RNA–Protein interactions for RNA: ENST00000425518.5

SMARCC1-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

TSL 2

Gene SMARCC1, Length 3,827 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-202ENST00000425518 TGP01266 2768 aa4.5□□□□□ -1.69
SMARCC1-202ENST00000425518 IGLV5-52A0A0A0MRZ9 124 aa4.49□□□□□ -1.69
SMARCC1-202ENST00000425518 ASB16-AS1Q495Z4 193 aa4.49□□□□□ -1.69
SMARCC1-202ENST00000425518 ZNF861PO60384 105 aa4.49□□□□□ -1.69
SMARCC1-202ENST00000425518 CIRBP-AS1Q8TBR5 109 aa4.48□□□□□ -1.69
SMARCC1-202ENST00000425518 Q6ZR54 194 aa4.48□□□□□ -1.69
SMARCC1-202ENST00000425518 HRES1P13985 223 aa4.46□□□□□ -1.69
SMARCC1-202ENST00000425518 LCA10Q71F78 164 aa4.46□□□□□ -1.69
SMARCC1-202ENST00000425518 Q5W150 140 aa4.45□□□□□ -1.7
SMARCC1-202ENST00000425518 Q75L30 129 aa4.45□□□□□ -1.7
SMARCC1-202ENST00000425518 DNAH8Q96JB1 4490 aa4.45□□□□□ -1.7
SMARCC1-202ENST00000425518 LOC101927531A0A1B0GV80 90 aa4.45□□□□□ -1.7
SMARCC1-202ENST00000425518 LY6G6CO95867 125 aa4.45□□□□□ -1.7
SMARCC1-202ENST00000425518 MEGF8Q7Z7M0 2845 aa4.45□□□□□ -1.7
SMARCC1-202ENST00000425518 FRAS1Q86XX4 4008 aa4.45□□□□□ -1.7
SMARCC1-202ENST00000425518 RETNLBQ9BQ08 111 aa4.44□□□□□ -1.7
SMARCC1-202ENST00000425518 PLAC8Q9NZF1 115 aa4.44□□□□□ -1.7
SMARCC1-202ENST00000425518 PRR26Q8N8Z3 221 aa4.44□□□□□ -1.7
SMARCC1-202ENST00000425518 DYNC2H1Q8NCM8 4307 aaKnown RBP4.44□□□□□ -1.7
SMARCC1-202ENST00000425518 STARD9Q9P2P6 4700 aa4.43□□□□□ -1.7
SMARCC1-202ENST00000425518 LINC01558Q9Y6Z2 57 aa4.43□□□□□ -1.7
SMARCC1-202ENST00000425518 IGLV7-43P04211 117 aa4.42□□□□□ -1.7
SMARCC1-202ENST00000425518 VPS13DQ5THJ4 4388 aa4.42□□□□□ -1.7
SMARCC1-202ENST00000425518 SPINK7P58062 85 aa4.41□□□□□ -1.7
SMARCC1-202ENST00000425518 ATP11AUNQ6ZP68 121 aa4.41□□□□□ -1.7
SMARCC1-202ENST00000425518 FBN3Q75N90 2809 aa4.41□□□□□ -1.7
SMARCC1-202ENST00000425518 C1orf134Q5TEV5 83 aa4.41□□□□□ -1.7
SMARCC1-202ENST00000425518 KMT2AQ03164 3969 aa4.4□□□□□ -1.7
SMARCC1-202ENST00000425518 CDC42SE1Q9NRR8 79 aa4.4□□□□□ -1.71
SMARCC1-202ENST00000425518 HECTD4Q9Y4D8 3996 aa4.4□□□□□ -1.71
SMARCC1-202ENST00000425518 DNAH17Q9UFH2 4485 aa4.4□□□□□ -1.71
SMARCC1-202ENST00000425518 DNAH2Q9P225 4427 aa4.39□□□□□ -1.71
SMARCC1-202ENST00000425518 LINC00313P59037 77 aa4.38□□□□□ -1.71
SMARCC1-202ENST00000425518 ACYP2P14621 99 aa4.38□□□□□ -1.71
SMARCC1-202ENST00000425518 SSBP3-AS1Q7Z2R9 100 aa4.37□□□□□ -1.71
SMARCC1-202ENST00000425518 KRTAP13-3Q3SY46 172 aa4.37□□□□□ -1.71
SMARCC1-202ENST00000425518 KTN1-AS1Q86SY8 53 aa4.36□□□□□ -1.71
SMARCC1-202ENST00000425518 C8orf87E5RJ46 101 aa4.36□□□□□ -1.71
SMARCC1-202ENST00000425518 A6NN06 94 aa4.35□□□□□ -1.71
SMARCC1-202ENST00000425518 KRTAP10-2P60368 255 aa4.35□□□□□ -1.71
SMARCC1-202ENST00000425518 FAM229AH3BQW9 127 aa4.34□□□□□ -1.72
SMARCC1-202ENST00000425518 DNAH11Q96DT5 4516 aa4.33□□□□□ -1.72
SMARCC1-202ENST00000425518 IGKV2D-30A0A075B6S6 120 aa4.33□□□□□ -1.72
SMARCC1-202ENST00000425518 IGKV2-30P06310 120 aa4.33□□□□□ -1.72
SMARCC1-202ENST00000425518 KRTAP13-2Q52LG2 175 aa4.32□□□□□ -1.72
SMARCC1-202ENST00000425518 DNAH6Q9C0G6 4158 aa4.32□□□□□ -1.72
SMARCC1-202ENST00000425518 DMAC1Q96GE9 116 aa4.31□□□□□ -1.72
SMARCC1-202ENST00000425518 A0A1B0GU69 56 aa4.31□□□□□ -1.72
SMARCC1-202ENST00000425518 RBM12B-AS1Q9P1G2 102 aa4.31□□□□□ -1.72
SMARCC1-202ENST00000425518 LRP1BQ9NZR2 4599 aa4.29□□□□□ -1.72
SMARCC1-202ENST00000425518 KRTAP10-1P60331 282 aa4.29□□□□□ -1.72
SMARCC1-202ENST00000425518 C7orf65Q6ZTY9 151 aa4.29□□□□□ -1.72
SMARCC1-202ENST00000425518 ALMS1Q8TCU4 4167 aa4.29□□□□□ -1.72
SMARCC1-202ENST00000425518 C4orf48Q5BLP8 95 aa4.28□□□□□ -1.72
SMARCC1-202ENST00000425518 DNAH5Q8TE73 4624 aa4.27□□□□□ -1.73
SMARCC1-202ENST00000425518 KRTAP16-1A8MUX0 517 aa4.26□□□□□ -1.73
SMARCC1-202ENST00000425518 SPINK1P00995 79 aa4.26□□□□□ -1.73
SMARCC1-202ENST00000425518 PLA2G1BP04054 148 aaKnown RBP4.26□□□□□ -1.73
SMARCC1-202ENST00000425518 TYMSOSQ8TAI1 123 aa4.24□□□□□ -1.73
SMARCC1-202ENST00000425518 PRAC1Q96KF2 57 aa4.24□□□□□ -1.73
SMARCC1-202ENST00000425518 KMT2CQ8NEZ4 4911 aaKnown RBP4.24□□□□□ -1.73
SMARCC1-202ENST00000425518 KRTAP1-4P0C5Y4 121 aa4.24□□□□□ -1.73
SMARCC1-202ENST00000425518 RYR3Q15413 4870 aa4.23□□□□□ -1.73
SMARCC1-202ENST00000425518 MIR22HGQ0VDD5 57 aa4.23□□□□□ -1.73
SMARCC1-202ENST00000425518 Q8N1X5 172 aa4.23□□□□□ -1.73
SMARCC1-202ENST00000425518 UQCR11O14957 56 aa4.22□□□□□ -1.73
SMARCC1-202ENST00000425518 ADM2Q7Z4H4 148 aa4.22□□□□□ -1.73
SMARCC1-202ENST00000425518 Q6ZSA8 131 aa4.21□□□□□ -1.73
SMARCC1-202ENST00000425518 HYDINQ4G0P3 5121 aa4.21□□□□□ -1.74
SMARCC1-202ENST00000425518 SPATA8Q6RVD6 105 aa4.21□□□□□ -1.74
SMARCC1-202ENST00000425518 SACSQ9NZJ4 4579 aa4.2□□□□□ -1.74
SMARCC1-202ENST00000425518 VPS13BQ7Z7G8 4022 aa4.19□□□□□ -1.74
SMARCC1-202ENST00000425518 C9orf92A6NGG3 77 aa4.16□□□□□ -1.74
SMARCC1-202ENST00000425518 SMR3BP02814 79 aaPredicted RBP4.16□□□□□ -1.74
SMARCC1-202ENST00000425518 LINC00304Q8N9R0 145 aa4.16□□□□□ -1.74
SMARCC1-202ENST00000425518 DMBT1Q9UGM3 2413 aaPredicted RBP4.16□□□□□ -1.74
SMARCC1-202ENST00000425518 PKD1P98161 4303 aa4.14□□□□□ -1.75
SMARCC1-202ENST00000425518 FAT2Q9NYQ8 4349 aa4.14□□□□□ -1.75
SMARCC1-202ENST00000425518 RYR2Q92736 4967 aa4.14□□□□□ -1.75
SMARCC1-202ENST00000425518 PKHD1P08F94 4074 aa4.09□□□□□ -1.75
SMARCC1-202ENST00000425518 FAT1Q14517 4588 aa4.09□□□□□ -1.75
SMARCC1-202ENST00000425518 CSAG1Q6PB30 78 aa4.09□□□□□ -1.76
SMARCC1-202ENST00000425518 J3QL48 77 aa4.08□□□□□ -1.76
SMARCC1-202ENST00000425518 H3BS24 57 aa4.07□□□□□ -1.76
SMARCC1-202ENST00000425518 LINC01554Q52M75 96 aa4.07□□□□□ -1.76
SMARCC1-202ENST00000425518 FLG2Q5D862 2391 aaPredicted RBP4.06□□□□□ -1.76
SMARCC1-202ENST00000425518 KRTAP3-1Q9BYR8 98 aa4.06□□□□□ -1.76
SMARCC1-202ENST00000425518 RPS29P62273 56 aaKnown RBP4.05□□□□□ -1.76
SMARCC1-202ENST00000425518 A0A1B0GU33 70 aa4.05□□□□□ -1.76
SMARCC1-202ENST00000425518 A8MUU9 505 aa4.05□□□□□ -1.76
SMARCC1-202ENST00000425518 H0YAA0 97 aa4.05□□□□□ -1.76
SMARCC1-202ENST00000425518 DYNC1H1Q14204 4646 aaKnown RBP4.05□□□□□ -1.76
SMARCC1-202ENST00000425518 C20orf166-AS1Q96NR2 134 aa4.04□□□□□ -1.76
SMARCC1-202ENST00000425518 EPPK1P58107 5090 aaKnown RBP4.03□□□□□ -1.76
SMARCC1-202ENST00000425518 H1FX-AS1Q4G0G2 97 aa4.01□□□□□ -1.77
SMARCC1-202ENST00000425518 COX6B2Q6YFQ2 88 aa3.98□□□□□ -1.77
SMARCC1-202ENST00000425518 CRIPTQ9P021 101 aa3.97□□□□□ -1.77
SMARCC1-202ENST00000425518 KRTAP10-4P60372 401 aaPredicted RBP3.96□□□□□ -1.78
SMARCC1-202ENST00000425518 K7ERS5 55 aa3.95□□□□□ -1.78
SMARCC1-202ENST00000425518 APOBP04114 4563 aaKnown RBP3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms