RNA–Protein interactions for RNA: ENST00000411767.6

PTPN13-202, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 8,119 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-202ENST00000411767 PELP1Q8IZL8 1130 aaKnown RBP7.94□□□□□ -1.14
PTPN13-202ENST00000411767 MYT1Q01538 1121 aa7.55□□□□□ -1.2
PTPN13-202ENST00000411767 CCER1Q8TC90 406 aaPredicted RBP7.51□□□□□ -1.21
PTPN13-202ENST00000411767 YTHDC1Q96MU7 727 aaKnown RBP7.49□□□□□ -1.21
PTPN13-202ENST00000411767 ERICH6Q7L0X2 663 aa7.47□□□□□ -1.21
PTPN13-202ENST00000411767 TTBK1Q5TCY1 1321 aaPredicted RBP7.3□□□□□ -1.24
PTPN13-202ENST00000411767 DAXXQ9UER7 740 aaPredicted RBP7.04□□□□□ -1.28
PTPN13-202ENST00000411767 FAM9AQ8IZU1 332 aaPredicted RBP6.95□□□□□ -1.3
PTPN13-202ENST00000411767 CLSPNQ9HAW4 1339 aa6.93□□□□□ -1.3
PTPN13-202ENST00000411767 NEFLP07196 543 aa6.93□□□□□ -1.3
PTPN13-202ENST00000411767 CENPBP07199 599 aaPredicted RBP6.93□□□□□ -1.3
PTPN13-202ENST00000411767 RANGAP1P46060 587 aaPredicted RBP6.88□□□□□ -1.31
PTPN13-202ENST00000411767 GLIPR1L2Q4G1C9 344 aa6.84□□□□□ -1.31
PTPN13-202ENST00000411767 RTL5Q5HYW3 569 aaPredicted RBP6.8□□□□□ -1.32
PTPN13-202ENST00000411767 ZNF316A6NFI3 1004 aaPredicted RBP6.77□□□□□ -1.33
PTPN13-202ENST00000411767 APLP2Q06481 763 aa6.77□□□□□ -1.33
PTPN13-202ENST00000411767 MYT1LQ9UL68 1186 aa6.74□□□□□ -1.33
PTPN13-202ENST00000411767 POLR3GLQ9BT43 218 aa6.69□□□□□ -1.34
PTPN13-202ENST00000411767 CDK11BP21127 795 aaKnown RBP6.61□□□□□ -1.35
PTPN13-202ENST00000411767 CDK11AQ9UQ88 783 aaPredicted RBP6.61□□□□□ -1.35
PTPN13-202ENST00000411767 ANP32BQ92688 251 aaKnown RBP6.59□□□□□ -1.35
PTPN13-202ENST00000411767 ZEB1P37275 1124 aaPredicted RBP6.57□□□□□ -1.36
PTPN13-202ENST00000411767 TNNT2P45379 298 aaPredicted RBP6.55□□□□□ -1.36
PTPN13-202ENST00000411767 TRIM26Q12899 539 aaPredicted RBP6.55□□□□□ -1.36
PTPN13-202ENST00000411767 NEFMP07197 916 aa6.54□□□□□ -1.36
PTPN13-202ENST00000411767 DCAF8L2P0C7V8 631 aa6.54□□□□□ -1.36
PTPN13-202ENST00000411767 ZBTB47Q9UFB7 747 aaPredicted RBP6.53□□□□□ -1.36
PTPN13-202ENST00000411767 CALRP27797 417 aaKnown RBP6.49□□□□□ -1.37
PTPN13-202ENST00000411767 TRIM44Q96DX7 344 aaPredicted RBP6.46□□□□□ -1.38
PTPN13-202ENST00000411767 EIF5BO60841 1220 aaKnown RBP6.45□□□□□ -1.38
PTPN13-202ENST00000411767 NCLP19338 710 aaKnown RBP6.4□□□□□ -1.39
PTPN13-202ENST00000411767 ZNF326Q5BKZ1 582 aaKnown RBP6.4□□□□□ -1.39
PTPN13-202ENST00000411767 ATP1B4Q9UN42 357 aaPredicted RBP6.39□□□□□ -1.39
PTPN13-202ENST00000411767 NISCHQ9Y2I1 1504 aa6.34□□□□□ -1.39
PTPN13-202ENST00000411767 EHMT2Q96KQ7 1210 aa6.32□□□□□ -1.4
PTPN13-202ENST00000411767 L1TD1Q5T7N2 865 aaKnown RBP6.28□□□□□ -1.4
PTPN13-202ENST00000411767 NEUROD1Q13562 356 aa6.27□□□□□ -1.41
PTPN13-202ENST00000411767 GOLGA6L22H0YM25 854 aa6.27□□□□□ -1.41
PTPN13-202ENST00000411767 ANP32AP39687 249 aaKnown RBP6.27□□□□□ -1.41
PTPN13-202ENST00000411767 HSP90AA1P07900 732 aaKnown RBP6.26□□□□□ -1.41
PTPN13-202ENST00000411767 PTMSP20962 102 aa6.26□□□□□ -1.41
PTPN13-202ENST00000411767 PCGF6Q9BYE7 350 aa6.25□□□□□ -1.41
PTPN13-202ENST00000411767 SLC4A1APQ9BWU0 796 aaKnown RBP6.24□□□□□ -1.41
PTPN13-202ENST00000411767 UPF2Q9HAU5 1272 aaKnown RBP6.23□□□□□ -1.41
PTPN13-202ENST00000411767 ANP32EQ9BTT0 268 aa6.22□□□□□ -1.41
PTPN13-202ENST00000411767 CANXP27824 592 aaKnown RBP6.21□□□□□ -1.42
PTPN13-202ENST00000411767 STK11IPQ8N1F8 1099 aa6.21□□□□□ -1.42
PTPN13-202ENST00000411767 USP35Q9P2H5 1018 aa6.2□□□□□ -1.42
PTPN13-202ENST00000411767 GOLGA6L6A8MZA4 724 aa6.2□□□□□ -1.42
PTPN13-202ENST00000411767 PNNQ9H307 717 aaKnown RBP6.18□□□□□ -1.42
PTPN13-202ENST00000411767 ZRSR1Q15695 479 aaKnown RBP6.18□□□□□ -1.42
PTPN13-202ENST00000411767 GOLGA6L1Q8N7Z2 621 aa6.18□□□□□ -1.42
PTPN13-202ENST00000411767 NRDCO43847 1150 aa6.17□□□□□ -1.42
PTPN13-202ENST00000411767 SETQ01105 290 aaPredicted RBP6.17□□□□□ -1.42
PTPN13-202ENST00000411767 TNNT3P45378 269 aaPredicted RBP6.16□□□□□ -1.42
PTPN13-202ENST00000411767 ERICH6BQ5W0A0 696 aa6.16□□□□□ -1.42
PTPN13-202ENST00000411767 CNGB1Q14028 1251 aaPredicted RBP6.15□□□□□ -1.42
PTPN13-202ENST00000411767 PRM3Q9NNZ6 103 aa6.15□□□□□ -1.43
PTPN13-202ENST00000411767 GOLGA6L4A6NEF3 574 aa6.14□□□□□ -1.43
PTPN13-202ENST00000411767 SLC24A1O60721 1099 aa6.14□□□□□ -1.43
PTPN13-202ENST00000411767 KRI1Q8N9T8 703 aaKnown RBP6.14□□□□□ -1.43
PTPN13-202ENST00000411767 SUPT5HO00267 1087 aaKnown RBP6.13□□□□□ -1.43
PTPN13-202ENST00000411767 APPP05067 770 aa6.12□□□□□ -1.43
PTPN13-202ENST00000411767 NEFHP12036 1026 aa6.11□□□□□ -1.43
PTPN13-202ENST00000411767 CHAF1AQ13111 956 aaPredicted RBP6.11□□□□□ -1.43
PTPN13-202ENST00000411767 DNTTIP2Q5QJE6 756 aaKnown RBP6.1□□□□□ -1.43
PTPN13-202ENST00000411767 KIAA2012Q0VF49 1180 aa6.09□□□□□ -1.43
PTPN13-202ENST00000411767 PTMAP06454 111 aaKnown RBP6.09□□□□□ -1.43
PTPN13-202ENST00000411767 NOC3LQ8WTT2 800 aaKnown RBP6.08□□□□□ -1.44
PTPN13-202ENST00000411767 RRP12Q5JTH9 1297 aaKnown RBP6.08□□□□□ -1.44
PTPN13-202ENST00000411767 SEPT11Q9NVA2 429 aaKnown RBP6.07□□□□□ -1.44
PTPN13-202ENST00000411767 A0A0U1RQG5 324 aaPredicted RBP6.07□□□□□ -1.44
PTPN13-202ENST00000411767 LMOD2Q6P5Q4 547 aa6.07□□□□□ -1.44
PTPN13-202ENST00000411767 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.07□□□□□ -1.44
PTPN13-202ENST00000411767 MEX3CQ5U5Q3 659 aaKnown RBP6.06□□□□□ -1.44
PTPN13-202ENST00000411767 LAS1LQ9Y4W2 734 aaKnown RBP6.06□□□□□ -1.44
PTPN13-202ENST00000411767 NCBP3Q53F19 620 aaKnown RBP6.04□□□□□ -1.44
PTPN13-202ENST00000411767 AMER1Q5JTC6 1135 aaPredicted RBP6.03□□□□□ -1.44
PTPN13-202ENST00000411767 ANP32CO43423 234 aa6.01□□□□□ -1.45
PTPN13-202ENST00000411767 BCL11AQ9H165 835 aa6.01□□□□□ -1.45
PTPN13-202ENST00000411767 NAP1L5Q96NT1 182 aaPredicted RBP6□□□□□ -1.45
PTPN13-202ENST00000411767 HMMRO75330 724 aa6□□□□□ -1.45
PTPN13-202ENST00000411767 BECN1Q14457 450 aa6□□□□□ -1.45
PTPN13-202ENST00000411767 HSP90B1P14625 803 aaKnown RBP6□□□□□ -1.45
PTPN13-202ENST00000411767 WDR43Q15061 677 aaKnown RBP eCLIP6□□□□□ -1.45
PTPN13-202ENST00000411767 CLSTN1O94985 981 aa5.99□□□□□ -1.45
PTPN13-202ENST00000411767 DIEXFQ68CQ4 756 aaKnown RBP5.99□□□□□ -1.45
PTPN13-202ENST00000411767 NPM2Q86SE8 214 aaKnown RBP5.99□□□□□ -1.45
PTPN13-202ENST00000411767 HTATSF1O43719 755 aaKnown RBP5.99□□□□□ -1.45
PTPN13-202ENST00000411767 TULP1O00294 542 aaPredicted RBP5.98□□□□□ -1.45
PTPN13-202ENST00000411767 DDRGK1Q96HY6 314 aa5.98□□□□□ -1.45
PTPN13-202ENST00000411767 MYH16Q9H6N6 1097 aa5.98□□□□□ -1.45
PTPN13-202ENST00000411767 PDCL3Q9H2J4 239 aa5.96□□□□□ -1.46
PTPN13-202ENST00000411767 NEXNQ0ZGT2 675 aa5.96□□□□□ -1.46
PTPN13-202ENST00000411767 CHIC1Q5VXU3 224 aa5.95□□□□□ -1.46
PTPN13-202ENST00000411767 ABCF1Q8NE71 845 aaKnown RBP eCLIP5.95□□□□□ -1.46
PTPN13-202ENST00000411767 HMGN5P82970 282 aaKnown RBP5.95□□□□□ -1.46
PTPN13-202ENST00000411767 CASC1Q6TDU7 716 aa5.94□□□□□ -1.46
PTPN13-202ENST00000411767 CEP89Q96ST8 783 aa5.94□□□□□ -1.46
PTPN13-202ENST00000411767 FKBP8Q14318 412 aa5.93□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms