RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 IGLV5-52A0A0A0MRZ9 124 aa7.37□□□□□ -1.23
HMGB1-206ENST00000405805 CNBPP62633 177 aaKnown RBP7.37□□□□□ -1.23
HMGB1-206ENST00000405805 KRTAP11-1Q8IUC1 163 aa7.37□□□□□ -1.23
HMGB1-206ENST00000405805 CSMD3Q7Z407 3707 aa7.35□□□□□ -1.23
HMGB1-206ENST00000405805 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.34□□□□□ -1.23
HMGB1-206ENST00000405805 PANO1I0J062 215 aa7.34□□□□□ -1.23
HMGB1-206ENST00000405805 ZCCHC13Q8WW36 166 aaKnown RBP7.34□□□□□ -1.24
HMGB1-206ENST00000405805 APLNQ9ULZ1 77 aa7.33□□□□□ -1.24
HMGB1-206ENST00000405805 TGP01266 2768 aa7.31□□□□□ -1.24
HMGB1-206ENST00000405805 COL7A1Q02388 2944 aa7.31□□□□□ -1.24
HMGB1-206ENST00000405805 PSORS1C2Q9UIG4 136 aa7.3□□□□□ -1.24
HMGB1-206ENST00000405805 SPACA4Q8TDM5 124 aa7.29□□□□□ -1.24
HMGB1-206ENST00000405805 LINC00472Q9H8W2 130 aa7.27□□□□□ -1.25
HMGB1-206ENST00000405805 A0A1B0GVX0 72 aa7.27□□□□□ -1.25
HMGB1-206ENST00000405805 MMP24-AS1A0A0U1RRL7 71 aa7.27□□□□□ -1.25
HMGB1-206ENST00000405805 A0A0A0MQY5 61 aa7.25□□□□□ -1.25
HMGB1-206ENST00000405805 PLA2G1BP04054 148 aaKnown RBP7.24□□□□□ -1.25
HMGB1-206ENST00000405805 A0A087WTM6 91 aa7.24□□□□□ -1.25
HMGB1-206ENST00000405805 Q8N1X5 172 aa7.23□□□□□ -1.25
HMGB1-206ENST00000405805 A0A0D9SG42 100 aa7.23□□□□□ -1.25
HMGB1-206ENST00000405805 ZNF861PO60384 105 aa7.21□□□□□ -1.25
HMGB1-206ENST00000405805 A0A087X002 238 aa7.21□□□□□ -1.26
HMGB1-206ENST00000405805 KRTAP29-1A8MX34 341 aaPredicted RBP7.21□□□□□ -1.26
HMGB1-206ENST00000405805 NOTCH2NLQ7Z3S9 236 aa7.21□□□□□ -1.26
HMGB1-206ENST00000405805 FAM229AH3BQW9 127 aa7.2□□□□□ -1.26
HMGB1-206ENST00000405805 Q6ZR54 194 aa7.2□□□□□ -1.26
HMGB1-206ENST00000405805 KRTAP16-1A8MUX0 517 aa7.18□□□□□ -1.26
HMGB1-206ENST00000405805 NDUFAF8A1L188 74 aa7.16□□□□□ -1.26
HMGB1-206ENST00000405805 LCE6AA0A183 80 aa7.13□□□□□ -1.27
HMGB1-206ENST00000405805 SPRR1BP22528 89 aa7.13□□□□□ -1.27
HMGB1-206ENST00000405805 ROMO1P60602 79 aa7.13□□□□□ -1.27
HMGB1-206ENST00000405805 IGLV7-43P04211 117 aa7.11□□□□□ -1.27
HMGB1-206ENST00000405805 WWC2-AS2Q96NR7 200 aa7.1□□□□□ -1.27
HMGB1-206ENST00000405805 FBN3Q75N90 2809 aa7.1□□□□□ -1.27
HMGB1-206ENST00000405805 Q96NJ1 140 aa7.1□□□□□ -1.27
HMGB1-206ENST00000405805 A0A1B0GU33 70 aa7.09□□□□□ -1.27
HMGB1-206ENST00000405805 Q5W150 140 aa7.08□□□□□ -1.28
HMGB1-206ENST00000405805 SPATA8Q6RVD6 105 aa7.07□□□□□ -1.28
HMGB1-206ENST00000405805 LUZP6Q538Z0 58 aa7.05□□□□□ -1.28
HMGB1-206ENST00000405805 KRTAP25-1Q3LHN0 102 aa7.05□□□□□ -1.28
HMGB1-206ENST00000405805 TYMSOSQ8TAI1 123 aa7.04□□□□□ -1.28
HMGB1-206ENST00000405805 SMR3BP02814 79 aaPredicted RBP7.04□□□□□ -1.28
HMGB1-206ENST00000405805 DMAC1Q96GE9 116 aa7.03□□□□□ -1.28
HMGB1-206ENST00000405805 ASB16-AS1Q495Z4 193 aa7.02□□□□□ -1.29
HMGB1-206ENST00000405805 C9orf92A6NGG3 77 aa7.01□□□□□ -1.29
HMGB1-206ENST00000405805 Q6ZRN7 208 aaPredicted RBP7.01□□□□□ -1.29
HMGB1-206ENST00000405805 ANK2Q01484 3957 aa6.99□□□□□ -1.29
HMGB1-206ENST00000405805 KRTAP10-2P60368 255 aa6.97□□□□□ -1.29
HMGB1-206ENST00000405805 PLAC8Q9NZF1 115 aa6.97□□□□□ -1.29
HMGB1-206ENST00000405805 KRTAP13-1Q8IUC0 172 aa6.95□□□□□ -1.3
HMGB1-206ENST00000405805 HUWE1Q7Z6Z7 4374 aaKnown RBP6.95□□□□□ -1.3
HMGB1-206ENST00000405805 A8MUU9 505 aa6.94□□□□□ -1.3
HMGB1-206ENST00000405805 LINC00483Q53H64 154 aa6.92□□□□□ -1.3
HMGB1-206ENST00000405805 MEGF8Q7Z7M0 2845 aa6.91□□□□□ -1.3
HMGB1-206ENST00000405805 KRTAP10-1P60331 282 aa6.86□□□□□ -1.31
HMGB1-206ENST00000405805 DNAH10Q8IVF4 4471 aa6.86□□□□□ -1.31
HMGB1-206ENST00000405805 LINC00304Q8N9R0 145 aa6.85□□□□□ -1.31
HMGB1-206ENST00000405805 C20orf166-AS1Q96NR2 134 aa6.83□□□□□ -1.32
HMGB1-206ENST00000405805 KRTAP13-2Q52LG2 175 aa6.79□□□□□ -1.32
HMGB1-206ENST00000405805 RPL37P61927 97 aaKnown RBP6.77□□□□□ -1.33
HMGB1-206ENST00000405805 DNAH9Q9NYC9 4486 aa6.77□□□□□ -1.33
HMGB1-206ENST00000405805 H1FX-AS1Q4G0G2 97 aa6.77□□□□□ -1.33
HMGB1-206ENST00000405805 LYSTQ99698 3801 aa6.76□□□□□ -1.33
HMGB1-206ENST00000405805 PLECQ15149 4684 aaKnown RBP6.75□□□□□ -1.33
HMGB1-206ENST00000405805 C10orf95Q9H7T3 257 aa6.73□□□□□ -1.33
HMGB1-206ENST00000405805 CMYA5Q8N3K9 4069 aa6.7□□□□□ -1.34
HMGB1-206ENST00000405805 PRKDCP78527 4128 aaKnown RBP6.63□□□□□ -1.35
HMGB1-206ENST00000405805 Q6ZSA8 131 aa6.62□□□□□ -1.35
HMGB1-206ENST00000405805 DNHD1Q96M86 4753 aa6.62□□□□□ -1.35
HMGB1-206ENST00000405805 STARD9Q9P2P6 4700 aa6.6□□□□□ -1.35
HMGB1-206ENST00000405805 DNAH1Q9P2D7 4330 aa6.59□□□□□ -1.35
HMGB1-206ENST00000405805 DNAH3Q8TD57 4116 aa6.58□□□□□ -1.36
HMGB1-206ENST00000405805 H0YAA0 97 aa6.58□□□□□ -1.36
HMGB1-206ENST00000405805 KRTAP13-3Q3SY46 172 aa6.57□□□□□ -1.36
HMGB1-206ENST00000405805 P0C880 135 aa6.56□□□□□ -1.36
HMGB1-206ENST00000405805 DNAH7Q8WXX0 4024 aa6.56□□□□□ -1.36
HMGB1-206ENST00000405805 KRTAP1-4P0C5Y4 121 aa6.56□□□□□ -1.36
HMGB1-206ENST00000405805 KMT2AQ03164 3969 aa6.54□□□□□ -1.36
HMGB1-206ENST00000405805 COX6B2Q6YFQ2 88 aa6.53□□□□□ -1.36
HMGB1-206ENST00000405805 DNAH11Q96DT5 4516 aa6.52□□□□□ -1.37
HMGB1-206ENST00000405805 VPS13DQ5THJ4 4388 aa6.47□□□□□ -1.37
HMGB1-206ENST00000405805 CAMK2N1Q7Z7J9 78 aa6.45□□□□□ -1.38
HMGB1-206ENST00000405805 SEC61BP60468 96 aaKnown RBP6.43□□□□□ -1.38
HMGB1-206ENST00000405805 FRAS1Q86XX4 4008 aa6.38□□□□□ -1.39
HMGB1-206ENST00000405805 Q5VSD8 79 aa6.38□□□□□ -1.39
HMGB1-206ENST00000405805 S4R3F8 94 aa6.37□□□□□ -1.39
HMGB1-206ENST00000405805 DNAH8Q96JB1 4490 aa6.37□□□□□ -1.39
HMGB1-206ENST00000405805 DNAH2Q9P225 4427 aa6.36□□□□□ -1.39
HMGB1-206ENST00000405805 LRP1BQ9NZR2 4599 aa6.35□□□□□ -1.39
HMGB1-206ENST00000405805 DNAH17Q9UFH2 4485 aa6.35□□□□□ -1.39
HMGB1-206ENST00000405805 R4GN34 69 aa6.33□□□□□ -1.4
HMGB1-206ENST00000405805 KRTAP21-3Q3LHN1 58 aa6.32□□□□□ -1.4
HMGB1-206ENST00000405805 DNAH6Q9C0G6 4158 aa6.32□□□□□ -1.4
HMGB1-206ENST00000405805 PLAC4Q8WY50 150 aa6.32□□□□□ -1.4
HMGB1-206ENST00000405805 TPRXLQ17RH7 258 aa6.31□□□□□ -1.4
HMGB1-206ENST00000405805 M0QZ58 72 aa6.3□□□□□ -1.4
HMGB1-206ENST00000405805 DNAH5Q8TE73 4624 aa6.29□□□□□ -1.4
HMGB1-206ENST00000405805 HECTD4Q9Y4D8 3996 aa6.29□□□□□ -1.4
HMGB1-206ENST00000405805 FAT1Q14517 4588 aa6.28□□□□□ -1.4
HMGB1-206ENST00000405805 KRTAP3-1Q9BYR8 98 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 85.9 ms