RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 H0Y9P7 68 aa5.02□□□□□ -1.61
CD44-208ENST00000428726 MP68P56378 58 aa5.01□□□□□ -1.61
CD44-208ENST00000428726 TRAV22A0A0B4J277 110 aa5□□□□□ -1.61
CD44-208ENST00000428726 SACSQ9NZJ4 4579 aa5□□□□□ -1.61
CD44-208ENST00000428726 LINC00472Q9H8W2 130 aa5□□□□□ -1.61
CD44-208ENST00000428726 ZNF706Q9Y5V0 76 aaPredicted RBP5□□□□□ -1.61
CD44-208ENST00000428726 DMBT1Q9UGM3 2413 aaPredicted RBP5□□□□□ -1.61
CD44-208ENST00000428726 PLAC8Q9NZF1 115 aa4.99□□□□□ -1.61
CD44-208ENST00000428726 LINC00483Q53H64 154 aa4.99□□□□□ -1.61
CD44-208ENST00000428726 A8MWP4 228 aa4.99□□□□□ -1.61
CD44-208ENST00000428726 C1orf195Q5TG92 126 aa4.99□□□□□ -1.61
CD44-208ENST00000428726 PRR15Q8IV56 129 aa4.99□□□□□ -1.61
CD44-208ENST00000428726 SPTSSBQ8NFR3 76 aa4.99□□□□□ -1.61
CD44-208ENST00000428726 ZNF861PO60384 105 aa4.98□□□□□ -1.61
CD44-208ENST00000428726 WWC2-AS2Q96NR7 200 aa4.98□□□□□ -1.61
CD44-208ENST00000428726 KRTAP29-1A8MX34 341 aaPredicted RBP4.97□□□□□ -1.61
CD44-208ENST00000428726 ZCCHC13Q8WW36 166 aaKnown RBP4.97□□□□□ -1.61
CD44-208ENST00000428726 PKD1P98161 4303 aa4.97□□□□□ -1.61
CD44-208ENST00000428726 CHKB-CPT1BH3BT56 60 aa4.96□□□□□ -1.62
CD44-208ENST00000428726 IGLV7-43P04211 117 aa4.96□□□□□ -1.62
CD44-208ENST00000428726 PRR15LQ9BU68 103 aa4.96□□□□□ -1.62
CD44-208ENST00000428726 NDUFB1O75438 58 aa4.95□□□□□ -1.62
CD44-208ENST00000428726 SPAG11AQ6PDA7 123 aa4.94□□□□□ -1.62
CD44-208ENST00000428726 CDK2AP2O75956 126 aa4.94□□□□□ -1.62
CD44-208ENST00000428726 DYNC1H1Q14204 4646 aaKnown RBP4.94□□□□□ -1.62
CD44-208ENST00000428726 MYCBP2O75592 4640 aa4.93□□□□□ -1.62
CD44-208ENST00000428726 Q96NJ1 140 aa4.92□□□□□ -1.62
CD44-208ENST00000428726 MMP24-AS1A0A0U1RRL7 71 aa4.91□□□□□ -1.62
CD44-208ENST00000428726 H3BPC8 53 aa4.91□□□□□ -1.62
CD44-208ENST00000428726 LRP1Q07954 4544 aaKnown RBP4.91□□□□□ -1.62
CD44-208ENST00000428726 PMAIP1Q13794 54 aa4.9□□□□□ -1.62
CD44-208ENST00000428726 A6NED7 52 aa4.89□□□□□ -1.63
CD44-208ENST00000428726 PLA2G1BP04054 148 aaKnown RBP4.89□□□□□ -1.63
CD44-208ENST00000428726 KRTAP13-2Q52LG2 175 aa4.89□□□□□ -1.63
CD44-208ENST00000428726 LCE2BO14633 110 aa4.89□□□□□ -1.63
CD44-208ENST00000428726 CD164Q04900 197 aa4.89□□□□□ -1.63
CD44-208ENST00000428726 Q5VV11 94 aa4.89□□□□□ -1.63
CD44-208ENST00000428726 COA5Q86WW8 74 aa4.89□□□□□ -1.63
CD44-208ENST00000428726 PRR26Q8N8Z3 221 aa4.89□□□□□ -1.63
CD44-208ENST00000428726 V9GYY9 64 aa4.89□□□□□ -1.63
CD44-208ENST00000428726 Q1T7F1 81 aa4.89□□□□□ -1.63
CD44-208ENST00000428726 C8orf17Q9NRJ1 99 aa4.88□□□□□ -1.63
CD44-208ENST00000428726 ASB16-AS1Q495Z4 193 aa4.88□□□□□ -1.63
CD44-208ENST00000428726 Q5W150 140 aa4.88□□□□□ -1.63
CD44-208ENST00000428726 Q8N9P0 234 aaPredicted RBP4.88□□□□□ -1.63
CD44-208ENST00000428726 CYP4F30PQ9H0H9 118 aa4.87□□□□□ -1.63
CD44-208ENST00000428726 TP53AIP1Q9HCN2 124 aa4.87□□□□□ -1.63
CD44-208ENST00000428726 A0A1B0GVX0 72 aa4.87□□□□□ -1.63
CD44-208ENST00000428726 RYR3Q15413 4870 aa4.86□□□□□ -1.63
CD44-208ENST00000428726 LCE2CQ5TA81 110 aa4.86□□□□□ -1.63
CD44-208ENST00000428726 APOBP04114 4563 aaKnown RBP4.86□□□□□ -1.63
CD44-208ENST00000428726 SSBP3-AS1Q7Z2R9 100 aa4.85□□□□□ -1.63
CD44-208ENST00000428726 FAT3Q8TDW7 4589 aa4.85□□□□□ -1.63
CD44-208ENST00000428726 SPANXA2-OT1Q8N9U9 137 aa4.85□□□□□ -1.63
CD44-208ENST00000428726 C9orf92A6NGG3 77 aa4.84□□□□□ -1.63
CD44-208ENST00000428726 Q6ZSA8 131 aa4.83□□□□□ -1.64
CD44-208ENST00000428726 MRPL34Q9BQ48 92 aaKnown RBP4.83□□□□□ -1.64
CD44-208ENST00000428726 KIAA1109Q2LD37 5005 aa4.83□□□□□ -1.64
CD44-208ENST00000428726 LCA10Q71F78 164 aa4.83□□□□□ -1.64
CD44-208ENST00000428726 SEC61GP60059 68 aa4.82□□□□□ -1.64
CD44-208ENST00000428726 KRTAP21-3Q3LHN1 58 aa4.82□□□□□ -1.64
CD44-208ENST00000428726 TYMSOSQ8TAI1 123 aa4.82□□□□□ -1.64
CD44-208ENST00000428726 IGKV2D-30A0A075B6S6 120 aa4.81□□□□□ -1.64
CD44-208ENST00000428726 IGKV2-30P06310 120 aa4.81□□□□□ -1.64
CD44-208ENST00000428726 LCE2AQ5TA79 106 aaPredicted RBP4.81□□□□□ -1.64
CD44-208ENST00000428726 SPINK7P58062 85 aa4.8□□□□□ -1.64
CD44-208ENST00000428726 RYR2Q92736 4967 aa4.8□□□□□ -1.64
CD44-208ENST00000428726 HRES1P13985 223 aa4.8□□□□□ -1.64
CD44-208ENST00000428726 KRTAP1-4P0C5Y4 121 aa4.79□□□□□ -1.64
CD44-208ENST00000428726 IGLV7-46A0A075B6I9 117 aa4.78□□□□□ -1.64
CD44-208ENST00000428726 C8orf87E5RJ46 101 aa4.78□□□□□ -1.64
CD44-208ENST00000428726 LINC00313P59037 77 aa4.78□□□□□ -1.64
CD44-208ENST00000428726 LIMD2Q9BT23 127 aa4.77□□□□□ -1.65
CD44-208ENST00000428726 SPINK1P00995 79 aa4.77□□□□□ -1.65
CD44-208ENST00000428726 A0A0A0MQY5 61 aa4.75□□□□□ -1.65
CD44-208ENST00000428726 EPPK1P58107 5090 aaKnown RBP4.74□□□□□ -1.65
CD44-208ENST00000428726 LOC101927531A0A1B0GV80 90 aa4.73□□□□□ -1.65
CD44-208ENST00000428726 Q8N1X5 172 aa4.72□□□□□ -1.65
CD44-208ENST00000428726 KRTAP13-3Q3SY46 172 aa4.71□□□□□ -1.66
CD44-208ENST00000428726 PRAC1Q96KF2 57 aa4.71□□□□□ -1.66
CD44-208ENST00000428726 RYR1P21817 5038 aa4.7□□□□□ -1.66
CD44-208ENST00000428726 ADM2Q7Z4H4 148 aa4.7□□□□□ -1.66
CD44-208ENST00000428726 Q75L30 129 aa4.7□□□□□ -1.66
CD44-208ENST00000428726 LINC00304Q8N9R0 145 aa4.7□□□□□ -1.66
CD44-208ENST00000428726 KRTAP17-1Q9BYP8 105 aa4.68□□□□□ -1.66
CD44-208ENST00000428726 PKHD1L1Q86WI1 4243 aa4.68□□□□□ -1.66
CD44-208ENST00000428726 HSPG2P98160 4391 aa4.67□□□□□ -1.66
CD44-208ENST00000428726 LPAP08519 4548 aa4.67□□□□□ -1.66
CD44-208ENST00000428726 RBM12B-AS1Q9P1G2 102 aa4.66□□□□□ -1.66
CD44-208ENST00000428726 LINC01558Q9Y6Z2 57 aa4.66□□□□□ -1.66
CD44-208ENST00000428726 KRTAP16-1A8MUX0 517 aa4.65□□□□□ -1.66
CD44-208ENST00000428726 ATP11AUNQ6ZP68 121 aa4.65□□□□□ -1.66
CD44-208ENST00000428726 CDC42SE1Q9NRR8 79 aa4.65□□□□□ -1.66
CD44-208ENST00000428726 KTN1-AS1Q86SY8 53 aa4.65□□□□□ -1.67
CD44-208ENST00000428726 ACYP2P14621 99 aa4.63□□□□□ -1.67
CD44-208ENST00000428726 RPS29P62273 56 aaKnown RBP4.63□□□□□ -1.67
CD44-208ENST00000428726 A0A1B0GU69 56 aa4.63□□□□□ -1.67
CD44-208ENST00000428726 A6NN06 94 aa4.63□□□□□ -1.67
CD44-208ENST00000428726 ABCA13Q86UQ4 5058 aa4.62□□□□□ -1.67
CD44-208ENST00000428726 A0A1B0GVY2 172 aa4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 83 ms