RNA–Protein interactions for RNA: ENST00000420138.5

GPC1-202, Transcript of glypican 1, humanhuman

TSL 5 BASIC

Gene GPC1, Length 1,835 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-202ENST00000420138 KRTAP29-1A8MX34 341 aaPredicted RBP12.12□□□□□ -0.47
GPC1-202ENST00000420138 NDUFB1O75438 58 aa12.11□□□□□ -0.47
GPC1-202ENST00000420138 RPS28P62857 69 aaKnown RBP12.11□□□□□ -0.47
GPC1-202ENST00000420138 PKHD1L1Q86WI1 4243 aa12.1□□□□□ -0.47
GPC1-202ENST00000420138 CASC2Q6XLA1 102 aa12.1□□□□□ -0.47
GPC1-202ENST00000420138 FAM236DA0A1B0GTK5 79 aa12.09□□□□□ -0.47
GPC1-202ENST00000420138 FAM236CP0DP71 79 aa12.09□□□□□ -0.47
GPC1-202ENST00000420138 ASB16-AS1Q495Z4 193 aa12.09□□□□□ -0.47
GPC1-202ENST00000420138 Q5XG85 94 aa12.09□□□□□ -0.47
GPC1-202ENST00000420138 C5orf47Q569G3 176 aa12.07□□□□□ -0.48
GPC1-202ENST00000420138 MMP24-AS1A0A0U1RRL7 71 aa12.03□□□□□ -0.48
GPC1-202ENST00000420138 SPINK1P00995 79 aa12□□□□□ -0.49
GPC1-202ENST00000420138 C1orf195Q5TG92 126 aa11.99□□□□□ -0.49
GPC1-202ENST00000420138 LINC00304Q8N9R0 145 aa11.99□□□□□ -0.49
GPC1-202ENST00000420138 hDV103S1A0JD37 113 aa11.98□□□□□ -0.49
GPC1-202ENST00000420138 ATP5EP56381 51 aaPredicted RBP11.98□□□□□ -0.49
GPC1-202ENST00000420138 C4orf48Q5BLP8 95 aa11.98□□□□□ -0.49
GPC1-202ENST00000420138 ZCCHC13Q8WW36 166 aaKnown RBP11.98□□□□□ -0.49
GPC1-202ENST00000420138 A0A1B0GVX0 72 aa11.97□□□□□ -0.49
GPC1-202ENST00000420138 LIMD2Q9BT23 127 aa11.97□□□□□ -0.49
GPC1-202ENST00000420138 C8orf17Q9NRJ1 99 aa11.96□□□□□ -0.49
GPC1-202ENST00000420138 MP68P56378 58 aa11.95□□□□□ -0.5
GPC1-202ENST00000420138 LRP1Q07954 4544 aaKnown RBP11.93□□□□□ -0.5
GPC1-202ENST00000420138 RPS29P62273 56 aaKnown RBP11.93□□□□□ -0.5
GPC1-202ENST00000420138 SPAG11AQ6PDA7 123 aa11.93□□□□□ -0.5
GPC1-202ENST00000420138 SERP1Q9Y6X1 66 aa11.93□□□□□ -0.5
GPC1-202ENST00000420138 IGHV6-1A0A0B4J1U7 121 aa11.93□□□□□ -0.5
GPC1-202ENST00000420138 BIRC6Q9NR09 4857 aa11.92□□□□□ -0.5
GPC1-202ENST00000420138 NOTCH2NLQ7Z3S9 236 aa11.92□□□□□ -0.5
GPC1-202ENST00000420138 OXTP01178 125 aa11.9□□□□□ -0.5
GPC1-202ENST00000420138 KRTAP4-5Q9BYR2 181 aa11.9□□□□□ -0.5
GPC1-202ENST00000420138 H0Y9P7 68 aa11.88□□□□□ -0.51
GPC1-202ENST00000420138 H3BPC8 53 aa11.88□□□□□ -0.51
GPC1-202ENST00000420138 KRTAP10-8P60410 259 aa11.86□□□□□ -0.51
GPC1-202ENST00000420138 TNXBP22105 4242 aa11.86□□□□□ -0.51
GPC1-202ENST00000420138 LINC00208Q96KT6 92 aa11.86□□□□□ -0.51
GPC1-202ENST00000420138 TP53AIP1Q9HCN2 124 aa11.86□□□□□ -0.51
GPC1-202ENST00000420138 FAT3Q8TDW7 4589 aa11.85□□□□□ -0.51
GPC1-202ENST00000420138 FLG2Q5D862 2391 aaPredicted RBP11.84□□□□□ -0.51
GPC1-202ENST00000420138 MRPL34Q9BQ48 92 aaKnown RBP11.83□□□□□ -0.52
GPC1-202ENST00000420138 TRAV22A0A0B4J277 110 aa11.82□□□□□ -0.52
GPC1-202ENST00000420138 C8orf87E5RJ46 101 aa11.77□□□□□ -0.52
GPC1-202ENST00000420138 NDUFS5O43920 106 aa11.77□□□□□ -0.52
GPC1-202ENST00000420138 C1orf64Q8NEQ6 169 aa11.77□□□□□ -0.52
GPC1-202ENST00000420138 MYCBP2O75592 4640 aa11.74□□□□□ -0.53
GPC1-202ENST00000420138 HERC2O95714 4834 aa11.73□□□□□ -0.53
GPC1-202ENST00000420138 LINC00313P59037 77 aa11.73□□□□□ -0.53
GPC1-202ENST00000420138 MT1HL1P0DM35 61 aa11.71□□□□□ -0.54
GPC1-202ENST00000420138 KRTAP16-1A8MUX0 517 aa11.7□□□□□ -0.54
GPC1-202ENST00000420138 CYP4F30PQ9H0H9 118 aa11.7□□□□□ -0.54
GPC1-202ENST00000420138 SMIM26A0A096LP01 95 aa11.69□□□□□ -0.54
GPC1-202ENST00000420138 SPANXA2-OT1Q8N9U9 137 aa11.67□□□□□ -0.54
GPC1-202ENST00000420138 RETNLBQ9BQ08 111 aa11.66□□□□□ -0.54
GPC1-202ENST00000420138 PRR4Q16378 134 aa11.63□□□□□ -0.55
GPC1-202ENST00000420138 Q8N9P0 234 aaPredicted RBP11.63□□□□□ -0.55
GPC1-202ENST00000420138 ABCA13Q86UQ4 5058 aa11.61□□□□□ -0.55
GPC1-202ENST00000420138 FP248Q71RG6 208 aaPredicted RBP11.58□□□□□ -0.56
GPC1-202ENST00000420138 DMBT1Q9UGM3 2413 aaPredicted RBP11.56□□□□□ -0.56
GPC1-202ENST00000420138 Q5W150 140 aa11.56□□□□□ -0.56
GPC1-202ENST00000420138 KRTAP13-3Q3SY46 172 aa11.56□□□□□ -0.56
GPC1-202ENST00000420138 PCOTHQ58A44 107 aa11.55□□□□□ -0.56
GPC1-202ENST00000420138 IGLV7-46A0A075B6I9 117 aa11.54□□□□□ -0.56
GPC1-202ENST00000420138 C4orf26Q17RF5 130 aa11.54□□□□□ -0.56
GPC1-202ENST00000420138 LOC101927531A0A1B0GV80 90 aa11.53□□□□□ -0.56
GPC1-202ENST00000420138 J3QL48 77 aa11.52□□□□□ -0.57
GPC1-202ENST00000420138 C9orf92A6NGG3 77 aa11.49□□□□□ -0.57
GPC1-202ENST00000420138 MPLKIPQ8TAP9 179 aa11.42□□□□□ -0.58
GPC1-202ENST00000420138 C20orf166-AS1Q96NR2 134 aa11.42□□□□□ -0.58
GPC1-202ENST00000420138 A8MUU9 505 aa11.39□□□□□ -0.59
GPC1-202ENST00000420138 Q1T7F1 81 aa11.35□□□□□ -0.59
GPC1-202ENST00000420138 COA5Q86WW8 74 aa11.35□□□□□ -0.59
GPC1-202ENST00000420138 IGKV2-30P06310 120 aa11.35□□□□□ -0.59
GPC1-202ENST00000420138 PCLOQ9Y6V0 5065 aa11.29□□□□□ -0.6
GPC1-202ENST00000420138 Q75L30 129 aa11.28□□□□□ -0.6
GPC1-202ENST00000420138 HRES1P13985 223 aa11.27□□□□□ -0.61
GPC1-202ENST00000420138 V9GYY9 64 aa11.27□□□□□ -0.61
GPC1-202ENST00000420138 XP32Q5T750 250 aa11.23□□□□□ -0.61
GPC1-202ENST00000420138 IGKV2D-30A0A075B6S6 120 aa11.21□□□□□ -0.62
GPC1-202ENST00000420138 ACYP2P14621 99 aa11.19□□□□□ -0.62
GPC1-202ENST00000420138 DMAC1Q96GE9 116 aa11.18□□□□□ -0.62
GPC1-202ENST00000420138 TPRXLQ17RH7 258 aa11.16□□□□□ -0.62
GPC1-202ENST00000420138 RPL37P61927 97 aaKnown RBP11.16□□□□□ -0.62
GPC1-202ENST00000420138 SVIPQ8NHG7 77 aa11.15□□□□□ -0.62
GPC1-202ENST00000420138 PSPHP1O15172 72 aa11.14□□□□□ -0.63
GPC1-202ENST00000420138 C7orf65Q6ZTY9 151 aa11.11□□□□□ -0.63
GPC1-202ENST00000420138 A8MUN3 132 aa11.09□□□□□ -0.63
GPC1-202ENST00000420138 LPAP08519 4548 aa11.08□□□□□ -0.63
GPC1-202ENST00000420138 ATP11AUNQ6ZP68 121 aa11.07□□□□□ -0.64
GPC1-202ENST00000420138 SPINK7P58062 85 aa11.04□□□□□ -0.64
GPC1-202ENST00000420138 PRR15LQ9BU68 103 aa11.04□□□□□ -0.64
GPC1-202ENST00000420138 LINC01558Q9Y6Z2 57 aa11.04□□□□□ -0.64
GPC1-202ENST00000420138 LRP2P98164 4655 aa11.03□□□□□ -0.64
GPC1-202ENST00000420138 CHKB-CPT1BH3BT56 60 aa11.03□□□□□ -0.64
GPC1-202ENST00000420138 Q5VV11 94 aa11.02□□□□□ -0.64
GPC1-202ENST00000420138 BRK1Q8WUW1 75 aa11.02□□□□□ -0.65
GPC1-202ENST00000420138 PRO0628Q9UI54 55 aa11□□□□□ -0.65
GPC1-202ENST00000420138 HERC1Q15751 4861 aa10.99□□□□□ -0.65
GPC1-202ENST00000420138 KRTAP3-1Q9BYR8 98 aa10.85□□□□□ -0.67
GPC1-202ENST00000420138 HMCN2Q8NDA2 5059 aa10.8□□□□□ -0.68
GPC1-202ENST00000420138 SEC61BP60468 96 aaKnown RBP10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms