ENST00000442461 KRTAP10-8P60410 259 aa5.47□□□□□ -1.53
LIN54-202ENST00000442461 BSNQ9UPA5 3926 aa5.46□□□□□ -1.54
LIN54-202ENST00000442461 NF1P21359 2839 aa5.46□□□□□ -1.54
LIN54-202ENST00000442461 CELSR1Q9NYQ6 3014 aa5.45□□□□□ -1.54
LIN54-202ENST00000442461 TNP1P09430 55 aa5.45□□□□□ -1.54
LIN54-202ENST00000442461 PDZD2O15018 2839 aa5.39□□□□□ -1.55
LIN54-202ENST00000442461 CSMD2Q7Z408 3487 aa5.35□□□□□ -1.55
LIN54-202ENST00000442461 CUBNO60494 3623 aa5.34□□□□□ -1.55
LIN54-202ENST00000442461 KRTAP15-1Q3LI76 137 aa5.34□□□□□ -1.55
LIN54-202ENST00000442461 KRTAP1-4P0C5Y4 121 aa5.32□□□□□ -1.56
LIN54-202ENST00000442461 MXRA5Q9NR99 2828 aa5.32□□□□□ -1.56
LIN54-202ENST00000442461 M0R2T5 61 aa5.31□□□□□ -1.56
LIN54-202ENST00000442461 TENM3Q9P273 2699 aa5.31□□□□□ -1.56
LIN54-202ENST00000442461 KRTAP12-2P59991 146 aa5.3□□□□□ -1.56
LIN54-202ENST00000442461 Q5VSD8 79 aa5.25□□□□□ -1.57
LIN54-202ENST00000442461 VPS13CQ709C8 3753 aa5.24□□□□□ -1.57
LIN54-202ENST00000442461 KRTAP12-1P59990 96 aa5.23□□□□□ -1.57
LIN54-202ENST00000442461 SRRM2Q9UQ35 2752 aaKnown RBP5.23□□□□□ -1.57
LIN54-202ENST00000442461 TENM4Q6N022 2769 aa5.22□□□□□ -1.57
LIN54-202ENST00000442461 KRTAP3-1Q9BYR8 98 aa5.19□□□□□ -1.58
LIN54-202ENST00000442461 TENM2Q9NT68 2774 aa5.18□□□□□ -1.58
LIN54-202ENST00000442461 NBPF19A0A087WUL8 3843 aa5.18□□□□□ -1.58
LIN54-202ENST00000442461 TENM1Q9UKZ4 2725 aa5.17□□□□□ -1.58
LIN54-202ENST00000442461 ZFHX3Q15911 3703 aa5.15□□□□□ -1.58
LIN54-202ENST00000442461 KRTAP13-4Q3LI77 160 aa5.15□□□□□ -1.58
LIN54-202ENST00000442461 XP32Q5T750 250 aa5.15□□□□□ -1.59
LIN54-202ENST00000442461 KRTAP10-6P60371 365 aaPredicted RBP5.13□□□□□ -1.59
LIN54-202ENST00000442461 PKD1L1Q8TDX9 2849 aa5.12□□□□□ -1.59
LIN54-202ENST00000442461 OTOGQ6ZRI0 2925 aa5.11□□□□□ -1.59
LIN54-202ENST00000442461 PRO2289Q9P1D8 64 aa5.06□□□□□ -1.6
LIN54-202ENST00000442461 VWFP04275 2813 aa5.05□□□□□ -1.6
LIN54-202ENST00000442461 ZNF469Q96JG9 3925 aaPredicted RBP5.04□□□□□ -1.6
LIN54-202ENST00000442461 INE1O15225 51 aa5.04□□□□□ -1.6
LIN54-202ENST00000442461 FBN1P35555 2871 aaKnown RBP4.96□□□□□ -1.61
LIN54-202ENST00000442461 FBN3Q75N90 2809 aa4.95□□□□□ -1.62
LIN54-202ENST00000442461 KRTAP3-2Q9BYR7 98 aa4.94□□□□□ -1.62
LIN54-202ENST00000442461 MEGF8Q7Z7M0 2845 aa4.92□□□□□ -1.62
LIN54-202ENST00000442461 COL7A1Q02388 2944 aa4.91□□□□□ -1.62
LIN54-202ENST00000442461 TRRAPQ9Y4A5 3859 aa4.89□□□□□ -1.63
LIN54-202ENST00000442461 KRTAP3-3Q9BYR6 98 aa4.85□□□□□ -1.63
LIN54-202ENST00000442461 ANK3Q12955 4377 aaKnown RBP4.84□□□□□ -1.63
LIN54-202ENST00000442461 A0A1B0GVY2 172 aa4.84□□□□□ -1.64
LIN54-202ENST00000442461 AKAP9Q99996 3911 aa4.77□□□□□ -1.65
LIN54-202ENST00000442461 KRTAP10-10P60014 251 aa4.66□□□□□ -1.66
LIN54-202ENST00000442461 KRTAP23-1A1A580 65 aa4.64□□□□□ -1.67
LIN54-202ENST00000442461 CSMD3Q7Z407 3707 aa4.52□□□□□ -1.69
LIN54-202ENST00000442461 ANK2Q01484 3957 aa4.44□□□□□ -1.7
LIN54-202ENST00000442461 KRTAP12-3P60328 96 aa4.41□□□□□ -1.7
LIN54-202ENST00000442461 LORP23490 312 aaPredicted RBP4.4□□□□□ -1.71
LIN54-202ENST00000442461 LCE3AQ5TA76 89 aa4.39□□□□□ -1.71
LIN54-202ENST00000442461 HUWE1Q7Z6Z7 4374 aaKnown RBP4.38□□□□□ -1.71
LIN54-202ENST00000442461 KRTAP10-12P60413 245 aa4.37□□□□□ -1.71
LIN54-202ENST00000442461 ALMS1Q8TCU4 4167 aa4.34□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms