RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 USP9YO00507 2555 aaPredicted RBP1.58□□□□□ -2.16
VPS54-204ENST00000416400 XIRP2A4UGR9 3374 aa1.58□□□□□ -2.16
VPS54-204ENST00000416400 JMJD1CQ15652 2540 aa1.58□□□□□ -2.16
VPS54-204ENST00000416400 A0A0D9SG42 100 aa1.58□□□□□ -2.16
VPS54-204ENST00000416400 F8P00451 2351 aa1.58□□□□□ -2.16
VPS54-204ENST00000416400 DOPEY1Q5JWR5 2465 aa1.58□□□□□ -2.16
VPS54-204ENST00000416400 VCANP13611 3396 aa1.58□□□□□ -2.16
VPS54-204ENST00000416400 ZNF462Q96JM2 2506 aa1.57□□□□□ -2.16
VPS54-204ENST00000416400 C5orf42Q9H799 3197 aa1.57□□□□□ -2.16
VPS54-204ENST00000416400 C10orf95Q9H7T3 257 aa1.57□□□□□ -2.16
VPS54-204ENST00000416400 ALMS1Q8TCU4 4167 aa1.57□□□□□ -2.16
VPS54-204ENST00000416400 ITPR1Q14643 2758 aa1.57□□□□□ -2.16
VPS54-204ENST00000416400 NCOR2Q9Y618 2525 aa1.57□□□□□ -2.16
VPS54-204ENST00000416400 ANKRD11Q6UB99 2663 aaPredicted RBP1.56□□□□□ -2.16
VPS54-204ENST00000416400 TRIOO75962 3097 aa1.56□□□□□ -2.16
VPS54-204ENST00000416400 CFAP54Q96N23 3096 aa1.56□□□□□ -2.16
VPS54-204ENST00000416400 FLG2Q5D862 2391 aaPredicted RBP1.56□□□□□ -2.16
VPS54-204ENST00000416400 VPS13AQ96RL7 3174 aa1.56□□□□□ -2.16
VPS54-204ENST00000416400 INE1O15225 51 aa1.56□□□□□ -2.16
VPS54-204ENST00000416400 FRYQ5TBA9 3013 aa1.56□□□□□ -2.16
VPS54-204ENST00000416400 MAP1AP78559 2803 aaPredicted RBP1.56□□□□□ -2.16
VPS54-204ENST00000416400 PRRC2CQ9Y520 2896 aaKnown RBP1.56□□□□□ -2.16
VPS54-204ENST00000416400 PKD1L2Q7Z442 2459 aa1.55□□□□□ -2.16
VPS54-204ENST00000416400 LAMA2P24043 3122 aaKnown RBP1.55□□□□□ -2.16
VPS54-204ENST00000416400 COL6A3P12111 3177 aa1.55□□□□□ -2.16
VPS54-204ENST00000416400 SPTBN4Q9H254 2564 aa1.55□□□□□ -2.16
VPS54-204ENST00000416400 MKI67P46013 3256 aaKnown RBP1.55□□□□□ -2.16
VPS54-204ENST00000416400 USP34Q70CQ2 3546 aa1.55□□□□□ -2.16
VPS54-204ENST00000416400 MGAQ8IWI9 3026 aa1.55□□□□□ -2.16
VPS54-204ENST00000416400 ACANP16112 2415 aa1.55□□□□□ -2.16
VPS54-204ENST00000416400 BRCA2P51587 3418 aa1.54□□□□□ -2.16
VPS54-204ENST00000416400 IGF2RP11717 2491 aa1.54□□□□□ -2.16
VPS54-204ENST00000416400 ACACBO00763 2458 aa1.54□□□□□ -2.16
VPS54-204ENST00000416400 DSPP15924 2871 aaKnown RBP1.53□□□□□ -2.16
VPS54-204ENST00000416400 MTORP42345 2549 aa1.53□□□□□ -2.16
VPS54-204ENST00000416400 CEP295Q9C0D2 2601 aa1.53□□□□□ -2.16
VPS54-204ENST00000416400 FRYLO94915 3013 aa1.52□□□□□ -2.17
VPS54-204ENST00000416400 CHD8Q9HCK8 2581 aa1.52□□□□□ -2.17
VPS54-204ENST00000416400 PTPN13Q12923 2485 aa1.52□□□□□ -2.17
VPS54-204ENST00000416400 KALRNO60229 2985 aa1.52□□□□□ -2.17
VPS54-204ENST00000416400 AKAP13Q12802 2813 aa1.52□□□□□ -2.17
VPS54-204ENST00000416400 CDH23Q9H251 3354 aa1.51□□□□□ -2.17
VPS54-204ENST00000416400 CRCT1Q9UGL9 99 aa1.51□□□□□ -2.17
VPS54-204ENST00000416400 WDFY4Q6ZS81 3184 aa1.51□□□□□ -2.17
VPS54-204ENST00000416400 PIEZO1Q92508 2521 aa1.5□□□□□ -2.17
VPS54-204ENST00000416400 CHD6Q8TD26 2715 aa1.5□□□□□ -2.17
VPS54-204ENST00000416400 WDFY3Q8IZQ1 3526 aa1.5□□□□□ -2.17
VPS54-204ENST00000416400 SMR3AQ99954 134 aa1.5□□□□□ -2.17
VPS54-204ENST00000416400 FREM2Q5SZK8 3169 aa1.5□□□□□ -2.17
VPS54-204ENST00000416400 EPG5Q9HCE0 2579 aa1.5□□□□□ -2.17
VPS54-204ENST00000416400 SPTBN5Q9NRC6 3674 aaKnown RBP1.49□□□□□ -2.17
VPS54-204ENST00000416400 LAMA3Q16787 3333 aa1.49□□□□□ -2.17
VPS54-204ENST00000416400 ADGRG4Q8IZF6 3080 aa1.49□□□□□ -2.17
VPS54-204ENST00000416400 ZFHX4Q86UP3 3567 aa1.49□□□□□ -2.17
VPS54-204ENST00000416400 SETXQ7Z333 2677 aaKnown RBP1.49□□□□□ -2.17
VPS54-204ENST00000416400 UNC79Q9P2D8 2635 aa1.49□□□□□ -2.17
VPS54-204ENST00000416400 LRRK2Q5S007 2527 aa1.48□□□□□ -2.17
VPS54-204ENST00000416400 TACC2O95359 2948 aa1.48□□□□□ -2.17
VPS54-204ENST00000416400 ABCA12Q86UK0 2595 aa1.48□□□□□ -2.17
VPS54-204ENST00000416400 LAMA1P25391 3075 aa1.48□□□□□ -2.17
VPS54-204ENST00000416400 PRUNE2Q8WUY3 3088 aa1.48□□□□□ -2.17
VPS54-204ENST00000416400 C9orf92A6NGG3 77 aa1.48□□□□□ -2.17
VPS54-204ENST00000416400 CACNA1AO00555 2505 aa1.48□□□□□ -2.17
VPS54-204ENST00000416400 TTC28Q96AY4 2481 aa1.48□□□□□ -2.17
VPS54-204ENST00000416400 CFAP47Q6ZTR5 3102 aa1.47□□□□□ -2.17
VPS54-204ENST00000416400 FAM208BQ5VWN6 2430 aa1.47□□□□□ -2.17
VPS54-204ENST00000416400 GCN1Q92616 2671 aaKnown RBP1.47□□□□□ -2.17
VPS54-204ENST00000416400 NBEAL2Q6ZNJ1 2754 aa1.47□□□□□ -2.17
VPS54-204ENST00000416400 POLQO75417 2590 aa1.47□□□□□ -2.17
VPS54-204ENST00000416400 HRNRQ86YZ3 2850 aaPredicted RBP1.46□□□□□ -2.18
VPS54-204ENST00000416400 CCDC168Q8NDH2 2452 aa1.46□□□□□ -2.18
VPS54-204ENST00000416400 BDP1A6H8Y1 2624 aa1.46□□□□□ -2.18
VPS54-204ENST00000416400 UTP20O75691 2785 aaKnown RBP1.46□□□□□ -2.18
VPS54-204ENST00000416400 HELZ2Q9BYK8 2649 aaKnown RBP1.46□□□□□ -2.18
VPS54-204ENST00000416400 CELSR3Q9NYQ7 3312 aa1.46□□□□□ -2.18
VPS54-204ENST00000416400 MYO18BQ8IUG5 2567 aa1.46□□□□□ -2.18
VPS54-204ENST00000416400 SETD2Q9BYW2 2564 aaPredicted RBP1.46□□□□□ -2.18
VPS54-204ENST00000416400 SPEGQ15772 3267 aa1.45□□□□□ -2.18
VPS54-204ENST00000416400 CENPEQ02224 2701 aa1.45□□□□□ -2.18
VPS54-204ENST00000416400 SMG1Q96Q15 3661 aaKnown RBP1.45□□□□□ -2.18
VPS54-204ENST00000416400 Q5VSD8 79 aa1.45□□□□□ -2.18
VPS54-204ENST00000416400 FASNP49327 2511 aaKnown RBP1.45□□□□□ -2.18
VPS54-204ENST00000416400 APCP25054 2843 aa1.45□□□□□ -2.18
VPS54-204ENST00000416400 CSMD1Q96PZ7 3565 aa1.44□□□□□ -2.18
VPS54-204ENST00000416400 DCHS1Q96JQ0 3298 aa1.44□□□□□ -2.18
VPS54-204ENST00000416400 DMXL2Q8TDJ6 3036 aa1.44□□□□□ -2.18
VPS54-204ENST00000416400 DMDP11532 3685 aa1.44□□□□□ -2.18
VPS54-204ENST00000416400 MYO15AQ9UKN7 3530 aa1.44□□□□□ -2.18
VPS54-204ENST00000416400 TENM2Q9NT68 2774 aa1.44□□□□□ -2.18
VPS54-204ENST00000416400 TNP1P09430 55 aa1.43□□□□□ -2.18
VPS54-204ENST00000416400 REV3LO60673 3130 aa1.43□□□□□ -2.18
VPS54-204ENST00000416400 ZNF292O60281 2723 aa1.43□□□□□ -2.18
VPS54-204ENST00000416400 SPENQ96T58 3664 aaKnown RBP1.42□□□□□ -2.18
VPS54-204ENST00000416400 TEX15Q9BXT5 2789 aa1.42□□□□□ -2.18
VPS54-204ENST00000416400 LRBAP50851 2863 aa1.41□□□□□ -2.18
VPS54-204ENST00000416400 DMBT1Q9UGM3 2413 aaPredicted RBP1.41□□□□□ -2.18
VPS54-204ENST00000416400 NF1P21359 2839 aa1.41□□□□□ -2.18
VPS54-204ENST00000416400 KRTAP10-4P60372 401 aaPredicted RBP1.41□□□□□ -2.18
VPS54-204ENST00000416400 ASH1LQ9NR48 2969 aaKnown RBP1.4□□□□□ -2.19
VPS54-204ENST00000416400 LOC400499M0QZD8 3231 aa1.4□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms