RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 SRRM2Q9UQ35 2752 aaKnown RBP5.3□□□□□ -1.56
LIG4-202ENST00000405925 H7BZZ5 65 aa5.3□□□□□ -1.56
LIG4-202ENST00000405925 A0A0U1RQV1 116 aa5.3□□□□□ -1.56
LIG4-202ENST00000405925 KRTAP13-2Q52LG2 175 aa5.29□□□□□ -1.56
LIG4-202ENST00000405925 Q8N1X5 172 aa5.29□□□□□ -1.56
LIG4-202ENST00000405925 COA5Q86WW8 74 aa5.28□□□□□ -1.56
LIG4-202ENST00000405925 A0A1B0GU69 56 aa5.27□□□□□ -1.57
LIG4-202ENST00000405925 RBM12B-AS1Q9P1G2 102 aa5.26□□□□□ -1.57
LIG4-202ENST00000405925 ZCCHC13Q8WW36 166 aaKnown RBP5.25□□□□□ -1.57
LIG4-202ENST00000405925 C4orf26Q17RF5 130 aa5.25□□□□□ -1.57
LIG4-202ENST00000405925 Q8N9P0 234 aaPredicted RBP5.24□□□□□ -1.57
LIG4-202ENST00000405925 COL7A1Q02388 2944 aa5.24□□□□□ -1.57
LIG4-202ENST00000405925 AKAP9Q99996 3911 aa5.23□□□□□ -1.57
LIG4-202ENST00000405925 RPS28P62857 69 aaKnown RBP5.22□□□□□ -1.57
LIG4-202ENST00000405925 NOTCH2NLQ7Z3S9 236 aa5.22□□□□□ -1.57
LIG4-202ENST00000405925 HRES1P13985 223 aa5.21□□□□□ -1.58
LIG4-202ENST00000405925 Q5W150 140 aa5.21□□□□□ -1.58
LIG4-202ENST00000405925 FP248Q71RG6 208 aaPredicted RBP5.21□□□□□ -1.58
LIG4-202ENST00000405925 SPANXA2-OT1Q8N9U9 137 aa5.2□□□□□ -1.58
LIG4-202ENST00000405925 SPINK7P58062 85 aa5.2□□□□□ -1.58
LIG4-202ENST00000405925 MEGF8Q7Z7M0 2845 aa5.19□□□□□ -1.58
LIG4-202ENST00000405925 CYP4F30PQ9H0H9 118 aa5.19□□□□□ -1.58
LIG4-202ENST00000405925 KRTAP29-1A8MX34 341 aaPredicted RBP5.18□□□□□ -1.58
LIG4-202ENST00000405925 ASB16-AS1Q495Z4 193 aa5.18□□□□□ -1.58
LIG4-202ENST00000405925 KRTAP1-4P0C5Y4 121 aa5.18□□□□□ -1.58
LIG4-202ENST00000405925 OXTP01178 125 aa5.17□□□□□ -1.58
LIG4-202ENST00000405925 SEC61BP60468 96 aaKnown RBP5.17□□□□□ -1.58
LIG4-202ENST00000405925 RPS29P62273 56 aaKnown RBP5.17□□□□□ -1.58
LIG4-202ENST00000405925 CYSTM1Q9H1C7 97 aa5.16□□□□□ -1.58
LIG4-202ENST00000405925 A8MUN3 132 aa5.15□□□□□ -1.58
LIG4-202ENST00000405925 A0A1B0GVY2 172 aa5.14□□□□□ -1.59
LIG4-202ENST00000405925 Q5XG85 94 aa5.14□□□□□ -1.59
LIG4-202ENST00000405925 PMAIP1Q13794 54 aa5.1□□□□□ -1.59
LIG4-202ENST00000405925 M0R2T5 61 aa5.08□□□□□ -1.6
LIG4-202ENST00000405925 UQCR11O14957 56 aa5.07□□□□□ -1.6
LIG4-202ENST00000405925 DNHD1Q96M86 4753 aa5.05□□□□□ -1.6
LIG4-202ENST00000405925 HUWE1Q7Z6Z7 4374 aaKnown RBP5.04□□□□□ -1.6
LIG4-202ENST00000405925 LINC01554Q52M75 96 aa5.04□□□□□ -1.6
LIG4-202ENST00000405925 CSAG1Q6PB30 78 aa5.02□□□□□ -1.61
LIG4-202ENST00000405925 Q75L30 129 aa5.02□□□□□ -1.61
LIG4-202ENST00000405925 S4R3F8 94 aa5.02□□□□□ -1.61
LIG4-202ENST00000405925 RPL37P61927 97 aaKnown RBP5□□□□□ -1.61
LIG4-202ENST00000405925 MIR22HGQ0VDD5 57 aa5□□□□□ -1.61
LIG4-202ENST00000405925 A0A0D9SG42 100 aa4.99□□□□□ -1.61
LIG4-202ENST00000405925 DMAC1Q96GE9 116 aa4.99□□□□□ -1.61
LIG4-202ENST00000405925 PRO0628Q9UI54 55 aa4.97□□□□□ -1.61
LIG4-202ENST00000405925 A8MUU9 505 aa4.96□□□□□ -1.62
LIG4-202ENST00000405925 C20orf166-AS1Q96NR2 134 aa4.95□□□□□ -1.62
LIG4-202ENST00000405925 DNAH9Q9NYC9 4486 aa4.95□□□□□ -1.62
LIG4-202ENST00000405925 KRTAP10-8P60410 259 aa4.94□□□□□ -1.62
LIG4-202ENST00000405925 A0A1B0GU33 70 aa4.94□□□□□ -1.62
LIG4-202ENST00000405925 SPINT4Q6UDR6 99 aa4.94□□□□□ -1.62
LIG4-202ENST00000405925 Q1T7F1 81 aa4.93□□□□□ -1.62
LIG4-202ENST00000405925 XP32Q5T750 250 aa4.93□□□□□ -1.62
LIG4-202ENST00000405925 LINC01558Q9Y6Z2 57 aa4.92□□□□□ -1.62
LIG4-202ENST00000405925 TPRXLQ17RH7 258 aa4.88□□□□□ -1.63
LIG4-202ENST00000405925 H1FX-AS1Q4G0G2 97 aa4.88□□□□□ -1.63
LIG4-202ENST00000405925 CSMD3Q7Z407 3707 aa4.87□□□□□ -1.63
LIG4-202ENST00000405925 R4GN34 69 aa4.87□□□□□ -1.63
LIG4-202ENST00000405925 KRTAP16-1A8MUX0 517 aa4.86□□□□□ -1.63
LIG4-202ENST00000405925 KRTAP13-3Q3SY46 172 aa4.86□□□□□ -1.63
LIG4-202ENST00000405925 CDC42SE1Q9NRR8 79 aa4.85□□□□□ -1.63
LIG4-202ENST00000405925 CAMK2N1Q7Z7J9 78 aa4.83□□□□□ -1.64
LIG4-202ENST00000405925 Q5VV11 94 aa4.82□□□□□ -1.64
LIG4-202ENST00000405925 PLECQ15149 4684 aaKnown RBP4.82□□□□□ -1.64
LIG4-202ENST00000405925 ADM2Q7Z4H4 148 aa4.81□□□□□ -1.64
LIG4-202ENST00000405925 M0QZ58 72 aa4.8□□□□□ -1.64
LIG4-202ENST00000405925 PRKDCP78527 4128 aaKnown RBP4.79□□□□□ -1.64
LIG4-202ENST00000405925 CRIPTQ9P021 101 aa4.76□□□□□ -1.65
LIG4-202ENST00000405925 KRTAP10-4P60372 401 aaPredicted RBP4.75□□□□□ -1.65
LIG4-202ENST00000405925 SPATA8Q6RVD6 105 aa4.75□□□□□ -1.65
LIG4-202ENST00000405925 ANK2Q01484 3957 aa4.74□□□□□ -1.65
LIG4-202ENST00000405925 LCA10Q71F78 164 aa4.74□□□□□ -1.65
LIG4-202ENST00000405925 KRTAP4-5Q9BYR2 181 aa4.74□□□□□ -1.65
LIG4-202ENST00000405925 STARD9Q9P2P6 4700 aa4.73□□□□□ -1.65
LIG4-202ENST00000405925 MT1HL1P0DM35 61 aa4.73□□□□□ -1.65
LIG4-202ENST00000405925 DNAH5Q8TE73 4624 aa4.72□□□□□ -1.65
LIG4-202ENST00000405925 DNAH11Q96DT5 4516 aa4.69□□□□□ -1.66
LIG4-202ENST00000405925 DNAH1Q9P2D7 4330 aa4.69□□□□□ -1.66
LIG4-202ENST00000405925 ALMS1Q8TCU4 4167 aa4.68□□□□□ -1.66
LIG4-202ENST00000405925 VPS13DQ5THJ4 4388 aa4.67□□□□□ -1.66
LIG4-202ENST00000405925 DNAH10Q8IVF4 4471 aa4.64□□□□□ -1.67
LIG4-202ENST00000405925 A8MU10 97 aa4.64□□□□□ -1.67
LIG4-202ENST00000405925 KTN1-AS1Q86SY8 53 aa4.64□□□□□ -1.67
LIG4-202ENST00000405925 PLAC4Q8WY50 150 aa4.61□□□□□ -1.67
LIG4-202ENST00000405925 DYNC1H1Q14204 4646 aaKnown RBP4.6□□□□□ -1.67
LIG4-202ENST00000405925 FAT1Q14517 4588 aa4.6□□□□□ -1.67
LIG4-202ENST00000405925 LRP1BQ9NZR2 4599 aa4.57□□□□□ -1.68
LIG4-202ENST00000405925 PRAC1Q96KF2 57 aa4.56□□□□□ -1.68
LIG4-202ENST00000405925 DNAH17Q9UFH2 4485 aa4.56□□□□□ -1.68
LIG4-202ENST00000405925 DNAH3Q8TD57 4116 aa4.56□□□□□ -1.68
LIG4-202ENST00000405925 KIAA1109Q2LD37 5005 aa4.55□□□□□ -1.68
LIG4-202ENST00000405925 KMT2AQ03164 3969 aa4.54□□□□□ -1.68
LIG4-202ENST00000405925 ROMO1P60602 79 aa4.53□□□□□ -1.68
LIG4-202ENST00000405925 KRTAP10-10P60014 251 aa4.52□□□□□ -1.69
LIG4-202ENST00000405925 P0C880 135 aa4.51□□□□□ -1.69
LIG4-202ENST00000405925 CMYA5Q8N3K9 4069 aa4.51□□□□□ -1.69
LIG4-202ENST00000405925 RYR1P21817 5038 aa4.51□□□□□ -1.69
LIG4-202ENST00000405925 KRTAP3-1Q9BYR8 98 aa4.5□□□□□ -1.69
LIG4-202ENST00000405925 DNAH2Q9P225 4427 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms