RNA–Protein interactions for RNA: ENST00000427534.6

SPG11-202, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SPG11, Length 6,935 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-202ENST00000427534 A0A0A0MQY5 61 aa7.42□□□□□ -1.22
SPG11-202ENST00000427534 WDFY3Q8IZQ1 3526 aa7.42□□□□□ -1.22
SPG11-202ENST00000427534 DMBT1Q9UGM3 2413 aaPredicted RBP7.4□□□□□ -1.22
SPG11-202ENST00000427534 ASB16-AS1Q495Z4 193 aa7.37□□□□□ -1.23
SPG11-202ENST00000427534 ITPR1Q14643 2758 aa7.36□□□□□ -1.23
SPG11-202ENST00000427534 COL12A1Q99715 3063 aa7.36□□□□□ -1.23
SPG11-202ENST00000427534 ITPR2Q14571 2701 aa7.36□□□□□ -1.23
SPG11-202ENST00000427534 ASH1LQ9NR48 2969 aaKnown RBP7.34□□□□□ -1.23
SPG11-202ENST00000427534 KRTAP13-1Q8IUC0 172 aa7.34□□□□□ -1.23
SPG11-202ENST00000427534 RPS29P62273 56 aaKnown RBP7.33□□□□□ -1.24
SPG11-202ENST00000427534 NSD1Q96L73 2696 aaPredicted RBP7.33□□□□□ -1.24
SPG11-202ENST00000427534 FLNCQ14315 2725 aa7.31□□□□□ -1.24
SPG11-202ENST00000427534 ADGRG4Q8IZF6 3080 aa7.31□□□□□ -1.24
SPG11-202ENST00000427534 STAB2Q8WWQ8 2551 aa7.3□□□□□ -1.24
SPG11-202ENST00000427534 KRTAP10-8P60410 259 aa7.26□□□□□ -1.25
SPG11-202ENST00000427534 HIVEP1P15822 2718 aa7.25□□□□□ -1.25
SPG11-202ENST00000427534 C10orf95Q9H7T3 257 aa7.24□□□□□ -1.25
SPG11-202ENST00000427534 UTP20O75691 2785 aaKnown RBP7.22□□□□□ -1.25
SPG11-202ENST00000427534 DCHS1Q96JQ0 3298 aa7.2□□□□□ -1.26
SPG11-202ENST00000427534 LOC400499M0QZD8 3231 aa7.19□□□□□ -1.26
SPG11-202ENST00000427534 APCP25054 2843 aa7.19□□□□□ -1.26
SPG11-202ENST00000427534 KMT2BQ9UMN6 2715 aaPredicted RBP7.17□□□□□ -1.26
SPG11-202ENST00000427534 NBPF19A0A087WUL8 3843 aa7.17□□□□□ -1.26
SPG11-202ENST00000427534 ZFHX4Q86UP3 3567 aa7.16□□□□□ -1.26
SPG11-202ENST00000427534 ZZEF1O43149 2961 aa7.16□□□□□ -1.26
SPG11-202ENST00000427534 DMXL1Q9Y485 3027 aa7.14□□□□□ -1.27
SPG11-202ENST00000427534 NBEAQ8NFP9 2946 aa7.14□□□□□ -1.27
SPG11-202ENST00000427534 TNP1P09430 55 aa7.12□□□□□ -1.27
SPG11-202ENST00000427534 KRTAP10-10P60014 251 aa7.12□□□□□ -1.27
SPG11-202ENST00000427534 KRTAP21-3Q3LHN1 58 aa7.11□□□□□ -1.27
SPG11-202ENST00000427534 RELNP78509 3460 aa7.11□□□□□ -1.27
SPG11-202ENST00000427534 TNRC18O15417 2968 aaPredicted RBP7.1□□□□□ -1.27
SPG11-202ENST00000427534 LAMA5O15230 3695 aa7.09□□□□□ -1.27
SPG11-202ENST00000427534 KRTAP25-1Q3LHN0 102 aa7.08□□□□□ -1.28
SPG11-202ENST00000427534 XP32Q5T750 250 aa7.08□□□□□ -1.28
SPG11-202ENST00000427534 A6NN06 94 aa7.07□□□□□ -1.28
SPG11-202ENST00000427534 NDUFAF8A1L188 74 aa7.06□□□□□ -1.28
SPG11-202ENST00000427534 NIPBLQ6KC79 2804 aaeCLIP7.05□□□□□ -1.28
SPG11-202ENST00000427534 CSMD1Q96PZ7 3565 aa7.03□□□□□ -1.28
SPG11-202ENST00000427534 TENM4Q6N022 2769 aa7.03□□□□□ -1.28
SPG11-202ENST00000427534 CELSR2Q9HCU4 2923 aa7.01□□□□□ -1.29
SPG11-202ENST00000427534 KRTAP1-4P0C5Y4 121 aa6.98□□□□□ -1.29
SPG11-202ENST00000427534 KRTAP16-1A8MUX0 517 aa6.94□□□□□ -1.3
SPG11-202ENST00000427534 DMDP11532 3685 aa6.92□□□□□ -1.3
SPG11-202ENST00000427534 ZANQ9Y493 2812 aa6.91□□□□□ -1.3
SPG11-202ENST00000427534 DCHS2Q6V1P9 2916 aa6.9□□□□□ -1.3
SPG11-202ENST00000427534 HRNRQ86YZ3 2850 aaPredicted RBP6.87□□□□□ -1.31
SPG11-202ENST00000427534 TENM2Q9NT68 2774 aa6.81□□□□□ -1.32
SPG11-202ENST00000427534 CELSR1Q9NYQ6 3014 aa6.78□□□□□ -1.32
SPG11-202ENST00000427534 P0C880 135 aa6.78□□□□□ -1.32
SPG11-202ENST00000427534 TPRXLQ17RH7 258 aa6.77□□□□□ -1.33
SPG11-202ENST00000427534 SMG1Q96Q15 3661 aaKnown RBP6.77□□□□□ -1.33
SPG11-202ENST00000427534 SPENQ96T58 3664 aaKnown RBP6.75□□□□□ -1.33
SPG11-202ENST00000427534 FBN2P35556 2912 aa6.75□□□□□ -1.33
SPG11-202ENST00000427534 SVEP1Q4LDE5 3571 aa6.75□□□□□ -1.33
SPG11-202ENST00000427534 H0YAA0 97 aa6.75□□□□□ -1.33
SPG11-202ENST00000427534 TENM1Q9UKZ4 2725 aa6.73□□□□□ -1.33
SPG11-202ENST00000427534 KRTAP13-3Q3SY46 172 aa6.73□□□□□ -1.33
SPG11-202ENST00000427534 PRO2289Q9P1D8 64 aa6.72□□□□□ -1.33
SPG11-202ENST00000427534 ZFHX3Q15911 3703 aa6.72□□□□□ -1.33
SPG11-202ENST00000427534 CUBNO60494 3623 aa6.72□□□□□ -1.33
SPG11-202ENST00000427534 NF1P21359 2839 aa6.69□□□□□ -1.34
SPG11-202ENST00000427534 CSMD2Q7Z408 3487 aa6.63□□□□□ -1.35
SPG11-202ENST00000427534 PKD1L1Q8TDX9 2849 aa6.62□□□□□ -1.35
SPG11-202ENST00000427534 VWFP04275 2813 aa6.61□□□□□ -1.35
SPG11-202ENST00000427534 TENM3Q9P273 2699 aa6.6□□□□□ -1.35
SPG11-202ENST00000427534 PP632Q6XCG6 107 aa6.59□□□□□ -1.35
SPG11-202ENST00000427534 MXRA5Q9NR99 2828 aa6.55□□□□□ -1.36
SPG11-202ENST00000427534 KRTAP12-2P59991 146 aa6.52□□□□□ -1.37
SPG11-202ENST00000427534 CRCT1Q9UGL9 99 aa6.5□□□□□ -1.37
SPG11-202ENST00000427534 MUC3AQ02505 3323 aa6.47□□□□□ -1.37
SPG11-202ENST00000427534 TGP01266 2768 aa6.45□□□□□ -1.38
SPG11-202ENST00000427534 PDZD2O15018 2839 aa6.41□□□□□ -1.38
SPG11-202ENST00000427534 ANK3Q12955 4377 aaKnown RBP6.37□□□□□ -1.39
SPG11-202ENST00000427534 TRRAPQ9Y4A5 3859 aa6.29□□□□□ -1.4
SPG11-202ENST00000427534 KRTAP15-1Q3LI76 137 aa6.28□□□□□ -1.4
SPG11-202ENST00000427534 KRTAP4-5Q9BYR2 181 aa6.27□□□□□ -1.41
SPG11-202ENST00000427534 KRTAP3-1Q9BYR8 98 aa6.27□□□□□ -1.41
SPG11-202ENST00000427534 OTOGQ6ZRI0 2925 aa6.26□□□□□ -1.41
SPG11-202ENST00000427534 VPS13CQ709C8 3753 aa6.25□□□□□ -1.41
SPG11-202ENST00000427534 BSNQ9UPA5 3926 aa6.23□□□□□ -1.41
SPG11-202ENST00000427534 KRTAP12-1P59990 96 aa6.22□□□□□ -1.41
SPG11-202ENST00000427534 CSMD3Q7Z407 3707 aa6.21□□□□□ -1.42
SPG11-202ENST00000427534 FBN1P35555 2871 aaKnown RBP6.2□□□□□ -1.42
SPG11-202ENST00000427534 KRTAP13-4Q3LI77 160 aa6.19□□□□□ -1.42
SPG11-202ENST00000427534 HUWE1Q7Z6Z7 4374 aaKnown RBP6.12□□□□□ -1.43
SPG11-202ENST00000427534 SRRM2Q9UQ35 2752 aaKnown RBP6.1□□□□□ -1.43
SPG11-202ENST00000427534 KRTAP10-6P60371 365 aaPredicted RBP6.06□□□□□ -1.44
SPG11-202ENST00000427534 MT1HL1P0DM35 61 aa6.01□□□□□ -1.45
SPG11-202ENST00000427534 FBN3Q75N90 2809 aa5.99□□□□□ -1.45
SPG11-202ENST00000427534 MEGF8Q7Z7M0 2845 aa5.96□□□□□ -1.46
SPG11-202ENST00000427534 COL7A1Q02388 2944 aa5.95□□□□□ -1.46
SPG11-202ENST00000427534 KRTAP10-12P60413 245 aa5.92□□□□□ -1.46
SPG11-202ENST00000427534 LORP23490 312 aaPredicted RBP5.91□□□□□ -1.46
SPG11-202ENST00000427534 KRTAP10-4P60372 401 aaPredicted RBP5.9□□□□□ -1.46
SPG11-202ENST00000427534 AKAP9Q99996 3911 aa5.89□□□□□ -1.47
SPG11-202ENST00000427534 KRTAP3-3Q9BYR6 98 aa5.87□□□□□ -1.47
SPG11-202ENST00000427534 KRTAP3-2Q9BYR7 98 aa5.86□□□□□ -1.47
SPG11-202ENST00000427534 ALMS1Q8TCU4 4167 aa5.82□□□□□ -1.48
SPG11-202ENST00000427534 ZNF469Q96JG9 3925 aaPredicted RBP5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms