RNA–Protein interactions for RNA: ENST00000411767.6

PTPN13-202, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 8,119 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-202ENST00000411767 ZZEF1O43149 2961 aa2.35□□□□□ -2.03
PTPN13-202ENST00000411767 LRBAP50851 2863 aa2.34□□□□□ -2.03
PTPN13-202ENST00000411767 SMG1Q96Q15 3661 aaKnown RBP2.34□□□□□ -2.03
PTPN13-202ENST00000411767 USP9XQ93008 2570 aaPredicted RBP2.33□□□□□ -2.04
PTPN13-202ENST00000411767 ITPR1Q14643 2758 aa2.32□□□□□ -2.04
PTPN13-202ENST00000411767 KRTAP10-7P60409 375 aaPredicted RBP2.32□□□□□ -2.04
PTPN13-202ENST00000411767 TPRXLQ17RH7 258 aa2.32□□□□□ -2.04
PTPN13-202ENST00000411767 CFAP46Q8IYW2 2715 aa2.31□□□□□ -2.04
PTPN13-202ENST00000411767 ABCA12Q86UK0 2595 aa2.31□□□□□ -2.04
PTPN13-202ENST00000411767 ASH1LQ9NR48 2969 aaKnown RBP2.3□□□□□ -2.04
PTPN13-202ENST00000411767 FLNCQ14315 2725 aa2.3□□□□□ -2.04
PTPN13-202ENST00000411767 IGSF10Q6WRI0 2623 aa2.29□□□□□ -2.04
PTPN13-202ENST00000411767 NBPF19A0A087WUL8 3843 aa2.29□□□□□ -2.04
PTPN13-202ENST00000411767 XP32Q5T750 250 aa2.29□□□□□ -2.04
PTPN13-202ENST00000411767 JMJD1CQ15652 2540 aa2.28□□□□□ -2.04
PTPN13-202ENST00000411767 USP9YO00507 2555 aaPredicted RBP2.28□□□□□ -2.04
PTPN13-202ENST00000411767 ANKRD17O75179 2603 aaKnown RBP2.28□□□□□ -2.04
PTPN13-202ENST00000411767 KRTAP1-5Q9BYS1 174 aa2.27□□□□□ -2.05
PTPN13-202ENST00000411767 DNHD1Q96M86 4753 aa2.27□□□□□ -2.05
PTPN13-202ENST00000411767 COL12A1Q99715 3063 aa2.27□□□□□ -2.05
PTPN13-202ENST00000411767 USP24Q9UPU5 2620 aa2.27□□□□□ -2.05
PTPN13-202ENST00000411767 SETD2Q9BYW2 2564 aaPredicted RBP2.27□□□□□ -2.05
PTPN13-202ENST00000411767 DNAH1Q9P2D7 4330 aa2.26□□□□□ -2.05
PTPN13-202ENST00000411767 CELSR2Q9HCU4 2923 aa2.26□□□□□ -2.05
PTPN13-202ENST00000411767 KRTAP19-4Q3LI73 84 aa2.25□□□□□ -2.05
PTPN13-202ENST00000411767 UBR5O95071 2799 aaPredicted RBP2.25□□□□□ -2.05
PTPN13-202ENST00000411767 CRYBG3Q68DQ2 2970 aa2.25□□□□□ -2.05
PTPN13-202ENST00000411767 MAP1AP78559 2803 aaPredicted RBP2.25□□□□□ -2.05
PTPN13-202ENST00000411767 CELSR1Q9NYQ6 3014 aa2.25□□□□□ -2.05
PTPN13-202ENST00000411767 UTP20O75691 2785 aaKnown RBP2.24□□□□□ -2.05
PTPN13-202ENST00000411767 CENPEQ02224 2701 aa2.24□□□□□ -2.05
PTPN13-202ENST00000411767 ZANQ9Y493 2812 aa2.24□□□□□ -2.05
PTPN13-202ENST00000411767 MXRA5Q9NR99 2828 aa2.24□□□□□ -2.05
PTPN13-202ENST00000411767 MT3P25713 68 aa2.24□□□□□ -2.05
PTPN13-202ENST00000411767 CSMD1Q96PZ7 3565 aa2.24□□□□□ -2.05
PTPN13-202ENST00000411767 KRTAP13-1Q8IUC0 172 aa2.23□□□□□ -2.05
PTPN13-202ENST00000411767 ANK3Q12955 4377 aaKnown RBP2.23□□□□□ -2.05
PTPN13-202ENST00000411767 TEX15Q9BXT5 2789 aa2.22□□□□□ -2.05
PTPN13-202ENST00000411767 VPS13CQ709C8 3753 aa2.22□□□□□ -2.05
PTPN13-202ENST00000411767 SVEP1Q4LDE5 3571 aa2.22□□□□□ -2.05
PTPN13-202ENST00000411767 APCP25054 2843 aa2.22□□□□□ -2.05
PTPN13-202ENST00000411767 STAB2Q8WWQ8 2551 aa2.21□□□□□ -2.06
PTPN13-202ENST00000411767 FBN2P35556 2912 aa2.21□□□□□ -2.06
PTPN13-202ENST00000411767 FASNP49327 2511 aaKnown RBP2.2□□□□□ -2.06
PTPN13-202ENST00000411767 RYR3Q15413 4870 aa2.2□□□□□ -2.06
PTPN13-202ENST00000411767 ITPR3Q14573 2671 aa2.2□□□□□ -2.06
PTPN13-202ENST00000411767 CRCT1Q9UGL9 99 aa2.2□□□□□ -2.06
PTPN13-202ENST00000411767 NOTCH1P46531 2555 aa2.19□□□□□ -2.06
PTPN13-202ENST00000411767 CHD6Q8TD26 2715 aa2.19□□□□□ -2.06
PTPN13-202ENST00000411767 FLNAP21333 2647 aaKnown RBP2.19□□□□□ -2.06
PTPN13-202ENST00000411767 NF1P21359 2839 aa2.18□□□□□ -2.06
PTPN13-202ENST00000411767 HELZ2Q9BYK8 2649 aaKnown RBP2.18□□□□□ -2.06
PTPN13-202ENST00000411767 KMT2BQ9UMN6 2715 aaPredicted RBP2.18□□□□□ -2.06
PTPN13-202ENST00000411767 KRTAP1-1Q07627 177 aa2.18□□□□□ -2.06
PTPN13-202ENST00000411767 ITPR2Q14571 2701 aa2.18□□□□□ -2.06
PTPN13-202ENST00000411767 CSMD2Q7Z408 3487 aa2.17□□□□□ -2.06
PTPN13-202ENST00000411767 RYR2Q92736 4967 aa2.17□□□□□ -2.06
PTPN13-202ENST00000411767 KRTAP1-3Q8IUG1 177 aa2.17□□□□□ -2.06
PTPN13-202ENST00000411767 ZNF469Q96JG9 3925 aaPredicted RBP2.17□□□□□ -2.06
PTPN13-202ENST00000411767 KRTAP12-1P59990 96 aa2.16□□□□□ -2.06
PTPN13-202ENST00000411767 PDZD2O15018 2839 aa2.16□□□□□ -2.06
PTPN13-202ENST00000411767 UNC79Q9P2D8 2635 aa2.16□□□□□ -2.06
PTPN13-202ENST00000411767 TENM4Q6N022 2769 aa2.16□□□□□ -2.06
PTPN13-202ENST00000411767 STAB1Q9NY15 2570 aa2.16□□□□□ -2.06
PTPN13-202ENST00000411767 AKAP9Q99996 3911 aa2.15□□□□□ -2.06
PTPN13-202ENST00000411767 KRTAP10-12P60413 245 aa2.15□□□□□ -2.07
PTPN13-202ENST00000411767 KRTAP10-5P60370 271 aa2.15□□□□□ -2.07
PTPN13-202ENST00000411767 MGAM2Q2M2H8 2515 aa2.14□□□□□ -2.07
PTPN13-202ENST00000411767 KRTAP13-3Q3SY46 172 aa2.14□□□□□ -2.07
PTPN13-202ENST00000411767 SETXQ7Z333 2677 aaKnown RBP2.13□□□□□ -2.07
PTPN13-202ENST00000411767 FAT3Q8TDW7 4589 aa2.13□□□□□ -2.07
PTPN13-202ENST00000411767 DNAH17Q9UFH2 4485 aa2.13□□□□□ -2.07
PTPN13-202ENST00000411767 HYDINQ4G0P3 5121 aa2.13□□□□□ -2.07
PTPN13-202ENST00000411767 NSD1Q96L73 2696 aaPredicted RBP2.13□□□□□ -2.07
PTPN13-202ENST00000411767 NIPBLQ6KC79 2804 aaeCLIP2.11□□□□□ -2.07
PTPN13-202ENST00000411767 GCN1Q92616 2671 aaKnown RBP2.11□□□□□ -2.07
PTPN13-202ENST00000411767 FAT2Q9NYQ8 4349 aa2.11□□□□□ -2.07
PTPN13-202ENST00000411767 OTOGQ6ZRI0 2925 aa2.1□□□□□ -2.07
PTPN13-202ENST00000411767 NBEAL1Q6ZS30 2694 aa2.09□□□□□ -2.07
PTPN13-202ENST00000411767 BAHCC1Q9P281 2608 aa2.08□□□□□ -2.08
PTPN13-202ENST00000411767 VWFP04275 2813 aa2.08□□□□□ -2.08
PTPN13-202ENST00000411767 TEP1Q99973 2627 aaKnown RBP2.08□□□□□ -2.08
PTPN13-202ENST00000411767 HECTD1Q9ULT8 2610 aa2.08□□□□□ -2.08
PTPN13-202ENST00000411767 CUBNO60494 3623 aa2.08□□□□□ -2.08
PTPN13-202ENST00000411767 HIVEP1P15822 2718 aa2.08□□□□□ -2.08
PTPN13-202ENST00000411767 DNAH3Q8TD57 4116 aa2.07□□□□□ -2.08
PTPN13-202ENST00000411767 KRTAP12-3P60328 96 aa2.07□□□□□ -2.08
PTPN13-202ENST00000411767 ATRQ13535 2644 aa2.07□□□□□ -2.08
PTPN13-202ENST00000411767 DYNC2H1Q8NCM8 4307 aaKnown RBP2.07□□□□□ -2.08
PTPN13-202ENST00000411767 TENM1Q9UKZ4 2725 aa2.07□□□□□ -2.08
PTPN13-202ENST00000411767 KRTAP21-3Q3LHN1 58 aa2.07□□□□□ -2.08
PTPN13-202ENST00000411767 KRTAP1-4P0C5Y4 121 aa2.06□□□□□ -2.08
PTPN13-202ENST00000411767 DNAH11Q96DT5 4516 aa2.05□□□□□ -2.08
PTPN13-202ENST00000411767 KRTAP7-1Q8IUC3 87 aa2.05□□□□□ -2.08
PTPN13-202ENST00000411767 EPPK1P58107 5090 aaKnown RBP2.05□□□□□ -2.08
PTPN13-202ENST00000411767 DNAH2Q9P225 4427 aa2.05□□□□□ -2.08
PTPN13-202ENST00000411767 NBEAL2Q6ZNJ1 2754 aa2.04□□□□□ -2.08
PTPN13-202ENST00000411767 RYR1P21817 5038 aa2.04□□□□□ -2.08
PTPN13-202ENST00000411767 ANK2Q01484 3957 aa2.03□□□□□ -2.09
PTPN13-202ENST00000411767 TRRAPQ9Y4A5 3859 aa2.02□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms